Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05680

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05679 and MPMX19_05680 are separated by 268 nucleotidesMPMX19_05680 and MPMX19_05681 are separated by 257 nucleotidesMPMX19_05681 and MPMX19_05682 are separated by 113 nucleotidesMPMX19_05682 and MPMX19_05683 are separated by 48 nucleotides MPMX19_05679: MPMX19_05679 - Flagellum-specific ATP synthase, at 396,808 to 398,145 _05679 MPMX19_05680: MPMX19_05680 - Cell cycle response regulator CtrA, at 398,414 to 399,154 _05680 MPMX19_05681: MPMX19_05681 - Cold shock protein CspA, at 399,412 to 399,621 _05681 MPMX19_05682: MPMX19_05682 - hypothetical protein, at 399,735 to 399,947 _05682 MPMX19_05683: MPMX19_05683 - hypothetical protein, at 399,996 to 400,220 _05683 Position (kb) 398 399 400Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.436 kb on + strand, within MPMX19_05679at 397.437 kb on - strand, within MPMX19_05679at 397.437 kb on - strand, within MPMX19_05679at 397.437 kb on - strand, within MPMX19_05679at 397.437 kb on - strand, within MPMX19_05679at 397.437 kb on - strand, within MPMX19_05679at 397.437 kb on - strand, within MPMX19_05679at 397.437 kb on - strand, within MPMX19_05679at 397.437 kb on - strand, within MPMX19_05679at 397.437 kb on - strand, within MPMX19_05679at 397.437 kb on - strand, within MPMX19_05679at 397.437 kb on - strand, within MPMX19_05679at 397.437 kb on - strand, within MPMX19_05679at 397.437 kb on - strand, within MPMX19_05679at 397.437 kb on - strand, within MPMX19_05679at 397.437 kb on - strand, within MPMX19_05679at 398.155 kb on - strandat 398.199 kb on + strandat 398.199 kb on + strandat 398.199 kb on + strandat 398.199 kb on + strandat 398.200 kb on - strandat 398.200 kb on - strandat 398.202 kb on + strandat 398.202 kb on + strandat 398.202 kb on + strandat 398.202 kb on + strandat 398.203 kb on - strandat 398.203 kb on - strandat 398.203 kb on - strandat 398.203 kb on - strandat 398.203 kb on - strandat 398.203 kb on - strandat 398.203 kb on - strandat 398.203 kb on - strandat 398.203 kb on - strandat 398.209 kb on + strandat 398.209 kb on + strandat 398.209 kb on + strandat 398.210 kb on - strandat 398.268 kb on - strandat 398.277 kb on + strandat 398.277 kb on + strandat 398.277 kb on + strandat 398.277 kb on + strandat 398.277 kb on + strandat 398.278 kb on - strandat 398.278 kb on - strandat 398.278 kb on - strandat 398.297 kb on + strandat 398.297 kb on + strandat 398.314 kb on + strandat 398.314 kb on + strandat 398.314 kb on + strandat 398.314 kb on + strandat 398.314 kb on + strandat 398.314 kb on + strandat 398.314 kb on + strandat 398.315 kb on - strandat 398.315 kb on - strandat 398.324 kb on - strandat 398.540 kb on + strand, within MPMX19_05680at 398.540 kb on + strand, within MPMX19_05680at 398.591 kb on + strand, within MPMX19_05680at 398.705 kb on + strand, within MPMX19_05680at 398.814 kb on + strand, within MPMX19_05680at 398.814 kb on + strand, within MPMX19_05680at 398.814 kb on + strand, within MPMX19_05680at 398.876 kb on + strand, within MPMX19_05680at 398.877 kb on - strand, within MPMX19_05680at 