Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05756

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05755 and MPMX19_05756 are separated by 101 nucleotidesMPMX19_05756 and MPMX19_05757 are separated by 136 nucleotides MPMX19_05755: MPMX19_05755 - putative amino-acid metabolite efflux pump, at 476,776 to 477,657 _05755 MPMX19_05756: MPMX19_05756 - hypothetical protein, at 477,759 to 478,415 _05756 MPMX19_05757: MPMX19_05757 - DNA polymerase III subunit alpha, at 478,552 to 482,043 _05757 Position (kb) 477 478 479Strain fitness (log2 ratio) -2 -1 0 1 2at 476.766 kb on + strandat 476.766 kb on + strandat 476.766 kb on + strandat 476.766 kb on + strandat 476.766 kb on + strandat 476.766 kb on + strandat 476.766 kb on + strandat 476.766 kb on + strandat 476.766 kb on + strandat 476.767 kb on - strandat 476.767 kb on - strandat 476.767 kb on - strandat 476.767 kb on - strandat 476.767 kb on - strandat 476.767 kb on - strandat 476.767 kb on - strandat 476.767 kb on - strandat 476.767 kb on - strandat 476.767 kb on - strandat 476.767 kb on - strandat 476.771 kb on + strandat 476.771 kb on + strandat 476.771 kb on + strandat 476.772 kb on - strandat 476.772 kb on - strandat 476.772 kb on - strandat 476.772 kb on - strandat 476.772 kb on - strandat 476.772 kb on - strandat 476.772 kb on - strandat 476.772 kb on - strandat 476.772 kb on - strandat 476.772 kb on - strandat 476.772 kb on - strandat 477.014 kb on + strand, within MPMX19_05755at 477.014 kb on + strand, within MPMX19_05755at 477.014 kb on + strand, within MPMX19_05755at 477.014 kb on + strand, within MPMX19_05755at 477.014 kb on + strand, within MPMX19_05755at 477.014 kb on + strand, within MPMX19_05755at 477.014 kb on + strand, within MPMX19_05755at 477.014 kb on + strand, within MPMX19_05755at 477.014 kb on + strand, within MPMX19_05755at 477.015 kb on - strand, within MPMX19_05755at 477.015 kb on - strand, within MPMX19_05755at 477.015 kb on - strand, within MPMX19_05755at 477.015 kb on - strand, within MPMX19_05755at 477.015 kb on - strand, within MPMX19_05755at 477.015 kb on - strand, within MPMX19_05755at 477.015 kb on - strand, within MPMX19_05755at 477.015 kb on - strand, within MPMX19_05755at 477.015 kb on - strand, within MPMX19_05755at 477.015 kb on - strand, within MPMX19_05755at 477.015 kb on - strand, within MPMX19_05755at 477.015 kb on - strand, within MPMX19_05755at 477.015 kb on - strand, within MPMX19_05755at 477.354 kb on + strand, within MPMX19_05755at 477.355 kb on - strand, within MPMX19_05755at 477.473 kb on + strand, within MPMX19_05755at 477.473 kb on + strand, within MPMX19_05755at 477.473 kb on + strand, within MPMX19_05755at 477.473 kb on + strand, within MPMX19_05755at 477.473 kb on + strand, within MPMX19_05755at 477.473 kb on + strand, within MPMX19_05755at 477.473 kb on + strand, within MPMX19_05755at 477.474 kb on - strand, within MPMX19_05755at 477.474 kb on - strand, within MPMX19_05755at 477.474 kb on - strand, within MPMX19_05755at 477.474 kb on - strand, within MPMX19_05755at 477.669 kb on + strandat 477.670 kb on - strandat 477.839 kb on + strand, within MPMX19_05756at 477.839 kb on + strand, within MPMX19_05756at 477.840 kb on - strand, within MPMX19_05756at 477.840 kb on - strand, within MPMX19_05756at 477.840 kb on - strand, within MPMX19_05756at 477.931 kb on + strand, within MPMX19_05756at 477.931 kb on + strand, within MPMX19_05756at 477.931 kb on + strand, within MPMX19_05756at 477.931 kb on + strand, within MPMX19_05756at 477.931 kb on + strand, within MPMX19_05756at 477.931 kb on + strand, within MPMX19_05756at 477.931 kb on + strand, within