Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05628

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05627 and MPMX19_05628 are separated by 60 nucleotidesMPMX19_05628 and MPMX19_05629 are separated by 131 nucleotides MPMX19_05627: MPMX19_05627 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 343,424 to 344,779 _05627 MPMX19_05628: MPMX19_05628 - dTDP-4-oxo-6-deoxy-D-allose reductase, at 344,840 to 345,835 _05628 MPMX19_05629: MPMX19_05629 - GDP-L-fucose synthase, at 345,967 to 346,932 _05629 Position (kb) 344 345 346Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 344.066 kb on + strand, within MPMX19_05627at 344.066 kb on + strand, within MPMX19_05627at 344.066 kb on + strand, within MPMX19_05627at 344.066 kb on + strand, within MPMX19_05627at 344.066 kb on + strand, within MPMX19_05627at 344.067 kb on - strand, within MPMX19_05627at 344.067 kb on - strand, within MPMX19_05627at 344.067 kb on - strand, within MPMX19_05627at 344.067 kb on - strand, within MPMX19_05627at 344.067 kb on - strand, within MPMX19_05627at 344.067 kb on - strand, within MPMX19_05627at 344.165 kb on + strand, within MPMX19_05627at 344.672 kb on + strandat 344.672 kb on + strandat 344.672 kb on + strandat 344.672 kb on + strandat 344.672 kb on + strandat 344.672 kb on + strandat 344.673 kb on - strandat 344.673 kb on - strandat 344.673 kb on - strandat 344.673 kb on - strandat 344.673 kb on - strandat 344.729 kb on + strandat 344.729 kb on + strandat 344.729 kb on + strandat 344.729 kb on + strandat 344.729 kb on + strandat 344.729 kb on + strandat 344.762 kb on + strandat 344.763 kb on - strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.849 kb on + strandat 344.850 kb on - strandat 344.850 kb on - strandat 344.850 kb on - strandat 344.850 kb on - strandat 344.850 kb on - strandat 344.850 kb on - strandat 344.850 kb on - strandat 344.850 kb on - strandat 344.850 kb on - strandat 344.850 kb on - strandat 344.850 kb on - strandat 344.953 kb on + strand, within MPMX19_05628at 344.953 kb on + strand, within MPMX19_05628at 344.953 kb on + strand, within MPMX19_05628at 345.092 kb on + strand, within MPMX19_05628at 345.093 kb on - strand, within MPMX19_05628at 345.206 kb on + strand, within MPMX19_05628at 345.206 kb on + strand, within MPMX19_05628at 345.206 kb on + strand, within MPMX19_05628at 345.206 kb on + strand, within MPMX19_05628at 345.206 kb on + strand, within MPMX19_05628at 345.207 kb on - strand, within MPMX19_05628at 345.278 kb on + strand, within MPMX19_05628at 345.278 kb on + strand, within MPMX19_05628at 345.278 kb on + strand, within MPMX19_05628at 345.284 kb on + strand, within MPMX19_05628at 345.285 kb on - strand, within MPMX19_05628at 345.285 kb on - strand, within MPMX19_05628at 345.285 kb on - strand, within MPMX19_05628at 345.377 kb on + strand, within MPMX19_05628at 345.377 kb on + strand, within MPMX19_05628at 345.377 kb on + strand, within MPMX19_05628at 345.378 kb on - strand, within MPMX19_05628at 345.378 kb on - strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.575 kb on + strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.576 kb on - strand, within MPMX19_05628at 345.783 kb on - strandat 345.783 kb on - strandat 345.783 kb on - strandat 345.783 kb on - strandat 345.783 kb on - strandat 345.783 kb on - strandat 345.783 kb on - strandat 345.833 kb on + strandat 345.833 kb on + strandat 345.834 kb on - strandat 345.834 kb on - strandat 