Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05728 and MPMX19_05729 are separated by 25 nucleotides MPMX19_05729 and MPMX19_05730 are separated by 96 nucleotides MPMX19_05730 and MPMX19_05731 are separated by 64 nucleotides
MPMX19_05728: MPMX19_05728 - Glyoxylate/hydroxypyruvate reductase B, at 446,839 to 447,792
_05728
MPMX19_05729: MPMX19_05729 - hypothetical protein, at 447,818 to 448,570
_05729
MPMX19_05730: MPMX19_05730 - hypothetical protein, at 448,667 to 449,161
_05730
MPMX19_05731: MPMX19_05731 - hypothetical protein, at 449,226 to 450,509
_05731
Position (kb) 448
449
450 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 447.692 kb on - strand, within MPMX19_05728 at 447.709 kb on + strand at 447.709 kb on + strand at 447.710 kb on - strand at 447.721 kb on + strand at 447.721 kb on + strand at 447.721 kb on + strand at 447.721 kb on + strand at 447.722 kb on - strand at 448.313 kb on + strand, within MPMX19_05729 at 448.314 kb on - strand, within MPMX19_05729 at 448.314 kb on - strand, within MPMX19_05729 at 448.314 kb on - strand, within MPMX19_05729 at 448.314 kb on - strand, within MPMX19_05729 at 448.314 kb on - strand, within MPMX19_05729 at 448.314 kb on - strand, within MPMX19_05729 at 448.370 kb on + strand, within MPMX19_05729 at 448.370 kb on + strand, within MPMX19_05729 at 448.370 kb on + strand, within MPMX19_05729 at 448.370 kb on + strand, within MPMX19_05729 at 448.370 kb on + strand, within MPMX19_05729 at 448.370 kb on + strand, within MPMX19_05729 at 448.371 kb on - strand, within MPMX19_05729 at 448.371 kb on - strand, within MPMX19_05729 at 448.371 kb on - strand, within MPMX19_05729 at 448.371 kb on - strand, within MPMX19_05729 at 448.371 kb on - strand, within MPMX19_05729 at 448.371 kb on - strand, within MPMX19_05729 at 448.371 kb on - strand, within MPMX19_05729 at 448.424 kb on + strand, within MPMX19_05729 at 448.424 kb on + strand, within MPMX19_05729 at 448.425 kb on - strand, within MPMX19_05729 at 448.425 kb on - strand, within MPMX19_05729 at 448.425 kb on - strand, within MPMX19_05729 at 448.425 kb on - strand, within MPMX19_05729 at 448.425 kb on - strand, within MPMX19_05729 at 448.594 kb on + strand at 448.610 kb on + strand at 448.610 kb on + strand at 448.610 kb on + strand at 448.610 kb on + strand at 448.611 kb on - strand at 448.611 kb on - strand at 448.611 kb on - strand at 448.631 kb on - strand at 448.631 kb on - strand at 449.429 kb on + strand, within MPMX19_05731 at 449.430 kb on - strand, within MPMX19_05731 at 449.430 kb on - strand, within MPMX19_05731 at 449.430 kb on - strand, within MPMX19_05731 at 449.431 kb on + strand, within MPMX19_05731 at 449.431 kb on + strand, within MPMX19_05731 at 449.431 kb on + strand, within MPMX19_05731 at 449.431 kb on + strand, within MPMX19_05731 at 449.432 kb on - strand, within MPMX19_05731 at 449.432 kb on - strand, within MPMX19_05731 at 449.432 kb on - strand, within MPMX19_05731 at 449.432 kb on - strand, within MPMX19_05731 at 449.432 kb on - strand, within MPMX19_05731 at 449.737 kb on + strand, within MPMX19_05731 at 449.737 kb on + strand, within MPMX19_05731 at 449.738 kb on - strand, within MPMX19_05731 at 449.738 kb on - strand, within MPMX19_05731 at 449.738 kb on - strand, within MPMX19_05731 at 449.738 kb on - strand, within MPMX19_05731 at 449.738 kb on - strand, within MPMX19_05731 at 449.738 kb on - strand, within MPMX19_05731
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 447,692 - MPMX19_05728 0.89 +1.0 447,709 + +0.4 447,709 + -1.6 447,710 - +0.6 447,721 + -0.2 447,721 + +0.6 447,721 + -0.8 447,721 + +0.4 447,722 - +0.0 448,313 + MPMX19_05729 0.66 -0.4 448,314 - MPMX19_05729 0.66 +0.0 448,314 - MPMX19_05729 0.66 +1.4 448,314 - MPMX19_05729 0.66 -0.2 448,314 - MPMX19_05729 0.66 +0.2 448,314 - MPMX19_05729 0.66 -0.4 448,314 - MPMX19_05729 0.66 +0.3 448,370 + MPMX19_05729 0.73 -0.8 448,370 + MPMX19_05729 0.73 +0.4 448,370 + MPMX19_05729 0.73 +1.7 448,370 + MPMX19_05729 0.73 -0.3 448,370 + MPMX19_05729 0.73 -0.3 448,370 + MPMX19_05729 0.73 -1.4 448,371 - MPMX19_05729 0.73 -0.6 448,371 - MPMX19_05729 0.73 -1.9 448,371 - MPMX19_05729 0.73 -0.8 448,371 - MPMX19_05729 0.73 -1.1 448,371 - MPMX19_05729 0.73 +0.4 448,371 - MPMX19_05729 0.73 -0.2 448,371 - MPMX19_05729 0.73 -0.5 448,424 + MPMX19_05729 0.80 -1.7 448,424 + MPMX19_05729 0.80 +0.9 448,425 - MPMX19_05729 0.81 -0.0 448,425 - MPMX19_05729 0.81 -2.0 448,425 - MPMX19_05729 0.81 -1.0 448,425 - MPMX19_05729 0.81 -2.1 448,425 - MPMX19_05729 0.81 -2.8 448,594 + +0.5 448,610 + +0.0 448,610 + -0.3 448,610 + -1.7 448,610 + -1.0 448,611 - -0.8 448,611 - -1.3 448,611 - -0.3 448,631 - -0.6 448,631 - +0.0 449,429 + MPMX19_05731 0.16 +1.4 449,430 - MPMX19_05731 0.16 +0.4 449,430 - MPMX19_05731 0.16 -1.3 449,430 - MPMX19_05731 0.16 +0.2 449,431 + MPMX19_05731 0.16 -0.7 449,431 + MPMX19_05731 0.16 -1.4 449,431 + MPMX19_05731 0.16 -1.9 449,431 + MPMX19_05731 0.16 -1.8 449,432 - MPMX19_05731 0.16 +0.2 449,432 - MPMX19_05731 0.16 -1.6 449,432 - MPMX19_05731 0.16 +0.4 449,432 - MPMX19_05731 0.16 -1.7 449,432 - MPMX19_05731 0.16 -0.1 449,737 + MPMX19_05731 0.40 +0.7 449,737 + MPMX19_05731 0.40 -0.4 449,738 - MPMX19_05731 0.40 +0.8 449,738 - MPMX19_05731 0.40 -0.8 449,738 - MPMX19_05731 0.40 +1.3 449,738 - MPMX19_05731 0.40 -0.6 449,738 - MPMX19_05731 0.40 -0.5 449,738 - MPMX19_05731 0.40 -0.4
Or see this region's nucleotide sequence