Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05741 and MPMX19_05742 are separated by 236 nucleotides MPMX19_05742 and MPMX19_05743 overlap by 4 nucleotides MPMX19_05743 and MPMX19_05744 are separated by 17 nucleotides
MPMX19_05741: MPMX19_05741 - hypothetical protein, at 457,316 to 458,698
_05741
MPMX19_05742: MPMX19_05742 - hypothetical protein, at 458,935 to 459,600
_05742
MPMX19_05743: MPMX19_05743 - Anti-sigma-E factor ChrR, at 459,597 to 460,325
_05743
MPMX19_05744: MPMX19_05744 - hypothetical protein, at 460,343 to 462,427
_05744
Position (kb) 459
460
461 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 458.730 kb on - strand at 458.781 kb on - strand at 458.794 kb on - strand at 458.794 kb on - strand at 458.815 kb on + strand at 458.997 kb on + strand at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.154 kb on + strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.155 kb on - strand, within MPMX19_05742 at 459.241 kb on + strand, within MPMX19_05742 at 459.241 kb on + strand, within MPMX19_05742 at 459.242 kb on - strand, within MPMX19_05742 at 459.242 kb on - strand, within MPMX19_05742 at 459.242 kb on - strand, within MPMX19_05742 at 459.242 kb on - strand, within MPMX19_05742 at 459.242 kb on - strand, within MPMX19_05742 at 459.242 kb on - strand, within MPMX19_05742 at 459.672 kb on + strand, within MPMX19_05743 at 459.672 kb on + strand, within MPMX19_05743 at 459.672 kb on + strand, within MPMX19_05743 at 459.672 kb on + strand, within MPMX19_05743 at 459.672 kb on + strand, within MPMX19_05743 at 459.672 kb on + strand, within MPMX19_05743 at 459.672 kb on + strand, within MPMX19_05743 at 459.673 kb on - strand, within MPMX19_05743 at 459.673 kb on - strand, within MPMX19_05743 at 459.673 kb on - strand, within MPMX19_05743 at 459.969 kb on + strand, within MPMX19_05743 at 459.969 kb on + strand, within MPMX19_05743 at 459.969 kb on + strand, within MPMX19_05743 at 459.969 kb on + strand, within MPMX19_05743 at 459.969 kb on + strand, within MPMX19_05743 at 459.969 kb on + strand, within MPMX19_05743 at 459.969 kb on + strand, within MPMX19_05743 at 459.969 kb on + strand, within MPMX19_05743 at 459.969 kb on + strand, within MPMX19_05743 at 459.969 kb on + strand, within MPMX19_05743 at 459.969 kb on + strand, within MPMX19_05743 at 459.969 kb on + strand, within MPMX19_05743 at 459.969 kb on + strand, within MPMX19_05743 at 459.969 kb on + strand, within MPMX19_05743 at 459.970 kb on - strand, within MPMX19_05743 at 459.970 kb on - strand, within MPMX19_05743 at 459.970 kb on - strand, within MPMX19_05743 at 459.970 kb on - strand, within MPMX19_05743 at 459.970 kb on - strand, within MPMX19_05743 at 459.970 kb on - strand, within MPMX19_05743 at 459.970 kb on - strand, within MPMX19_05743 at 459.970 kb on - strand, within MPMX19_05743 at 459.970 kb on - strand, within MPMX19_05743 at 459.970 kb on - strand, within MPMX19_05743 at 459.970 kb on - strand, within MPMX19_05743 at 459.970 kb on - strand, within MPMX19_05743 at 459.970 kb on - strand, within MPMX19_05743 at 459.970 kb on - strand, within MPMX19_05743 at 459.970 kb on - strand, within MPMX19_05743 at 459.970 kb on - strand, within MPMX19_05743 at 459.970 kb on - strand, within MPMX19_05743 at 459.970 kb on - strand, within MPMX19_05743 at 459.970 kb on - strand, within MPMX19_05743 at 460.044 kb on - strand, within MPMX19_05743 at 460.170 kb on + strand, within MPMX19_05743 at 460.171 kb on - strand, within MPMX19_05743 at 460.323 kb on + strand at 460.324 kb on - strand at 460.324 kb on - strand at 460.324 kb on - strand at 461.277 kb on - strand, within MPMX19_05744 at 461.277 kb on - strand, within MPMX19_05744 at 461.277 kb on - strand, within MPMX19_05744
