Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05650 and MPMX19_05651 are separated by 109 nucleotides MPMX19_05651 and MPMX19_05652 are separated by 244 nucleotides MPMX19_05652 and MPMX19_05653 are separated by 88 nucleotides MPMX19_05653 and MPMX19_05654 are separated by 74 nucleotides
MPMX19_05650: MPMX19_05650 - Ribonuclease HII, at 368,547 to 369,212
_05650
MPMX19_05651: MPMX19_05651 - hypothetical protein, at 369,322 to 369,963
_05651
MPMX19_05652: MPMX19_05652 - hypothetical protein, at 370,208 to 370,822
_05652
MPMX19_05653: MPMX19_05653 - Leucine-responsive regulatory protein, at 370,911 to 371,390
_05653
MPMX19_05654: MPMX19_05654 - hypothetical protein, at 371,465 to 372,154
_05654
Position (kb) 370
371 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 369.245 kb on + strand at 369.245 kb on + strand at 369.245 kb on + strand at 369.246 kb on - strand at 369.246 kb on - strand at 369.270 kb on + strand at 369.335 kb on + strand at 369.335 kb on + strand at 369.336 kb on - strand at 369.336 kb on - strand at 369.386 kb on + strand at 369.386 kb on + strand at 369.386 kb on + strand at 369.386 kb on + strand at 369.386 kb on + strand at 369.387 kb on - strand, within MPMX19_05651 at 369.541 kb on + strand, within MPMX19_05651 at 369.541 kb on + strand, within MPMX19_05651 at 369.541 kb on + strand, within MPMX19_05651 at 369.541 kb on + strand, within MPMX19_05651 at 369.541 kb on + strand, within MPMX19_05651 at 369.541 kb on + strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.592 kb on + strand, within MPMX19_05651 at 369.592 kb on + strand, within MPMX19_05651 at 369.592 kb on + strand, within MPMX19_05651 at 369.593 kb on - strand, within MPMX19_05651 at 369.593 kb on - strand, within MPMX19_05651 at 369.622 kb on + strand, within MPMX19_05651 at 369.622 kb on + strand, within MPMX19_05651 at 369.622 kb on + strand, within MPMX19_05651 at 369.622 kb on + strand, within MPMX19_05651 at 369.622 kb on + strand, within MPMX19_05651 at 369.622 kb on + strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.663 kb on + strand, within MPMX19_05651 at 369.664 kb on - strand, within MPMX19_05651 at 369.664 kb on - strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.940 kb on + strand at 369.940 kb on + strand at 369.940 kb on + strand at 369.940 kb on + strand at 369.940 kb on + strand at 369.940 kb on + strand at 369.940 kb on + strand at 369.941 kb on - strand at 369.941 kb on - strand at 369.941 kb on - strand at 369.941 kb on - strand at 369.941 kb on - strand at 369.941 kb on - strand at 370.048 kb on - strand at 370.048 kb on - strand at 370.048 kb on - strand at 370.048 kb on - strand at 370.107 kb on + strand at 370.107 kb on + strand at 370.107 kb on + strand at 