398.948 kb on + strand, within MPMX19_05680at 399.041 kb on + strand, within MPMX19_05680at 399.041 kb on + strand, within MPMX19_05680at 399.041 kb on + strand, within MPMX19_05680at 399.041 kb on + strand, within MPMX19_05680at 399.041 kb on + strand, within MPMX19_05680at 399.041 kb on + strand, within MPMX19_05680at 399.041 kb on + strand, within MPMX19_05680at 399.041 kb on + strand, within MPMX19_05680at 399.041 kb on + strand, within MPMX19_05680at 399.041 kb on + strand, within MPMX19_05680at 399.041 kb on + strand, within MPMX19_05680at 399.041 kb on + strand, within MPMX19_05680at 399.068 kb on + strand, within MPMX19_05680at 399.068 kb on + strand, within MPMX19_05680at 399.237 kb on + strandat 399.237 kb on + strandat 399.237 kb on + strandat 399.238 kb on - strandat 399.238 kb on - strandat 399.238 kb on - strandat 399.399 kb on - strandat 399.559 kb on + strand, within MPMX19_05681at 399.559 kb on + strand, within MPMX19_05681at 399.560 kb on - strand, within MPMX19_05681at 399.753 kb on + strandat 399.753 kb on + strandat 399.753 kb on + strandat 399.753 kb on + strandat 399.753 kb on + strandat 399.753 kb on + strandat 399.753 kb on + strandat 399.753 kb on + strandat 399.753 kb on + strandat 399.753 kb on + strandat 399.754 kb on - strandat 399.754 kb on - strandat 399.754 kb on - strandat 399.754 kb on - strandat 399.754 kb on - strandat 399.981 kb on + strandat 399.982 kb on - strandat 399.982 kb on - strandat 399.982 kb on - strandat 400.053 kb on + strand, within MPMX19_05683at 400.053 kb on + strand, within MPMX19_05683at 400.053 kb on + strand, within MPMX19_05683at 400.054 kb on - strand, within MPMX19_05683at 400.137 kb on + strand, within MPMX19_05683at 400.137 kb on + strand, within MPMX19_05683at 400.137 kb on + strand, within MPMX19_05683at 400.137 kb on + strand, within MPMX19_05683at 400.137 kb on + strand, within MPMX19_05683at 400.137 kb on + strand, within MPMX19_05683at 400.137 kb on + strand, within MPMX19_05683at 400.137 kb on + strand, within MPMX19_05683at 400.138 kb on - strand, within MPMX19_05683at 400.138 kb on - strand, within MPMX19_05683at 400.138 kb on - strand, within MPMX19_05683at 400.138 kb on - strand, within MPMX19_05683at 400.138 kb on - strand, within MPMX19_05683at 400.138 kb on - strand, within MPMX19_05683

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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397,436 + MPMX19_05679 0.47 -1.4
397,436 + MPMX19_05679 0.47 +0.6
397,436 + MPMX19_05679 0.47 -1.4
397,436 + MPMX19_05679 0.47 -0.8
397,436 + MPMX19_05679 0.47 -0.4
397,436 + MPMX19_05679 0.47 -1.5
397,436 + MPMX19_05679 0.47 -0.4
397,436 + MPMX19_05679 0.47 -1.5
397,436 + MPMX19_05679 0.47 -2.1
397,436 + MPMX19_05679 0.47 -1.6
397,436 + MPMX19_05679 0.47 -0.9
397,436 + MPMX19_05679 0.47 -0.1
397,436 + MPMX19_05679 0.47 -0.7
397,436 + MPMX19_05679 0.47 +0.0
397,436 + MPMX19_05679 0.47 -0.2
397,436 + MPMX19_05679 0.47 -0.2
397,436 + MPMX19_05679 0.47 -0.3
397,436 + MPMX19_05679 0.47 +0.2
397,436 + MPMX19_05679 0.47 -1.1
397,436 + MPMX19_05679 0.47 -1.7
397,436 + MPMX19_05679 0.47 -0.1
397,436 + MPMX19_05679 0.47 +0.5
