Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05619 and MPMX19_05620 are separated by 49 nucleotides MPMX19_05620 and MPMX19_05621 overlap by 14 nucleotides MPMX19_05621 and MPMX19_05622 are separated by 63 nucleotides
MPMX19_05619: MPMX19_05619 - Aminopyrimidine aminohydrolase, at 333,689 to 334,375
_05619
MPMX19_05620: MPMX19_05620 - hypothetical protein, at 334,425 to 335,264
_05620
MPMX19_05621: MPMX19_05621 - ABC transporter ATP-binding protein NatA, at 335,251 to 336,078
_05621
MPMX19_05622: MPMX19_05622 - Sensor histidine kinase RegB, at 336,142 to 337,536
_05622
Position (kb) 335
336
337 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 334.302 kb on + strand, within MPMX19_05619 at 334.302 kb on + strand, within MPMX19_05619 at 334.302 kb on + strand, within MPMX19_05619 at 334.302 kb on + strand, within MPMX19_05619 at 334.302 kb on + strand, within MPMX19_05619 at 334.302 kb on + strand, within MPMX19_05619 at 334.302 kb on + strand, within MPMX19_05619 at 334.302 kb on + strand, within MPMX19_05619 at 334.302 kb on + strand, within MPMX19_05619 at 334.302 kb on + strand, within MPMX19_05619 at 334.302 kb on + strand, within MPMX19_05619 at 334.303 kb on - strand, within MPMX19_05619 at 334.303 kb on - strand, within MPMX19_05619 at 334.303 kb on - strand, within MPMX19_05619 at 334.303 kb on - strand, within MPMX19_05619 at 334.303 kb on - strand, within MPMX19_05619 at 334.419 kb on + strand at 334.420 kb on - strand at 334.420 kb on - strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.478 kb on - strand at 334.478 kb on - strand at 334.478 kb on - strand at 334.478 kb on - strand at 334.478 kb on - strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.654 kb on + strand, within MPMX19_05620 at 334.654 kb on + strand, within MPMX19_05620 at 334.655 kb on - strand, within MPMX19_05620 at 334.655 kb on - strand, within MPMX19_05620 at 334.657 kb on + strand, within MPMX19_05620 at 334.657 kb on + strand, within MPMX19_05620 at 334.657 kb on + strand, within MPMX19_05620 at 334.657 kb on + strand, within MPMX19_05620 at 334.657 kb on + strand, within MPMX19_05620 at 334.657 kb on + strand, within MPMX19_05620 at 334.657 kb on + strand, within MPMX19_05620 at 334.657 kb on + strand, within MPMX19_05620 at 334.658 kb on - strand, within MPMX19_05620 at 334.658 kb on - strand, within MPMX19_05620 at 334.658 kb on - strand, within MPMX19_05620 at 334.658 kb on - strand, within MPMX19_05620 at 334.658 kb on - strand, within MPMX19_05620 at 334.658 kb on - strand, within MPMX19_05620 at 334.658 kb on - strand, within MPMX19_05620 at 334.658 kb on - strand, within MPMX19_05620 at 334.658 kb on - strand, within MPMX19_05620 at 334.658 kb on - strand, within MPMX19_05620 at 334.724 kb on - strand, within MPMX19_05620 at 334.724 kb on - strand, within MPMX19_05620 at 334.825 kb on + strand, within MPMX19_05620 at 335.110 kb on + strand, within MPMX19_05620 at 335.110 kb on + strand, within MPMX19_05620 at 335.111 kb on - strand, within MPMX19_05620 at 335.111 kb on - strand, within MPMX19_05620 at 335.111 kb on - strand, within MPMX19_05620 at 335.111 kb on - strand, within MPMX19_05620 at 335.111 kb on - strand, within MPMX19_05620 at 335.143 kb on + strand, within MPMX19_05620 at 335.143 kb on + strand, within MPMX19_05620 at 335.143 kb on + strand, within MPMX19_05620 at 335.143 kb on + strand, within MPMX19_05620 at 335.143 kb on + strand, within MPMX19_05620 at 335.144 kb on - strand, within MPMX19_05620 at 335.144 kb on - strand, within MPMX19_05620 at 335.144 kb on - strand, within MPMX19_05620 at 335.144 kb on - strand, within MPMX19_05620 at 335.185 kb on + strand at 335.185 kb on + strand at 335.185 kb on + strand at 335.185 kb on + strand at 335.185 kb on + strand at 335.185 kb on + strand at 335.185 kb on + strand at 335.185 kb on + strand at 335.185 kb on + strand at 335.186 kb on - strand at 335.186 kb on - strand at 335.186 kb on - strand at 335.186 kb on - strand at 335.186 kb on - strand at 335.186 kb on - strand at 335.186 kb on - strand at 335.186 kb on - strand at 335.186 kb on - strand at 335.186 kb on - strand at 335.186 kb on - strand at 335.191 kb on + strand at 335.192 kb on - strand at 335.495 kb on + strand, within MPMX19_05621 at 335.495 kb on + strand, within MPMX19_05621 at 335.495 kb on + strand, within MPMX19_05621 at 335.495 kb on + strand, within MPMX19_05621 at 335.495 kb on + strand, within MPMX19_05621 at 335.495 kb on + strand, within MPMX19_05621 at 335.496 kb on - strand, within MPMX19_05621 at 335.496 kb on - strand, within MPMX19_05621 at 335.496 kb on - strand, within MPMX19_05621 at 335.496 kb on - strand, within MPMX19_05621 at 335.496 kb on - strand, within MPMX19_05621 at 335.496 kb on - strand, within MPMX19_05621 at 335.496 kb on - strand, within MPMX19_05621 at 335.496 kb on - strand, within MPMX19_05621 at 335.706 kb on - strand, within MPMX19_05621 at 335.717 kb on + strand, within MPMX19_05621 at 335.717 kb on + strand, within MPMX19_05621 at 335.717 kb on + strand, within MPMX19_05621 at 335.717 kb on + strand, within MPMX19_05621 at 335.717 kb on + strand, within MPMX19_05621 at 335.718 kb on - strand, within MPMX19_05621 at 335.718 kb on - strand, within MPMX19_05621 at 335.718 kb on - strand, within MPMX19_05621 at 335.718 kb on - strand, within MPMX19_05621 at 335.718 kb on - strand, within MPMX19_05621 at 335.718 kb on - strand, within MPMX19_05621 at 335.718 kb on - strand, within MPMX19_05621 at 335.724 kb on + strand, within MPMX19_05621 at 335.725 kb on - strand, within MPMX19_05621 at 335.725 kb on - strand, within MPMX19_05621 at 335.765 kb on + strand, within MPMX19_05621 at 335.765 kb on + strand, within MPMX19_05621 at 335.765 kb on + strand, within MPMX19_05621 at 335.765 kb on + strand, within MPMX19_05621 at 335.765 kb on + strand, within MPMX19_05621 at 335.766 kb on - strand, within MPMX19_05621 