Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05626 and MPMX19_05627 are separated by 407 nucleotides MPMX19_05627 and MPMX19_05628 are separated by 60 nucleotides
MPMX19_05626: MPMX19_05626 - hypothetical protein, at 341,553 to 343,016
_05626
MPMX19_05627: MPMX19_05627 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 343,424 to 344,779
_05627
MPMX19_05628: MPMX19_05628 - dTDP-4-oxo-6-deoxy-D-allose reductase, at 344,840 to 345,835
_05628
Position (kb) 343
344
345 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 342.432 kb on + strand, within MPMX19_05626 at 342.432 kb on + strand, within MPMX19_05626 at 342.432 kb on + strand, within MPMX19_05626 at 342.433 kb on - strand, within MPMX19_05626 at 342.433 kb on - strand, within MPMX19_05626 at 342.433 kb on - strand, within MPMX19_05626 at 342.525 kb on + strand, within MPMX19_05626 at 342.525 kb on + strand, within MPMX19_05626 at 342.526 kb on - strand, within MPMX19_05626 at 342.526 kb on - strand, within MPMX19_05626 at 342.526 kb on - strand, within MPMX19_05626 at 342.526 kb on - strand, within MPMX19_05626 at 342.580 kb on - strand, within MPMX19_05626 at 342.580 kb on - strand, within MPMX19_05626 at 342.580 kb on - strand, within MPMX19_05626 at 342.580 kb on - strand, within MPMX19_05626 at 342.633 kb on + strand, within MPMX19_05626 at 342.633 kb on + strand, within MPMX19_05626 at 342.633 kb on + strand, within MPMX19_05626 at 342.633 kb on + strand, within MPMX19_05626 at 342.634 kb on - strand, within MPMX19_05626 at 342.634 kb on - strand, within MPMX19_05626 at 342.634 kb on - strand, within MPMX19_05626 at 342.634 kb on - strand, within MPMX19_05626 at 342.634 kb on - strand, within MPMX19_05626 at 342.634 kb on - strand, within MPMX19_05626 at 342.634 kb on - strand, within MPMX19_05626 at 342.634 kb on - strand, within MPMX19_05626 at 342.634 kb on - strand, within MPMX19_05626 at 342.634 kb on - strand, within MPMX19_05626 at 342.634 kb on - strand, within MPMX19_05626 at 342.795 kb on + strand, within MPMX19_05626 at 342.795 kb on + strand, within MPMX19_05626 at 342.795 kb on + strand, within MPMX19_05626 at 342.796 kb on - strand, within MPMX19_05626 at 342.796 kb on - strand, within MPMX19_05626 at 342.796 kb on - strand, within MPMX19_05626 at 342.841 kb on + strand, within MPMX19_05626 at 342.943 kb on - strand at 342.943 kb on - strand at 342.943 kb on - strand at 342.943 kb on - strand at 343.106 kb on + strand at 343.171 kb on - strand at 343.173 kb on + strand at 343.174 kb on - strand at 343.179 kb on + strand at 343.182 kb on + strand at 343.183 kb on - strand at 343.265 kb on + strand at 343.265 kb on + strand at 343.265 kb on + strand at 343.266 kb on - strand at 343.266 kb on - strand at 343.266 kb on - strand at 343.266 kb on - strand at 343.374 kb on + strand at 343.374 kb on + strand at 343.374 kb on + strand at 343.374 kb on + strand at 343.374 kb on + strand at 343.374 kb on + strand at 343.374 kb on + strand at 343.375 kb on - strand at 343.375 kb on - strand at 343.375 kb on - strand at 343.375 kb on - strand at 343.375 kb on - strand at 343.450 kb on + strand at 343.450 kb on + strand at 343.451 kb on - strand at 343.451 kb on - strand at 343.475 kb on + strand at 343.475 kb on + strand at 343.476 kb on - strand at 343.476 kb on - strand at 343.476 kb on - strand at 343.476 kb on - strand at 343.690 kb on + strand, within MPMX19_05627 at 343.690 kb on + strand, within MPMX19_05627 at 343.690 kb on + strand, within MPMX19_05627 at 343.691 kb on - strand, within MPMX19_05627 at 343.691 kb on - strand, within MPMX19_05627 at 344.066 kb on + strand, within MPMX19_05627 at 344.066 kb on + strand, within MPMX19_05627 at 344.066 kb on + strand, within MPMX19_05627 at 344.066 kb on + strand, within MPMX19_05627 at 344.066 kb on + strand, within MPMX19_05627 at 344.067 kb on - strand, within MPMX19_05627 at 344.067 kb on - strand, within MPMX19_05627 at 344.067 kb on - strand, within MPMX19_05627 at 344.067 kb on - strand, within MPMX19_05627 at 344.067 kb on - strand, within MPMX19_05627 at 344.067 kb on - strand, within MPMX19_05627 at 344.165 kb on + strand, within MPMX19_05627 at 344.672 kb on + strand at 344.672 kb on + strand at 344.672 kb on + strand at 344.672 kb on + strand at 344.672 kb on + strand at 344.672 kb on + strand at 344.673 kb on - strand at 344.673 kb on - strand at 344.673 kb on - strand at 344.673 kb on - strand at 344.673 kb on - strand at 344.729 kb on + strand at 344.729 kb on + strand at 344.729 kb on + strand at 344.729 kb on + strand at 344.729 kb on + strand at 344.729 kb on + strand at 344.762 kb on + strand at 344.763 kb on - strand at 344.849 kb on + strand at 344.849 kb on + strand at 344.849 kb on + strand at 344.849 kb on + strand at 344.849 kb on + strand at 344.849 kb on + strand at 344.849 kb on + strand at 344.849 kb on + strand at 344.849 kb on + strand at 344.849 kb on + strand at 344.849 kb on + strand at 344.849 kb on + strand at 344.849 kb on + strand at 344.850 kb on - strand at 344.850 kb on - strand at 344.850 kb on - strand at 344.850 kb on - strand at 344.850 kb on - strand at 344.850 kb on - strand at 344.850 kb on - strand at 344.850 kb on - strand at 344.850 kb on - strand at 344.850 kb on - strand at 344.850 kb on - strand at 344.953 kb on + strand, within MPMX19_05628 at 344.953 kb on + strand, within MPMX19_05628 at 344.953 kb on + strand, within MPMX19_05628 at 345.092 kb on + strand, within MPMX19_05628 at 345.093 kb on - strand, within MPMX19_05628 at 345.206 kb on + strand, within MPMX19_05628 at 345.206 kb on + strand, within MPMX19_05628 at 345.206 kb on + strand, within MPMX19_05628 at 345.206 kb on + strand, within MPMX19_05628 at 345.206 kb on + strand, within MPMX19_05628 at 345.207 kb on - strand, within MPMX19_05628 at 345.278 kb on + strand, within MPMX19_05628 at 345.278 kb on + strand, within MPMX19_05628 at 345.278 kb on + strand, within MPMX19_05628 at 345.284 kb on + strand, within MPMX19_05628 at 345.285 kb on - strand, within MPMX19_05628 at 345.285 kb on - strand, within MPMX19_05628 at 345.285 kb on - strand, within MPMX19_05628 at 345.377 kb on + strand, within MPMX19_05628 at 345.377 kb on + strand, within MPMX19_05628 at 345.377 kb on + strand, within MPMX19_05628 at 345.378 kb on - strand, within MPMX19_05628 at 345.378 kb on - strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.575 kb on + strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628 at 345.576 kb on - strand, within MPMX19_05628