370.108 kb on - strand at 370.108 kb on - strand at 370.108 kb on - strand at 370.182 kb on + strand at 370.182 kb on + strand at 370.183 kb on - strand at 370.183 kb on - strand at 370.183 kb on - strand at 370.183 kb on - strand at 370.202 kb on + strand at 370.202 kb on + strand at 370.202 kb on + strand at 370.202 kb on + strand at 370.203 kb on - strand at 370.538 kb on + strand, within MPMX19_05652 at 370.556 kb on + strand, within MPMX19_05652 at 370.556 kb on + strand, within MPMX19_05652 at 370.556 kb on + strand, within MPMX19_05652 at 370.556 kb on + strand, within MPMX19_05652 at 370.557 kb on - strand, within MPMX19_05652 at 370.596 kb on - strand, within MPMX19_05652 at 370.596 kb on - strand, within MPMX19_05652 at 370.596 kb on - strand, within MPMX19_05652 at 370.596 kb on - strand, within MPMX19_05652 at 371.029 kb on + strand, within MPMX19_05653 at 371.029 kb on + strand, within MPMX19_05653 at 371.030 kb on - strand, within MPMX19_05653 at 371.030 kb on - strand, within MPMX19_05653 at 371.030 kb on - strand, within MPMX19_05653 at 371.030 kb on - strand, within MPMX19_05653 at 371.030 kb on - strand, within MPMX19_05653 at 371.065 kb on + strand, within MPMX19_05653 at 371.065 kb on + strand, within MPMX19_05653 at 371.065 kb on + strand, within MPMX19_05653 at 371.065 kb on + strand, within MPMX19_05653 at 371.065 kb on + strand, within MPMX19_05653 at 371.065 kb on + strand, within MPMX19_05653 at 371.066 kb on - strand, within MPMX19_05653 at 371.066 kb on - strand, within MPMX19_05653 at 371.066 kb on - strand, within MPMX19_05653 at 371.066 kb on - strand, within MPMX19_05653 at 371.227 kb on + strand, within MPMX19_05653 at 371.227 kb on + strand, within MPMX19_05653 at 371.228 kb on - strand, within MPMX19_05653 at 371.432 kb on + strand at 371.557 kb on + strand, within MPMX19_05654 at 371.557 kb on + strand, within MPMX19_05654 at 371.558 kb on - strand, within MPMX19_05654 at 371.558 kb on - strand, within MPMX19_05654 at 371.558 kb on - strand, within MPMX19_05654 at 371.558 kb on - strand, within MPMX19_05654 at 371.558 kb on - strand, within MPMX19_05654 at 371.576 kb on + strand, within MPMX19_05654 at 371.576 kb on + strand, within MPMX19_05654 at 371.576 kb on + strand, within MPMX19_05654 at 371.577 kb on - strand, within MPMX19_05654 at 371.577 kb on - strand, within MPMX19_05654
