Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05755 and MPMX19_05756 are separated by 101 nucleotides MPMX19_05756 and MPMX19_05757 are separated by 136 nucleotides MPMX19_05757 and MPMX19_05758 are separated by 125 nucleotides MPMX19_05758 and MPMX19_05759 are separated by 699 nucleotides
MPMX19_05755: MPMX19_05755 - putative amino-acid metabolite efflux pump, at 476,776 to 477,657
_05755
MPMX19_05756: MPMX19_05756 - hypothetical protein, at 477,759 to 478,415
_05756
MPMX19_05757: MPMX19_05757 - DNA polymerase III subunit alpha, at 478,552 to 482,043
_05757
MPMX19_05758: MPMX19_05758 - tRNA-Thr, at 482,169 to 482,241
_05758
MPMX19_05759: MPMX19_05759 - hypothetical protein, at 482,941 to 483,900
_05759
Position (kb) 478
479
480
481
482
483 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 477.669 kb on + strand at 477.670 kb on - strand at 477.839 kb on + strand, within MPMX19_05756 at 477.839 kb on + strand, within MPMX19_05756 at 477.840 kb on - strand, within MPMX19_05756 at 477.840 kb on - strand, within MPMX19_05756 at 477.840 kb on - strand, within MPMX19_05756 at 477.931 kb on + strand, within MPMX19_05756 at 477.931 kb on + strand, within MPMX19_05756 at 477.931 kb on + strand, within MPMX19_05756 at 477.931 kb on + strand, within MPMX19_05756 at 477.931 kb on + strand, within MPMX19_05756 at 477.931 kb on + strand, within MPMX19_05756 at 477.931 kb on + strand, within MPMX19_05756 at 477.931 kb on + strand, within MPMX19_05756 at 477.931 kb on + strand, within MPMX19_05756 at 477.932 kb on - strand, within MPMX19_05756 at 477.932 kb on - strand, within MPMX19_05756 at 477.932 kb on - strand, within MPMX19_05756 at 477.932 kb on - strand, within MPMX19_05756 at 477.932 kb on - strand, within MPMX19_05756 at 477.932 kb on - strand, within MPMX19_05756 at 477.932 kb on - strand, within MPMX19_05756 at 477.932 kb on - strand, within MPMX19_05756 at 477.932 kb on - strand, within MPMX19_05756 at 478.006 kb on + strand, within MPMX19_05756 at 478.006 kb on + strand, within MPMX19_05756 at 478.007 kb on - strand, within MPMX19_05756 at 478.007 kb on - strand, within MPMX19_05756 at 478.460 kb on + strand at 478.460 kb on + strand at 478.460 kb on + strand at 478.461 kb on - strand at 478.461 kb on - strand at 482.129 kb on + strand at 482.129 kb on + strand at 482.462 kb on + strand at 482.462 kb on + strand at 482.462 kb on + strand at 482.462 kb on + strand at 482.463 kb on - strand at 482.463 kb on - strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.532 kb on - strand at 482.532 kb on - strand at 482.532 kb on - strand at 482.532 kb on - strand at 482.532 kb on - strand at 482.532 kb on - strand at 482.678 kb on + strand at 482.679 kb on - strand at 482.679 kb on - strand at 482.701 kb on + strand at 482.701 kb on + strand at 482.701 kb on + strand at 482.701 kb on + strand at 482.701 kb on + strand at 482.702 kb on - strand at 482.702 kb on - strand at 482.975 kb on + strand at 482.976 kb on - strand at 482.976 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 477,669 + -0.6 477,670 - -1.4 477,839 + MPMX19_05756 0.12 -1.7 477,839 + MPMX19_05756 0.12 +0.0 477,840 - MPMX19_05756 0.12 -0.3 477,840 - MPMX19_05756 0.12 -0.4 477,840 - MPMX19_05756 0.12 -1.9 477,931 + MPMX19_05756 0.26 -0.8 477,931 + MPMX19_05756 0.26 -0.3 477,931 + MPMX19_05756 0.26 -0.3 477,931 + MPMX19_05756 0.26 -1.4 477,931 + MPMX19_05756 0.26 -2.0 477,931 + MPMX19_05756 0.26 -1.8 477,931 + MPMX19_05756 0.26 -1.1 477,931 + MPMX19_05756 0.26 -2.7 477,931 + MPMX19_05756 0.26 +0.8 477,932 - MPMX19_05756 0.26 -0.6 477,932 - MPMX19_05756 0.26 -1.8 477,932 - MPMX19_05756 0.26 +0.0 477,932 - MPMX19_05756 0.26 -0.2 477,932 - MPMX19_05756 0.26 -0.8 477,932 - MPMX19_05756 0.26 -0.8 477,932 - MPMX19_05756 0.26 -0.7 477,932 - MPMX19_05756 0.26 -0.5 477,932 - MPMX19_05756 0.26 -0.1 478,006 + MPMX19_05756 0.38 +0.3 478,006 + MPMX19_05756 0.38 -1.7 478,007 - MPMX19_05756 0.38 -0.6 478,007 - MPMX19_05756 0.38 +0.2 478,460 + -1.3 478,460 + -1.3 478,460 + -0.7 478,461 - -0.8 478,461 - -1.0 482,129 + +0.0 482,129 + -3.0 482,462 + +0.4 482,462 + +0.2 482,462 + -0.7 482,462 + +0.4 482,463 - -0.6 482,463 - +1.8 482,531 + +0.4 482,531 + -1.8 482,531 + +1.0 482,531 + -0.3 482,531 + -0.8 482,531 + -1.1 482,531 + +1.1 482,531 + -0.4 482,531 + -2.4 482,531 + -0.7 482,531 + -1.3 482,531 + -0.4 482,532 - -0.1 482,532 - +0.5 482,532 - -1.3 482,532 - +0.0 482,532 - -2.3 482,532 - +0.2 482,678 + +0.7 482,679 - -1.0 482,679 - -1.1 482,701 + +1.4 482,701 + -1.3 482,701 + -1.7 482,701 + -0.4 482,701 + -0.8 482,702 - -0.5 482,702 - +0.2 482,975 + -0.5 482,976 - -1.6 482,976 - -1.8
Or see this region's nucleotide sequence