397,436 + MPMX19_05679 0.47 +0.2
397,437 - MPMX19_05679 0.47 +0.9
397,437 - MPMX19_05679 0.47 -0.9
397,437 - MPMX19_05679 0.47 -0.6
397,437 - MPMX19_05679 0.47 -0.7
397,437 - MPMX19_05679 0.47 -1.6
397,437 - MPMX19_05679 0.47 -0.6
397,437 - MPMX19_05679 0.47 -0.7
397,437 - MPMX19_05679 0.47 -1.1
397,437 - MPMX19_05679 0.47 -0.7
397,437 - MPMX19_05679 0.47 +0.0
397,437 - MPMX19_05679 0.47 -1.3
397,437 - MPMX19_05679 0.47 -0.3
397,437 - MPMX19_05679 0.47 -1.1
397,437 - MPMX19_05679 0.47 -2.4
397,437 - MPMX19_05679 0.47 -0.1
398,155 - -0.6
398,199 + -0.4
398,199 + -1.0
398,199 + -0.9
398,199 + -1.4
398,200 - +1.0
398,200 - -0.1
398,202 + -1.1
398,202 + -1.0
398,202 + +0.2
398,202 + +0.6
398,203 - -0.3
398,203 - +0.6
398,203 - +1.0
398,203 - -0.7
398,203 - -0.8
398,203 - +0.1
398,203 - -1.7
398,203 - -0.7
398,203 - -1.1
398,209 + +0.0
398,209 + -0.9
398,209 + -1.1
398,210 - -2.1
398,268 - -1.2
398,277 + -0.7
398,277 + +0.3
398,277 + +1.4
398,277 + -1.9
398,277 + -2.5
398,278 - +0.0
398,278 - -1.4
398,278 - -1.4
398,297 + -1.5
398,297 + -1.3
398,314 + -2.4
398,314 + +0.3
398,314 + -1.4
398,314 + -1.9
398,314 + +0.4
398,314 + -3.4
398,314 + -1.4
398,315 - -2.1
398,315 - +0.7
398,324 - -0.8
398,540 + MPMX19_05680 0.17 +0.6
398,540 + MPMX19_05680 0.17 +0.4
398,591 + MPMX19_05680 0.24 -0.6
398,705 + MPMX19_05680 0.39 -0.8
398,814 + MPMX19_05680 0.54 -1.0
398,814 + MPMX19_05680 0.54 +0.8
398,814 + MPMX19_05680 0.54 -0.2
398,876 + MPMX19_05680 0.62 -1.1
398,877 - MPMX19_05680 0.62 -0.3
398,948 + MPMX19_05680 0.72 -1.4
399,041 + MPMX19_05680 0.85 +0.6
399,041 + MPMX19_05680 0.85 -0.6
399,041 + MPMX19_05680 0.85 +1.0
399,041 + MPMX19_05680 0.85 -1.8
399,041 + MPMX19_05680 0.85 -1.0
399,041 + MPMX19_05680 0.85 -0.1
399,041 + MPMX19_05680 0.85 +1.0
399,041 + MPMX19_05680 0.85 -0.3
399,041 + MPMX19_05680 0.85 -0.3
399,041 + MPMX19_05680 0.85 -1.3
399,041 + MPMX19_05680 0.85 +1.0
399,041 + MPMX19_05680 0.85 -2.2
399,068 + MPMX19_05680 0.88 +2.0
399,068 + MPMX19_05680 0.88 -1.9
399,237 + -1.3
399,237 + -0.1
399,237 + +1.0
399,238 - -1.0
399,238 - -1.7
399,238 - -1.4
399,399 - -1.6
399,559 + MPMX19_05681 0.70 -1.4
399,559 + MPMX19_05681 0.70 -0.1
399,560 - MPMX19_05681 0.70 -1.1
399,753 + +0.4
399,753 + +0.2
399,753 + -0.4
399,753 + -1.3
399,753 + -1.1
399,753 + -0.9
399,753 + -0.6
399,753 + -0.3
399,753 + -1.0
399,753 + -1.0
399,754 - -0.5
399,754 - -0.2
399,754 - +0.2
399,754 - -1.1
399,754 - -0.3
399,981 + -0.6
399,982 - -0.8
399,982 - -0.7
399,982 - -0.9
400,053 + MPMX19_05683 0.25 -0.6
400,053 + MPMX19_05683 0.25 -1.3
400,053 + MPMX19_05683 0.25 -0.4
400,054 - MPMX19_05683 0.26 -1.1
400,137 + MPMX19_05683 0.63 +0.0
400,137 + MPMX19_05683 0.63 -1.1
400,137 + MPMX19_05683 0.63 -2.6
400,137 + MPMX19_05683 0.63 -1.8
400,137 + MPMX19_05683 0.63 -1.0
400,137 + MPMX19_05683 0.63 -1.1
400,137 + MPMX19_05683 0.63 -1.0
400,137 + MPMX19_05683 0.63 -1.8
400,138 - MPMX19_05683 0.63 -0.3
400,138 - MPMX19_05683 0.63 -1.9
400,138 - MPMX19_05683 0.63 +0.0
400,138 - MPMX19_05683 0.63 -1.4
400,138 - MPMX19_05683 0.63 -1.3
400,138 - MPMX19_05683 0.63 -0.7

Or see this region's nucleotide sequence