345.834 kb on - strandat 345.951 kb on + strandat 345.952 kb on - strandat 345.952 kb on - strandat 345.952 kb on - strandat 345.952 kb on - strandat 346.301 kb on - strand, within MPMX19_05629at 346.375 kb on + strand, within MPMX19_05629at 346.376 kb on - strand, within MPMX19_05629at 346.417 kb on + strand, within MPMX19_05629at 346.417 kb on + strand, within MPMX19_05629at 346.429 kb on + strand, within MPMX19_05629at 346.429 kb on + strand, within MPMX19_05629at 346.429 kb on + strand, within MPMX19_05629at 346.430 kb on - strand, within MPMX19_05629at 346.468 kb on + strand, within MPMX19_05629at 346.469 kb on - strand, within MPMX19_05629at 346.606 kb on + strand, within MPMX19_05629at 346.606 kb on + strand, within MPMX19_05629at 346.606 kb on + strand, within MPMX19_05629at 346.606 kb on + strand, within MPMX19_05629at 346.606 kb on + strand, within MPMX19_05629at 346.606 kb on + strand, within MPMX19_05629at 346.606 kb on + strand, within MPMX19_05629at 346.607 kb on - strand, within MPMX19_05629at 346.607 kb on - strand, within MPMX19_05629at 346.607 kb on - strand, within MPMX19_05629at 346.607 kb on - strand, within MPMX19_05629at 346.607 kb on - strand, within MPMX19_05629at 346.607 kb on - strand, within MPMX19_05629at 346.651 kb on + strand, within MPMX19_05629at 346.651 kb on + strand, within MPMX19_05629at 346.651 kb on + strand, within MPMX19_05629at 346.652 kb on - strand, within MPMX19_05629at 346.652 kb on - strand, within MPMX19_05629at 346.652 kb on - strand, within MPMX19_05629at 346.652 kb on - strand, within MPMX19_05629at 346.652 kb on - strand, within MPMX19_05629at 346.652 kb on - strand, within MPMX19_05629at 346.652 kb on - strand, within MPMX19_05629at 346.739 kb on - strand, within MPMX19_05629

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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344,066 + MPMX19_05627 0.47 -1.4
344,066 + MPMX19_05627 0.47 +0.8
344,066 + MPMX19_05627 0.47 -0.5
344,066 + MPMX19_05627 0.47 -0.5
344,066 + MPMX19_05627 0.47 -0.9
344,067 - MPMX19_05627 0.47 +1.0
344,067 - MPMX19_05627 0.47 -0.4
344,067 - MPMX19_05627 0.47 -2.1
344,067 - MPMX19_05627 0.47 +0.3
344,067 - MPMX19_05627 0.47 -0.7
344,067 - MPMX19_05627 0.47 -0.2
344,165 + MPMX19_05627 0.55 -1.7
344,672 + -1.0
344,672 + -2.0
344,672 + -1.4
344,672 + -1.7
344,672 + -1.5
344,672 + -1.1
344,673 - +1.0
344,673 - -2.4
344,673 - -2.0
344,673 - -0.4
344,673 - +0.5
344,729 + -0.7
344,729 + -0.2
344,729 + -1.3
344,729 + +1.3
344,729 + -0.4
344,729 + -2.0
344,762 + +0.1
344,763 - +0.3
344,849 + -0.2
344,849 + -1.3
344,849 + -2.2
344,849 + -0.3
344,849 + -2.7
344,849 + -0.1
344,849 + -0.8
344,849 + -0.3
344,849 + +0.0
344,849 + -1.9
344,849 + -0.3
344,849 + -0.5
344,849 + +0.1
344,850 - +0.5
344,850 - +1.0
344,850 - -0.1
344,850 - -0.5
344,850 - -1.0
344,850 - -0.8
344,850 - -1.1
344,850 - +0.3
344,850 - -1.8
344,850 - -0.3
344,850 - -0.5
344,953 + MPMX19_05628 0.11 -0.9
344,953 + MPMX19_05628 0.11 -0.9
344,953 + MPMX19_05628 0.11 -0.1
345,092 + MPMX19_05628 0.25 -0.8
345,093 - MPMX19_05628 0.25 +0.5
345,206 + MPMX19_05628 0.37 +0.3
345,206 + MPMX19_05628 0.37 +0.5
345,206 + MPMX19_05628 0.37 -0.2
345,206 + MPMX19_05628 0.37 +0.2
345,206 + MPMX19_05628 0.37 -0.1
345,207 - MPMX19_05628 0.37 +0.0
345,278 + MPMX19_05628 0.44 -2.8
345,278 + MPMX19_05628 0.44 +1.0
345,278 + MPMX19_05628 0.44 -0.7
345,284 + MPMX19_05628 0.45 -0.3
345,285 - MPMX19_05628 0.45 -0.4