MPMX19_05756at 477.931 kb on + strand, within MPMX19_05756at 477.931 kb on + strand, within MPMX19_05756at 477.932 kb on - strand, within MPMX19_05756at 477.932 kb on - strand, within MPMX19_05756at 477.932 kb on - strand, within MPMX19_05756at 477.932 kb on - strand, within MPMX19_05756at 477.932 kb on - strand, within MPMX19_05756at 477.932 kb on - strand, within MPMX19_05756at 477.932 kb on - strand, within MPMX19_05756at 477.932 kb on - strand, within MPMX19_05756at 477.932 kb on - strand, within MPMX19_05756at 478.006 kb on + strand, within MPMX19_05756at 478.006 kb on + strand, within MPMX19_05756at 478.007 kb on - strand, within MPMX19_05756at 478.007 kb on - strand, within MPMX19_05756at 478.460 kb on + strandat 478.460 kb on + strandat 478.460 kb on + strandat 478.461 kb on - strandat 478.461 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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476,766 + -1.1
476,766 + -1.7
476,766 + +1.2
476,766 + +0.3
476,766 + +2.4
476,766 + -1.8
476,766 + -0.1
476,766 + -0.7
476,766 + -1.2
476,767 - -0.6
476,767 - +0.0
476,767 - -1.0
476,767 - -1.0
476,767 - -0.2
476,767 - +0.0
476,767 - -0.7
476,767 - -1.6
476,767 - +2.0
476,767 - +0.4
476,767 - +1.2
476,771 + +1.0
476,771 + -0.8
476,771 + -0.5
476,772 - -0.6
476,772 - -1.1
476,772 - -0.6
476,772 - -1.6
476,772 - +0.6
476,772 - +1.0
476,772 - +0.4
476,772 - -1.4
476,772 - -0.8
476,772 - -0.6
476,772 - -2.4
477,014 + MPMX19_05755 0.27 -1.0
477,014 + MPMX19_05755 0.27 -1.1
477,014 + MPMX19_05755 0.27 -2.1
477,014 + MPMX19_05755 0.27 -1.8
477,014 + MPMX19_05755 0.27 -0.2
477,014 + MPMX19_05755 0.27 -1.0
477,014 + MPMX19_05755 0.27 -1.3
477,014 + MPMX19_05755 0.27 -0.9
477,014 + MPMX19_05755 0.27 -2.4
477,015 - MPMX19_05755 0.27 -0.6
477,015 - MPMX19_05755 0.27 -1.1
477,015 - MPMX19_05755 0.27 +0.7
477,015 - MPMX19_05755 0.27 -1.0
477,015 - MPMX19_05755 0.27 -0.8
477,015 - MPMX19_05755 0.27 +0.7
477,015 - MPMX19_05755 0.27 -0.8
477,015 - MPMX19_05755 0.27 -0.9
477,015 - MPMX19_05755 0.27 -0.8
477,015 - MPMX19_05755 0.27 -1.6
477,015 - MPMX19_05755 0.27 -0.3
477,015 - MPMX19_05755 0.27 +0.5
477,015 - MPMX19_05755 0.27 -1.8
477,354 + MPMX19_05755 0.66 +0.0
477,355 - MPMX19_05755 0.66 -1.3
477,473 + MPMX19_05755 0.79 +0.2
477,473 + MPMX19_05755 0.79 +0.2
477,473 + MPMX19_05755 0.79 -1.3
477,473 + MPMX19_05755 0.79 +0.4
477,473 + MPMX19_05755 0.79 +0.2
477,473 + MPMX19_05755 0.79 +0.3
477,473 + MPMX19_05755 0.79 -0.1
477,474 - MPMX19_05755 0.79 -0.9
477,474 - MPMX19_05755 0.79 -0.2
477,474 - MPMX19_05755 0.79 -0.5
477,474 - MPMX19_05755 0.79 +0.2
477,669 + -0.6
477,670 - -1.4
477,839 + MPMX19_05756 0.12 -1.7
477,839 + MPMX19_05756 0.12 +0.0
477,840 - MPMX19_05756 0.12 -0.3
477,840 - MPMX19_05756 0.12 -0.4
477,840 - MPMX19_05756 0.12 -1.9
477,931 + MPMX19_05756 0.26 -0.8
477,931 + MPMX19_05756 0.26 -0.3
477,931 + MPMX19_05756 0.26 -0.3
477,931 + MPMX19_05756 0.26 -1.4
477,931 + MPMX19_05756 0.26 -2.0
477,931 + MPMX19_05756 0.26 -1.8
477,931 + MPMX19_05756 0.26 -1.1
477,931 + MPMX19_05756 0.26 -2.7
477,931 + MPMX19_05756 0.26 +0.8
477,932 - MPMX19_05756 0.26 -0.6
477,932 - MPMX19_05756 0.26 -1.8
477,932 - MPMX19_05756 0.26 +0.0
477,932 - MPMX19_05756 0.26 -0.2
477,932 - MPMX19_05756 0.26 -0.8
477,932 - MPMX19_05756 0.26 -0.8
477,932 - MPMX19_05756 0.26 -0.7
477,932 - MPMX19_05756 0.26 -0.5
477,932 - MPMX19_05756 0.26 -0.1
478,006 + MPMX19_05756 0.38 +0.3
478,006 + MPMX19_05756 0.38 -1.7
478,007 - MPMX19_05756 0.38 -0.6
478,007 - MPMX19_05756 0.38 +0.2
478,460 + -1.3
478,460 + -1.3
478,460 + -0.7
478,461 - -0.8
478,461 - -1.0

Or see this region's nucleotide sequence