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 369,245 + -1.2 369,245 + -1.1 369,245 + -1.4 369,246 - -0.3 369,246 - -2.8 369,270 + -0.1 369,335 + +0.1 369,335 + -0.7 369,336 - -1.2 369,336 - -0.4 369,386 + -1.3 369,386 + +1.0 369,386 + +0.2 369,386 + -0.6 369,386 + +1.0 369,387 - MPMX19_05651 0.10 -1.6 369,541 + MPMX19_05651 0.34 -0.3 369,541 + MPMX19_05651 0.34 +0.8 369,541 + MPMX19_05651 0.34 -1.0 369,541 + MPMX19_05651 0.34 -1.5 369,541 + MPMX19_05651 0.34 -1.1 369,541 + MPMX19_05651 0.34 -0.8 369,542 - MPMX19_05651 0.34 -0.9 369,542 - MPMX19_05651 0.34 +1.4 369,542 - MPMX19_05651 0.34 +0.8 369,542 - MPMX19_05651 0.34 -0.6 369,542 - MPMX19_05651 0.34 -1.7 369,542 - MPMX19_05651 0.34 -2.1 369,542 - MPMX19_05651 0.34 +0.2 369,542 - MPMX19_05651 0.34 -1.6 369,542 - MPMX19_05651 0.34 +0.0 369,542 - MPMX19_05651 0.34 -0.4 369,542 - MPMX19_05651 0.34 +0.3 369,592 + MPMX19_05651 0.42 -1.9 369,592 + MPMX19_05651 0.42 -0.3 369,592 + MPMX19_05651 0.42 +0.2 369,593 - MPMX19_05651 0.42 +0.4 369,593 - MPMX19_05651 0.42 -0.4 369,622 + MPMX19_05651 0.47 +0.1 369,622 + MPMX19_05651 0.47 +0.4 369,622 + MPMX19_05651 0.47 +0.8 369,622 + MPMX19_05651 0.47 -1.6 369,622 + MPMX19_05651 0.47 -1.2 369,622 + MPMX19_05651 0.47 -0.2 369,623 - MPMX19_05651 0.47 +1.0 369,623 - MPMX19_05651 0.47 -1.5 369,623 - MPMX19_05651 0.47 -0.9 369,623 - MPMX19_05651 0.47 -1.7 369,623 - MPMX19_05651 0.47 -1.1 369,623 - MPMX19_05651 0.47 -1.0 369,623 - MPMX19_05651 0.47 -2.2 369,623 - MPMX19_05651 0.47 +0.0 369,623 - MPMX19_05651 0.47 -0.6 369,623 - MPMX19_05651 0.47 -0.7 369,623 - MPMX19_05651 0.47 -0.0 369,623 - MPMX19_05651 0.47 -0.3 369,623 - MPMX19_05651 0.47 -1.3 369,663 + MPMX19_05651 0.53 -0.1 369,664 - MPMX19_05651 0.53 -0.6 369,664 - MPMX19_05651 0.53 -2.1 369,850 + MPMX19_05651 0.82 -1.0 369,850 + MPMX19_05651 0.82 -1.9 369,850 + MPMX19_05651 0.82 -0.5 369,850 + MPMX19_05651 0.82 -0.1 369,850 + MPMX19_05651 0.82 -1.7 369,850 + MPMX19_05651 0.82 +0.3 369,850 + MPMX19_05651 0.82 +0.9 369,850 + MPMX19_05651 0.82 -1.8 369,850 + MPMX19_05651 0.82 +0.2 369,850 + MPMX19_05651 0.82 -0.6 369,850 + MPMX19_05651 0.82 -0.2 369,850 + MPMX19_05651 0.82 -1.2 369,850 + MPMX19_05651 0.82 -1.3 369,851 - MPMX19_05651 0.82 -1.1 369,851 - MPMX19_05651 0.82 +0.6 369,851 - MPMX19_05651 0.82 -1.4 369,851 - MPMX19_05651 0.82 -0.7 369,851 - MPMX19_05651 0.82 -2.1 369,851 - MPMX19_05651 0.82 -1.6 369,851 - MPMX19_05651 0.82 -1.9 369,851 - MPMX19_05651 0.82 -1.0 369,851 - MPMX19_05651 0.82 -0.1 369,853 + MPMX19_05651 0.83 -1.7 369,853 + MPMX19_05651 0.83 +0.2 369,853 + MPMX19_05651 0.83 +0.2 369,853 + MPMX19_05651 0.83 -0.9 369,853 + MPMX19_05651 0.83 -0.4 369,853 + MPMX19_05651 0.83 -0.7 369,853 + MPMX19_05651 0.83 -0.4 369,853 + MPMX19_05651 0.83 -2.1 369,853 + MPMX19_05651 0.83 -1.0 369,853 + MPMX19_05651 0.83 -0.7 369,853 + MPMX19_05651 0.83 -1.0 369,853 + MPMX19_05651 0.83 +0.2 369,853 + MPMX19_05651 0.83 -0.3 369,853 + MPMX19_05651 0.83 -2.1 369,853 + MPMX19_05651 0.83 -0.4 369,853 + MPMX19_05651 0.83 -0.6 369,853 + MPMX19_05651 0.83 +0.7 369,853 + MPMX19_05651 0.83 -0.8 369,853 + MPMX19_05651 0.83 -0.6 369,853 + MPMX19_05651 