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 342,432 + MPMX19_05626 0.60 -0.2 342,432 + MPMX19_05626 0.60 +2.2 342,432 + MPMX19_05626 0.60 +0.1 342,433 - MPMX19_05626 0.60 -1.9 342,433 - MPMX19_05626 0.60 -1.0 342,433 - MPMX19_05626 0.60 -0.0 342,525 + MPMX19_05626 0.66 -1.7 342,525 + MPMX19_05626 0.66 -2.2 342,526 - MPMX19_05626 0.66 -1.7 342,526 - MPMX19_05626 0.66 -0.1 342,526 - MPMX19_05626 0.66 -0.1 342,526 - MPMX19_05626 0.66 -1.0 342,580 - MPMX19_05626 0.70 -0.3 342,580 - MPMX19_05626 0.70 -0.4 342,580 - MPMX19_05626 0.70 -0.4 342,580 - MPMX19_05626 0.70 +0.1 342,633 + MPMX19_05626 0.74 +0.1 342,633 + MPMX19_05626 0.74 -1.8 342,633 + MPMX19_05626 0.74 -1.0 342,633 + MPMX19_05626 0.74 -0.3 342,634 - MPMX19_05626 0.74 -1.3 342,634 - MPMX19_05626 0.74 -0.5 342,634 - MPMX19_05626 0.74 -0.4 342,634 - MPMX19_05626 0.74 -0.4 342,634 - MPMX19_05626 0.74 -0.8 342,634 - MPMX19_05626 0.74 -0.8 342,634 - MPMX19_05626 0.74 -0.5 342,634 - MPMX19_05626 0.74 -0.8 342,634 - MPMX19_05626 0.74 -0.3 342,634 - MPMX19_05626 0.74 +0.1 342,634 - MPMX19_05626 0.74 -2.0 342,795 + MPMX19_05626 0.85 +0.2 342,795 + MPMX19_05626 0.85 -1.9 342,795 + MPMX19_05626 0.85 +0.3 342,796 - MPMX19_05626 0.85 +0.2 342,796 - MPMX19_05626 0.85 -0.9 342,796 - MPMX19_05626 0.85 +0.3 342,841 + MPMX19_05626 0.88 +1.6 342,943 - -1.3 342,943 - -2.0 342,943 - -1.2 342,943 - -1.8 343,106 + -1.4 343,171 - -0.3 343,173 + -1.8 343,174 - -2.3 343,179 + -0.4 343,182 + -0.8 343,183 - +1.5 343,265 + -2.1 343,265 + +0.2 343,265 + +1.2 343,266 - -0.1 343,266 - +0.7 343,266 - -1.5 343,266 - +0.0 343,374 + -1.7 343,374 + +0.2 343,374 + -0.3 343,374 + -1.5 343,374 + -0.1 343,374 + -1.0 343,374 + +2.0 343,375 - +0.7 343,375 - -0.1 343,375 - +1.1 343,375 - +0.8 343,375 - -2.5 343,450 + -0.3 343,450 + -0.4 343,451 - +0.3 343,451 - -1.7 343,475 + -1.9 343,475 + +0.1 343,476 - -1.0 343,476 - -1.4 343,476 - +0.3 343,476 - -1.4 343,690 + MPMX19_05627 0.20 -0.3 343,690 + MPMX19_05627 0.20 -1.4 343,690 + MPMX19_05627 0.20 -0.2 343,691 - MPMX19_05627 0.20 -0.3 343,691 - MPMX19_05627 0.20 +0.8 344,066 + MPMX19_05627 0.47 -1.4 344,066 + MPMX19_05627 0.47 +0.8 344,066 + MPMX19_05627 0.47 -0.5 344,066 + MPMX19_05627 0.47 -0.5 344,066 + MPMX19_05627 0.47 -0.9 344,067 - MPMX19_05627 0.47 +1.0 344,067 - MPMX19_05627 0.47 -0.4 344,067 - MPMX19_05627 0.47 -2.1 344,067 - MPMX19_05627 0.47 +0.3 344,067 - MPMX19_05627 0.47 -0.7 344,067 - MPMX19_05627 0.47 -0.2 344,165 + MPMX19_05627 0.55 -1.7 344,672 + -1.0 344,672 + -2.0 344,672 + -1.4 344,672 + -1.7 344,672 + -1.5 344,672 + -1.1 344,673 - +1.0 344,673 - -2.4 344,673 - -2.0 344,673 - -0.4 