Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05622 and MPMX19_05623 are separated by 9 nucleotides MPMX19_05623 and MPMX19_05624 are separated by 237 nucleotides MPMX19_05624 and MPMX19_05625 are separated by 719 nucleotides
MPMX19_05622: MPMX19_05622 - Sensor histidine kinase RegB, at 336,142 to 337,536
_05622
MPMX19_05623: MPMX19_05623 - Photosynthetic apparatus regulatory protein RegA, at 337,546 to 338,142
_05623
MPMX19_05624: MPMX19_05624 - hypothetical protein, at 338,380 to 338,541
_05624
MPMX19_05625: MPMX19_05625 - hypothetical protein, at 339,261 to 341,465
_05625
Position (kb) 338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 337.912 kb on + strand, within MPMX19_05623 at 337.912 kb on + strand, within MPMX19_05623 at 337.913 kb on - strand, within MPMX19_05623 at 337.913 kb on - strand, within MPMX19_05623 at 337.913 kb on - strand, within MPMX19_05623 at 337.913 kb on - strand, within MPMX19_05623 at 337.913 kb on - strand, within MPMX19_05623 at 337.943 kb on + strand, within MPMX19_05623 at 337.943 kb on + strand, within MPMX19_05623 at 337.943 kb on + strand, within MPMX19_05623 at 337.944 kb on - strand, within MPMX19_05623 at 337.944 kb on - strand, within MPMX19_05623 at 337.944 kb on - strand, within MPMX19_05623 at 337.944 kb on - strand, within MPMX19_05623 at 338.469 kb on + strand, within MPMX19_05624 at 338.469 kb on + strand, within MPMX19_05624 at 338.469 kb on + strand, within MPMX19_05624 at 338.469 kb on + strand, within MPMX19_05624 at 338.599 kb on - strand at 338.738 kb on + strand at 338.738 kb on + strand at 338.739 kb on - strand at 338.944 kb on + strand at 338.945 kb on - strand at 338.945 kb on - strand at 338.971 kb on + strand at 338.971 kb on + strand at 338.971 kb on + strand at 338.972 kb on - strand at 338.972 kb on - strand at 338.972 kb on - strand at 339.000 kb on - strand at 339.058 kb on + strand at 339.058 kb on + strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.153 kb on + strand at 339.153 kb on + strand at 339.153 kb on + strand at 339.153 kb on + strand at 339.154 kb on - strand at 339.154 kb on - strand at 339.154 kb on - strand at 339.154 kb on - strand at 339.154 kb on - strand at 339.154 kb on - strand at 339.154 kb on - strand at 339.279 kb on + strand at 339.279 kb on + strand at 339.279 kb on + strand at 339.280 kb on - strand at 339.280 kb on - strand at 339.280 kb on - strand at 339.280 kb on - strand at 339.280 kb on - strand at 339.417 kb on + strand at 339.417 kb on + strand at 339.417 kb on + strand at 339.417 kb on + strand at 339.417 kb on + strand at 339.417 kb on + strand at 339.417 kb on + strand at 339.417 kb on + strand at 339.418 kb on - strand at 339.418 kb on - strand at 339.418 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 337,912 + MPMX19_05623 0.61 -0.5 337,912 + MPMX19_05623 0.61 -2.0 337,913 - MPMX19_05623 0.61 +0.0 337,913 - MPMX19_05623 0.61 -0.5 337,913 - MPMX19_05623 0.61 -0.1 337,913 - MPMX19_05623 0.61 +0.1 337,913 - MPMX19_05623 0.61 -0.8 337,943 + MPMX19_05623 0.66 -0.5 337,943 + MPMX19_05623 0.66 -2.4 337,943 + MPMX19_05623 0.66 -0.8 337,944 - MPMX19_05623 0.67 -1.3 337,944 - MPMX19_05623 0.67 -0.9 337,944 - MPMX19_05623 0.67 -0.5 337,944 - MPMX19_05623 0.67 -1.3 338,469 + MPMX19_05624 0.55 -0.5 338,469 + MPMX19_05624 0.55 -0.5 338,469 + MPMX19_05624 0.55 -1.0 338,469 + MPMX19_05624 0.55 -2.9 338,599 - -0.1 338,738 + +1.6 338,738 + -0.5 338,739 - +0.1 338,944 + -0.8 338,945 - -1.1 338,945 - -1.9 338,971 + -0.7 338,971 + -1.4 338,971 + -0.8 338,972 - -1.7 338,972 - +0.2 338,972 - -1.3 339,000 - -0.4 339,058 + +0.0 339,058 + +1.2 339,059 - -1.5 339,059 - -1.0 339,059 - -0.1 339,059 - -1.5 339,059 - +0.5 339,059 - +0.5 339,059 - -1.7 339,059 - +0.0 339,059 - -1.3 339,059 - +0.8 339,059 - -0.4 339,153 + -1.3 339,153 + -1.2 339,153 + -1.1 339,153 + -1.1 339,154 - -0.5 339,154 - +0.5 339,154 - +1.3 339,154 - -0.5 339,154 - -1.1 339,154 - -1.1 339,154 - -1.3 339,279 + -1.9 339,279 + -0.1 339,279 + -0.5 339,280 - -1.5 339,280 - -0.3 339,280 - -1.0 339,280 - -0.8 339,280 - -0.3 339,417 + -0.5 339,417 + +0.2 339,417 + -0.8 339,417 + -1.1 339,417 + +0.5 339,417 + -0.9 339,417 + -0.3 339,417 + -0.8 339,418 - -2.0 339,418 - -0.3 339,418 - +0.4
Or see this region's nucleotide sequence