0.83 -1.9 369,853 + MPMX19_05651 0.83 +0.8 369,853 + MPMX19_05651 0.83 -0.1 369,853 + MPMX19_05651 0.83 -1.3 369,853 + MPMX19_05651 0.83 -0.1 369,853 + MPMX19_05651 0.83 +0.7 369,853 + MPMX19_05651 0.83 +0.3 369,853 + MPMX19_05651 0.83 -0.6 369,853 + MPMX19_05651 0.83 -1.0 369,854 - MPMX19_05651 0.83 -0.4 369,854 - MPMX19_05651 0.83 +1.0 369,854 - MPMX19_05651 0.83 +0.7 369,854 - MPMX19_05651 0.83 -0.3 369,854 - MPMX19_05651 0.83 -1.3 369,854 - MPMX19_05651 0.83 -0.9 369,854 - MPMX19_05651 0.83 -1.0 369,854 - MPMX19_05651 0.83 -2.9 369,854 - MPMX19_05651 0.83 -0.1 369,854 - MPMX19_05651 0.83 -2.2 369,854 - MPMX19_05651 0.83 -0.8 369,854 - MPMX19_05651 0.83 +0.2 369,854 - MPMX19_05651 0.83 +0.1 369,854 - MPMX19_05651 0.83 +0.0 369,854 - MPMX19_05651 0.83 +0.3 369,854 - MPMX19_05651 0.83 -1.2 369,940 + -2.6 369,940 + -1.0 369,940 + +0.7 369,940 + +0.0 369,940 + -0.9 369,940 + -1.1 369,940 + +0.1 369,941 - -2.8 369,941 - -0.3 369,941 - -0.3 369,941 - -0.1 369,941 - -0.7 369,941 - -0.7 370,048 - -0.2 370,048 - -0.2 370,048 - -0.1 370,048 - +0.4 370,107 + +0.0 370,107 + -0.4 370,107 + +0.4 370,108 - +1.3 370,108 - -2.6 370,108 - +0.2 370,182 + -1.1 370,182 + -0.2 370,183 - +0.1 370,183 - +1.2 370,183 - -0.5 370,183 - +0.3 370,202 + +0.4 370,202 + -2.3 370,202 + -0.3 370,202 + -0.4 370,203 - -1.7 370,538 + MPMX19_05652 0.54 -1.1 370,556 + MPMX19_05652 0.57 -0.6 370,556 + MPMX19_05652 0.57 -1.3 370,556 + MPMX19_05652 0.57 -1.1 370,556 + MPMX19_05652 0.57 -1.0 370,557 - MPMX19_05652 0.57 -2.1 370,596 - MPMX19_05652 0.63 -1.0 370,596 - MPMX19_05652 0.63 +0.3 370,596 - MPMX19_05652 0.63 +0.3 370,596 - MPMX19_05652 0.63 +0.4 371,029 + MPMX19_05653 0.25 +0.4 371,029 + MPMX19_05653 0.25 +0.3 371,030 - MPMX19_05653 0.25 -1.7 371,030 - MPMX19_05653 0.25 +0.8 371,030 - MPMX19_05653 0.25 +0.6 371,030 - MPMX19_05653 0.25 -2.8 371,030 - MPMX19_05653 0.25 +0.1 371,065 + MPMX19_05653 0.32 -2.6 371,065 + MPMX19_05653 0.32 -0.7 371,065 + MPMX19_05653 0.32 -2.2 371,065 + MPMX19_05653 0.32 -1.7 371,065 + MPMX19_05653 0.32 -2.1 371,065 + MPMX19_05653 0.32 +0.0 371,066 - MPMX19_05653 0.32 -0.7 371,066 - MPMX19_05653 0.32 -1.6 371,066 - MPMX19_05653 0.32 -2.0 371,066 - MPMX19_05653 0.32 -0.2 371,227 + MPMX19_05653 0.66 -3.1 371,227 + MPMX19_05653 0.66 +0.0 371,228 - MPMX19_05653 0.66 +0.4 371,432 + -1.0 371,557 + MPMX19_05654 0.13 -0.6 371,557 + MPMX19_05654 0.13 +1.0 371,558 - MPMX19_05654 0.13 -0.4 371,558 - MPMX19_05654 0.13 +0.4 371,558 - MPMX19_05654 0.13 -0.9 371,558 - MPMX19_05654 0.13 -0.2 371,558 - MPMX19_05654 0.13 -1.4 371,576 + MPMX19_05654 0.16 -1.1 371,576 + MPMX19_05654 0.16 -1.5 371,576 + MPMX19_05654 0.16 -0.2 371,577 - MPMX19_05654 0.16 -0.9 371,577 - MPMX19_05654 0.16 +0.5
Or see this region's nucleotide sequence