344,673 - +0.5 344,729 + -0.7 344,729 + -0.2 344,729 + -1.3 344,729 + +1.3 344,729 + -0.4 344,729 + -2.0 344,762 + +0.1 344,763 - +0.3 344,849 + -0.2 344,849 + -1.3 344,849 + -2.2 344,849 + -0.3 344,849 + -2.7 344,849 + -0.1 344,849 + -0.8 344,849 + -0.3 344,849 + +0.0 344,849 + -1.9 344,849 + -0.3 344,849 + -0.5 344,849 + +0.1 344,850 - +0.5 344,850 - +1.0 344,850 - -0.1 344,850 - -0.5 344,850 - -1.0 344,850 - -0.8 344,850 - -1.1 344,850 - +0.3 344,850 - -1.8 344,850 - -0.3 344,850 - -0.5 344,953 + MPMX19_05628 0.11 -0.9 344,953 + MPMX19_05628 0.11 -0.9 344,953 + MPMX19_05628 0.11 -0.1 345,092 + MPMX19_05628 0.25 -0.8 345,093 - MPMX19_05628 0.25 +0.5 345,206 + MPMX19_05628 0.37 +0.3 345,206 + MPMX19_05628 0.37 +0.5 345,206 + MPMX19_05628 0.37 -0.2 345,206 + MPMX19_05628 0.37 +0.2 345,206 + MPMX19_05628 0.37 -0.1 345,207 - MPMX19_05628 0.37 +0.0 345,278 + MPMX19_05628 0.44 -2.8 345,278 + MPMX19_05628 0.44 +1.0 345,278 + MPMX19_05628 0.44 -0.7 345,284 + MPMX19_05628 0.45 -0.3 345,285 - MPMX19_05628 0.45 -0.4 345,285 - MPMX19_05628 0.45 -0.2 345,285 - MPMX19_05628 0.45 -1.2 345,377 + MPMX19_05628 0.54 -0.2 345,377 + MPMX19_05628 0.54 -0.1 345,377 + MPMX19_05628 0.54 -0.3 345,378 - MPMX19_05628 0.54 -0.3 345,378 - MPMX19_05628 0.54 +0.5 345,575 + MPMX19_05628 0.74 -2.1 345,575 + MPMX19_05628 0.74 -1.8 345,575 + MPMX19_05628 0.74 -1.3 345,575 + MPMX19_05628 0.74 -2.2 345,575 + MPMX19_05628 0.74 -0.5 345,575 + MPMX19_05628 0.74 -0.4 345,575 + MPMX19_05628 0.74 -1.2 345,575 + MPMX19_05628 0.74 -1.3 345,575 + MPMX19_05628 0.74 +0.2 345,575 + MPMX19_05628 0.74 +0.6 345,575 + MPMX19_05628 0.74 +0.2 345,575 + MPMX19_05628 0.74 +2.3 345,575 + MPMX19_05628 0.74 -0.5 345,575 + MPMX19_05628 0.74 -0.7 345,575 + MPMX19_05628 0.74 +0.5 345,575 + MPMX19_05628 0.74 -1.1 345,575 + MPMX19_05628 0.74 +0.6 345,575 + MPMX19_05628 0.74 -0.8 345,575 + MPMX19_05628 0.74 -0.4 345,575 + MPMX19_05628 0.74 -1.3 345,575 + MPMX19_05628 0.74 +1.0 345,575 + MPMX19_05628 0.74 -1.3 345,575 + MPMX19_05628 0.74 -0.6 345,575 + MPMX19_05628 0.74 -0.3 345,575 + MPMX19_05628 0.74 +0.5 345,576 - MPMX19_05628 0.74 -0.7 345,576 - MPMX19_05628 0.74 -0.3 345,576 - MPMX19_05628 0.74 -1.1 345,576 - MPMX19_05628 0.74 +0.0 345,576 - MPMX19_05628 0.74 -0.8 345,576 - MPMX19_05628 0.74 +0.0 345,576 - MPMX19_05628 0.74 -1.7 345,576 - MPMX19_05628 0.74 -1.1 345,576 - MPMX19_05628 0.74 -1.2 345,576 - MPMX19_05628 0.74 +0.9 345,576 - MPMX19_05628 0.74 +1.0 345,576 - MPMX19_05628 0.74 -1.0 345,576 - MPMX19_05628 0.74 +0.0 345,576 - MPMX19_05628 0.74 +1.3 345,576 - MPMX19_05628 0.74 +0.3 345,576 - MPMX19_05628 0.74 -0.8 345,576 - MPMX19_05628 0.74 -0.8 345,576 - MPMX19_05628 0.74 -0.9 345,576 - MPMX19_05628 0.74 -0.2 345,576 - MPMX19_05628 0.74 -0.1 345,576 - MPMX19_05628 0.74 -0.7 345,576 - MPMX19_05628 0.74 -0.6 345,576 - MPMX19_05628 0.74 +0.2 345,576 - MPMX19_05628 0.74 -1.1 345,576 - MPMX19_05628 0.74 -0.9 345,576 - MPMX19_05628 0.74 -0.6 345,576 - MPMX19_05628 0.74 -0.7 345,576 - MPMX19_05628 0.74 +1.5
Or see this region's nucleotide sequence