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 458,730 - -0.3 458,781 - -1.6 458,794 - -1.0 458,794 - -1.1 458,815 + -1.7 458,997 + -2.0 459,154 + MPMX19_05742 0.33 -0.5 459,154 + MPMX19_05742 0.33 +1.0 459,154 + MPMX19_05742 0.33 -1.0 459,154 + MPMX19_05742 0.33 -2.4 459,154 + MPMX19_05742 0.33 +3.0 459,154 + MPMX19_05742 0.33 -1.0 459,154 + MPMX19_05742 0.33 -0.3 459,154 + MPMX19_05742 0.33 -1.0 459,154 + MPMX19_05742 0.33 +0.3 459,154 + MPMX19_05742 0.33 -0.4 459,154 + MPMX19_05742 0.33 -1.7 459,154 + MPMX19_05742 0.33 -0.1 459,154 + MPMX19_05742 0.33 -1.4 459,154 + MPMX19_05742 0.33 -0.9 459,154 + MPMX19_05742 0.33 -1.2 459,154 + MPMX19_05742 0.33 +0.3 459,154 + MPMX19_05742 0.33 -0.6 459,154 + MPMX19_05742 0.33 -1.1 459,154 + MPMX19_05742 0.33 -1.4 459,154 + MPMX19_05742 0.33 -2.7 459,154 + MPMX19_05742 0.33 -1.6 459,154 + MPMX19_05742 0.33 +0.2 459,154 + MPMX19_05742 0.33 -0.9 459,155 - MPMX19_05742 0.33 -1.3 459,155 - MPMX19_05742 0.33 +0.2 459,155 - MPMX19_05742 0.33 -1.3 459,155 - MPMX19_05742 0.33 -2.0 459,155 - MPMX19_05742 0.33 -0.3 459,155 - MPMX19_05742 0.33 -1.4 459,155 - MPMX19_05742 0.33 +0.0 459,155 - MPMX19_05742 0.33 -0.1 459,155 - MPMX19_05742 0.33 +0.3 459,155 - MPMX19_05742 0.33 +0.4 459,155 - MPMX19_05742 0.33 +0.3 459,155 - MPMX19_05742 0.33 -0.5 459,155 - MPMX19_05742 0.33 -2.4 459,155 - MPMX19_05742 0.33 -0.3 459,155 - MPMX19_05742 0.33 -2.6 459,155 - MPMX19_05742 0.33 -1.2 459,155 - MPMX19_05742 0.33 -0.7 459,155 - MPMX19_05742 0.33 +0.4 459,155 - MPMX19_05742 0.33 -0.4 459,155 - MPMX19_05742 0.33 -0.3 459,155 - MPMX19_05742 0.33 -0.4 459,155 - MPMX19_05742 0.33 -2.8 459,155 - MPMX19_05742 0.33 -1.9 459,241 + MPMX19_05742 0.46 -1.1 459,241 + MPMX19_05742 0.46 -0.5 459,242 - MPMX19_05742 0.46 -1.4 459,242 - MPMX19_05742 0.46 +0.0 459,242 - MPMX19_05742 0.46 -2.5 459,242 - MPMX19_05742 0.46 -0.8 459,242 - MPMX19_05742 0.46 -1.7 459,242 - MPMX19_05742 0.46 -1.3 459,672 + MPMX19_05743 0.10 -0.4 459,672 + MPMX19_05743 0.10 -1.1 459,672 + MPMX19_05743 0.10 +1.0 459,672 + MPMX19_05743 0.10 -1.6 459,672 + MPMX19_05743 0.10 -1.3 459,672 + MPMX19_05743 0.10 +0.6 459,672 + MPMX19_05743 0.10 +1.2 459,673 - MPMX19_05743 0.10 -0.1 459,673 - MPMX19_05743 0.10 -0.3 459,673 - MPMX19_05743 0.10 +0.0 459,969 + MPMX19_05743 0.51 -0.0 459,969 + MPMX19_05743 0.51 -1.1 459,969 + MPMX19_05743 0.51 -0.8 459,969 + MPMX19_05743 0.51 -0.2 459,969 + MPMX19_05743 0.51 +0.0 459,969 + MPMX19_05743 0.51 +0.9 459,969 + MPMX19_05743 0.51 -1.2 459,969 + MPMX19_05743 0.51 -0.9 459,969 + MPMX19_05743 0.51 -2.4 459,969 + MPMX19_05743 0.51 -0.3 459,969 + MPMX19_05743 0.51 -1.1 459,969 + MPMX19_05743 0.51 -0.7 459,969 + MPMX19_05743 0.51 +0.0 459,969 + MPMX19_05743 0.51 -1.4 459,970 - MPMX19_05743 0.51 -0.5 459,970 - MPMX19_05743 0.51 -2.2 459,970 - MPMX19_05743 0.51 +0.2 459,970 - MPMX19_05743 0.51 +0.6 459,970 - MPMX19_05743 0.51 -0.4 459,970 - MPMX19_05743 0.51 +0.0 459,970 - MPMX19_05743 0.51 +0.4 459,970 - MPMX19_05743 0.51 -0.8 459,970 - MPMX19_05743 0.51 +0.0 459,970 - MPMX19_05743 0.51 +1.3 459,970 - MPMX19_05743 0.51 +0.2 459,970 - MPMX19_05743 0.51 -1.3 459,970 - MPMX19_05743 0.51 -1.7 459,970 - MPMX19_05743 0.51 +2.0 459,970 - MPMX19_05743 0.51 -0.6 459,970 - MPMX19_05743 0.51 -1.7 459,970 - MPMX19_05743 0.51 -0.3 459,970 - MPMX19_05743 0.51 +0.7 459,970 - MPMX19_05743 0.51 -0.1 460,044 - MPMX19_05743 0.61 -0.8 460,170 + MPMX19_05743 0.79 -0.6 460,171 - MPMX19_05743 0.79 -0.2 460,323 + +0.1 460,324 - +0.1 460,324 - -0.8 460,324 - -1.3 461,277 - MPMX19_05744 0.45 -0.2 461,277 - MPMX19_05744 0.45 -1.7 461,277 - MPMX19_05744 0.45 -0.8
Or see this region's nucleotide sequence