345,285 - MPMX19_05628 0.45 -0.2
345,285 - MPMX19_05628 0.45 -1.2
345,377 + MPMX19_05628 0.54 -0.2
345,377 + MPMX19_05628 0.54 -0.1
345,377 + MPMX19_05628 0.54 -0.3
345,378 - MPMX19_05628 0.54 -0.3
345,378 - MPMX19_05628 0.54 +0.5
345,575 + MPMX19_05628 0.74 -2.1
345,575 + MPMX19_05628 0.74 -1.8
345,575 + MPMX19_05628 0.74 -1.3
345,575 + MPMX19_05628 0.74 -2.2
345,575 + MPMX19_05628 0.74 -0.5
345,575 + MPMX19_05628 0.74 -0.4
345,575 + MPMX19_05628 0.74 -1.2
345,575 + MPMX19_05628 0.74 -1.3
345,575 + MPMX19_05628 0.74 +0.2
345,575 + MPMX19_05628 0.74 +0.6
345,575 + MPMX19_05628 0.74 +0.2
345,575 + MPMX19_05628 0.74 +2.3
345,575 + MPMX19_05628 0.74 -0.5
345,575 + MPMX19_05628 0.74 -0.7
345,575 + MPMX19_05628 0.74 +0.5
345,575 + MPMX19_05628 0.74 -1.1
345,575 + MPMX19_05628 0.74 +0.6
345,575 + MPMX19_05628 0.74 -0.8
345,575 + MPMX19_05628 0.74 -0.4
345,575 + MPMX19_05628 0.74 -1.3
345,575 + MPMX19_05628 0.74 +1.0
345,575 + MPMX19_05628 0.74 -1.3
345,575 + MPMX19_05628 0.74 -0.6
345,575 + MPMX19_05628 0.74 -0.3
345,575 + MPMX19_05628 0.74 +0.5
345,576 - MPMX19_05628 0.74 -0.7
345,576 - MPMX19_05628 0.74 -0.3
345,576 - MPMX19_05628 0.74 -1.1
345,576 - MPMX19_05628 0.74 +0.0
345,576 - MPMX19_05628 0.74 -0.8
345,576 - MPMX19_05628 0.74 +0.0
345,576 - MPMX19_05628 0.74 -1.7
345,576 - MPMX19_05628 0.74 -1.1
345,576 - MPMX19_05628 0.74 -1.2
345,576 - MPMX19_05628 0.74 +0.9
345,576 - MPMX19_05628 0.74 +1.0
345,576 - MPMX19_05628 0.74 -1.0
345,576 - MPMX19_05628 0.74 +0.0
345,576 - MPMX19_05628 0.74 +1.3
345,576 - MPMX19_05628 0.74 +0.3
345,576 - MPMX19_05628 0.74 -0.8
345,576 - MPMX19_05628 0.74 -0.8
345,576 - MPMX19_05628 0.74 -0.9
345,576 - MPMX19_05628 0.74 -0.2
345,576 - MPMX19_05628 0.74 -0.1
345,576 - MPMX19_05628 0.74 -0.7
345,576 - MPMX19_05628 0.74 -0.6
345,576 - MPMX19_05628 0.74 +0.2
345,576 - MPMX19_05628 0.74 -1.1
345,576 - MPMX19_05628 0.74 -0.9
345,576 - MPMX19_05628 0.74 -0.6
345,576 - MPMX19_05628 0.74 -0.7
345,576 - MPMX19_05628 0.74 +1.5
345,783 - +0.0
345,783 - -0.7
345,783 - +0.0
345,783 - -1.0
345,783 - +0.2
345,783 - -2.0
345,783 - -2.7
345,833 + +0.1
345,833 + -0.5
345,834 - -0.3
345,834 - -0.3
345,834 - -2.1
345,951 + -0.8
345,952 - -0.1
345,952 - -1.1
345,952 - -0.2
345,952 - -0.2
346,301 - MPMX19_05629 0.35 +0.5
346,375 + MPMX19_05629 0.42 -0.7
346,376 - MPMX19_05629 0.42 -0.5
346,417 + MPMX19_05629 0.47 -1.2
346,417 + MPMX19_05629 0.47 +0.5
346,429 + MPMX19_05629 0.48 -0.8
346,429 + MPMX19_05629 0.48 +0.0
346,429 + MPMX19_05629 0.48 +0.5
346,430 - MPMX19_05629 0.48 +0.0
346,468 + MPMX19_05629 0.52 -0.6
346,469 - MPMX19_05629 0.52 +0.7
346,606 + MPMX19_05629 0.66 -0.5
346,606 + MPMX19_05629 0.66 -0.8
346,606 + MPMX19_05629 0.66 -1.9
346,606 + MPMX19_05629 0.66 -0.5
346,606 + MPMX19_05629 0.66 -1.1
346,606 + MPMX19_05629 0.66 -1.0
346,606 + MPMX19_05629 0.66 -0.1
346,607 - MPMX19_05629 0.66 -1.2
346,607 - MPMX19_05629 0.66 +1.0
346,607 - MPMX19_05629 0.66 -1.8
346,607 - MPMX19_05629 0.66 -0.5
346,607 - MPMX19_05629 0.66 +0.5
346,607 - MPMX19_05629 0.66 +0.2
346,651 + MPMX19_05629 0.71 +0.1
346,651 + MPMX19_05629 0.71 -0.3
346,651 + MPMX19_05629 0.71 -0.4
346,652 - MPMX19_05629 0.71 -0.8
346,652 - MPMX19_05629 0.71 -0.5
346,652 - MPMX19_05629 0.71 -0.3
346,652 - MPMX19_05629 0.71 -1.1
346,652 - MPMX19_05629 0.71 +0.3
346,652 - MPMX19_05629 0.71 -0.9
346,652 - MPMX19_05629 0.71 -1.1
346,739 - MPMX19_05629 0.80 +0.6

Or see this region's nucleotide sequence