at 335.766 kb on - strand, within MPMX19_05621 at 335.766 kb on - strand, within MPMX19_05621 at 335.766 kb on - strand, within MPMX19_05621 at 336.089 kb on + strand at 336.089 kb on + strand at 336.089 kb on + strand at 336.089 kb on + strand at 336.089 kb on + strand at 336.089 kb on + strand at 336.090 kb on - strand at 336.090 kb on - strand at 336.090 kb on - strand at 336.090 kb on - strand at 336.090 kb on - strand at 336.090 kb on - strand at 336.090 kb on - strand at 336.090 kb on - strand at 336.427 kb on + strand, within MPMX19_05622 at 336.427 kb on + strand, within MPMX19_05622 at 336.427 kb on + strand, within MPMX19_05622 at 336.427 kb on + strand, within MPMX19_05622 at 336.427 kb on + strand, within MPMX19_05622 at 336.428 kb on - strand, within MPMX19_05622 at 336.428 kb on - strand, within MPMX19_05622 at 336.428 kb on - strand, within MPMX19_05622 at 336.428 kb on - strand, within MPMX19_05622 at 336.428 kb on - strand, within MPMX19_05622 at 336.428 kb on - strand, within MPMX19_05622 at 336.428 kb on - strand, within MPMX19_05622 at 336.428 kb on - strand, within MPMX19_05622 at 336.428 kb on - strand, within MPMX19_05622 at 336.428 kb on - strand, within MPMX19_05622 at 336.436 kb on + strand, within MPMX19_05622 at 336.436 kb on + strand, within MPMX19_05622 at 336.436 kb on + strand, within MPMX19_05622 at 336.436 kb on + strand, within MPMX19_05622 at 336.436 kb on + strand, within MPMX19_05622 at 336.436 kb on + strand, within MPMX19_05622 at 336.436 kb on + strand, within MPMX19_05622 at 336.437 kb on - strand, within MPMX19_05622 at 336.437 kb on - strand, within MPMX19_05622 at 336.437 kb on - strand, within MPMX19_05622 at 336.437 kb on - strand, within MPMX19_05622 at 336.437 kb on - strand, within MPMX19_05622 at 336.437 kb on - strand, within MPMX19_05622 at 336.437 kb on - strand, within MPMX19_05622 at 336.437 kb on - strand, within MPMX19_05622 at 336.437 kb on - strand, within MPMX19_05622 at 336.437 kb on - strand, within MPMX19_05622 at 336.439 kb on - strand, within MPMX19_05622 at 336.466 kb on + strand, within MPMX19_05622 at 336.466 kb on + strand, within MPMX19_05622 at 336.466 kb on + strand, within MPMX19_05622 at 336.466 kb on + strand, within MPMX19_05622 at 336.467 kb on - strand, within MPMX19_05622 at 336.467 kb on - strand, within MPMX19_05622 at 336.467 kb on - strand, within MPMX19_05622 at 336.467 kb on - strand, within MPMX19_05622 at 336.467 kb on - strand, within MPMX19_05622 at 336.547 kb on + strand, within MPMX19_05622 at 336.548 kb on - strand, within MPMX19_05622 at 336.655 kb on + strand, within MPMX19_05622 at 336.655 kb on + strand, within MPMX19_05622 at 336.655 kb on + strand, within MPMX19_05622 at 336.655 kb on + strand, within MPMX19_05622 at 336.655 kb on + strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.709 kb on + strand, within MPMX19_05622 at 336.709 kb on + strand, within MPMX19_05622 at 336.709 kb on + strand, within MPMX19_05622 at 336.709 kb on + strand, within MPMX19_05622 at 336.709 kb on + strand, within MPMX19_05622 at 336.710 kb on - strand, within MPMX19_05622 at 336.710 kb on - strand, within MPMX19_05622 at 336.710 kb on - strand, within MPMX19_05622 at 336.710 kb on - strand, within MPMX19_05622 at 336.908 kb on - strand, within MPMX19_05622 at 336.908 kb on - strand, within MPMX19_05622 at 336.908 kb on - strand, within MPMX19_05622 at 336.908 kb on - strand, within MPMX19_05622 at 336.908 kb on - strand, within MPMX19_05622
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 334,302 + MPMX19_05619 0.89 +0.0 334,302 + MPMX19_05619 0.89 -1.0 334,302 + MPMX19_05619 0.89 +0.1 334,302 + MPMX19_05619 0.89 -0.5 334,302 + MPMX19_05619 0.89 -1.3 334,302 + MPMX19_05619 0.89 +0.7 334,302 + MPMX19_05619 0.89 +0.8 334,302 + MPMX19_05619 0.89 +0.7 334,302 + MPMX19_05619 0.89 +1.0 334,302 + MPMX19_05619 0.89 -0.1 334,302 + MPMX19_05619 0.89 -1.0 334,303 - MPMX19_05619 0.89 +0.2 334,303 - MPMX19_05619 0.89 -1.3 334,303 - MPMX19_05619 0.89 -0.7 334,303 - MPMX19_05619 0.89 -1.1 334,303 - MPMX19_05619 0.89 +0.0 334,419 + -1.0 334,420 - -1.0 334,420 - -0.3 334,477 + -0.5 334,477 + -0.9 334,477 + -0.7 334,477 + +0.0 334,477 + +2.0 334,477 + -2.0 334,477 + +0.5 334,477 + +2.0 334,477 + -0.5 334,477 + +0.0 334,477 + -1.7 334,477 + -0.8 334,477 + -1.0 334,478 - +0.0 334,478 - -2.4 334,478 - -1.0 334,478 - -0.1 334,478 - +0.0 334,507 + -1.5 334,507 + -0.5 334,507 + -0.9 334,507 + +0.3 334,507 + +0.5 334,507 + -0.4 334,507 + +0.7 334,507 + -0.9 334,507 + -1.7 334,507 + -1.3 334,507 + -0.1 334,507 + +0.5 334,507 + -0.3 334,507 + +0.0 334,507 + -0.9 334,508 - -1.1 334,508 - -0.4 334,508 - +0.2 334,508 - -0.9 334,508 - -2.0 334,508 - +0.6 334,508 - -1.4 334,508 - -0.4 334,508 - -1.3 334,508 - -1.7 334,508 - +0.2 334,508 - -0.1 334,508 - -0.2 334,508 - -2.6 334,508 - -2.1 334,508 - -0.5 334,508 - +0.7 334,508 - -1.0 334,508 - -1.7 334,508 - -1.2 334,654 + MPMX19_05620 0.27 +0.2 334,654 + MPMX19_05620 0.27 +0.2 334,655 - MPMX19_05620 0.27 -1.7 334,655 - MPMX19_05620 0.27 +1.0 334,657 + MPMX19_05620 0.28 -0.8 334,657 + MPMX19_05620 0.28 -0.2 334,657 + MPMX19_05620 0.28 -0.8 334,657 + MPMX19_05620 0.28 -1.1 334,657 + MPMX19_05620 0.28 -0.5 334,657 + MPMX19_05620 0.28 +1.0 334,657 + MPMX19_05620 0.28 +0.3 334,657 + MPMX19_05620 0.28 -1.0 334,658 - MPMX19_05620 0.28 +0.9 334,658 - MPMX19_05620 0.28 -1.3 334,658 - MPMX19_05620 0.28 -0.4 334,658 - MPMX19_05620 0.28 +0.6 334,658 - MPMX19_05620 0.28 -1.5 334,658 - MPMX19_05620 0.28 -0.5 334,658 - MPMX19_05620 0.28 -0.9 334,658 - MPMX19_05620 0.28 -0.8 334,658 - MPMX19_05620 0.28 +0.4 334,658 - MPMX19_05620 0.28 -1.7 334,724 - MPMX19_05620 0.36 -0.8 334,724 - MPMX19_05620 0.36 -1.4 334,825 + MPMX19_05620 0.48 -1.3 335,110 + MPMX19_05620 0.82 -1.5 335,110 + MPMX19_05620 0.82 -1.5 335,111 - MPMX19_05620 0.82 -0.0 335,111 - MPMX19_05620 0.82 -0.7 335,111 - MPMX19_05620 0.82 -1.0 335,111 - MPMX19_05620 0.82 -0.6 335,111 - MPMX19_05620 0.82 -1.0 335,143 + MPMX19_05620 0.85 -1.2 335,143 + MPMX19_05620 0.85 +0.0 335,143 + MPMX19_05620 0.85 -2.1 335,143 + MPMX19_05620 0.85 -0.1 335,143 + MPMX19_05620 0.85 -1.8 335,144 - MPMX19_05620 0.86 -0.1 335,144 - MPMX19_05620 0.86 -0.5 335,144 - MPMX19_05620 0.86 -0.8 335,144 - MPMX19_05620 0.86 +0.4 335,185 + -0.5 335,185 + +0.5 335,185 + -0.3 335,185 + -1.4 335,185 + -0.7 335,185 + -0.7 335,185 + +0.2 335,185 + -0.8 335,185 + -0.0 335,186 - -0.9 335,186 - -1.7 335,186 - -0.3 335,186 - -0.4 335,186 - +0.0 335,186 - -2.2 335,186 - -0.2 335,186 - -1.1 335,186 - +0.2 335,186 - -0.1 335,186 - -1.0 335,191 + -1.9 335,192 - -0.7 335,495 + MPMX19_05621 0.29 -0.2 335,495 + MPMX19_05621 0.29 +0.1 335,495 + MPMX19_05621 0.29 +0.2 335,495 + MPMX19_05621 0.29 -2.0 335,495 + MPMX19_05621 0.29 +0.2 335,495 + MPMX19_05621 0.29 +0.7 335,496 - MPMX19_05621 0.30 -0.4 335,496 - MPMX19_05621 0.30 -0.5 335,496 - MPMX19_05621 0.30 +1.2 335,496 - MPMX19_05621 0.30 +0.0 335,496 - MPMX19_05621 0.30 -2.1 335,496 - MPMX19_05621 0.30 +0.2 335,496 - MPMX19_05621 0.30 +2.0 335,496 - MPMX19_05621 0.30 -0.7 335,706 - MPMX19_05621 0.55 +0.6 335,717 + MPMX19_05621 0.56 -1.7 335,717 + MPMX19_05621 0.56 -0.3 335,717 + MPMX19_05621 0.56 +0.3 335,717 + MPMX19_05621 0.56 +0.5 335,717 + MPMX19_05621 0.56 -0.8 335,718 - MPMX19_05621 0.56 -0.3 335,718 - MPMX19_05621 0.56 -0.3 335,718 - MPMX19_05621 0.56 +0.3 335,718 - MPMX19_05621 0.56 +2.0 335,718 - MPMX19_05621 0.56 -0.8 335,718 - MPMX19_05621 0.56 +0.5 335,718 - MPMX19_05621 0.56 -1.4 335,724 + MPMX19_05621 0.57 -0.5 335,725 - MPMX19_05621 0.57 +0.7 335,725 - MPMX19_05621 0.57 +1.6 335,765 + MPMX19_05621 0.62 -0.1 335,765 + MPMX19_05621 0.62 +1.0 335,765 + MPMX19_05621 0.62 -0.7 335,765 + MPMX19_05621 0.62 -0.4 335,765 + MPMX19_05621 0.62 -2.0 335,766 - MPMX19_05621 0.62 +0.6 335,766 - MPMX19_05621 0.62 +0.7 335,766 - MPMX19_05621 0.62 -0.8 335,766 - MPMX19_05621 0.62 -0.8 336,089 + -2.4 336,089 + +0.4 336,089 + +0.0 336,089 + -0.1 336,089 + +0.0 336,089 + -0.9 336,090 - +0.4 336,090 - +0.8 336,090 - -0.5 336,090 - -0.3 336,090 - -1.5 336,090 - -0.3 336,090 - -1.7 336,090 - +1.6 336,427 + MPMX19_05622 0.20 -0.8 336,427 + MPMX19_05622 0.20 +0.5 336,427 + MPMX19_05622 0.20 +1.5 336,427 + MPMX19_05622 0.20 +0.6 336,427 + MPMX19_05622 0.20 +2.0 336,428 - MPMX19_05622 0.21 -0.5 336,428 - MPMX19_05622 0.21 +1.7 336,428 - MPMX19_05622 0.21 -0.6 336,428 - MPMX19_05622 0.21 -0.9 336,428 - MPMX19_05622 0.21 +0.1 336,428 - MPMX19_05622 0.21 -0.8 336,428 - MPMX19_05622 0.21 -0.1 336,428 - MPMX19_05622 0.21 -0.1 336,428 - MPMX19_05622 0.21 -0.2 336,428 - MPMX19_05622 0.21 -1.5 336,436 + MPMX19_05622 0.21 -0.3 336,436 + MPMX19_05622 0.21 -0.9 336,436 + MPMX19_05622 0.21 +0.5 336,436 + MPMX19_05622 0.21 +2.0 336,436 + MPMX19_05622 0.21 -1.0 336,436 + MPMX19_05622 0.21 +0.2 336,436 + MPMX19_05622 0.21 +0.0 336,437 - MPMX19_05622 0.21 -1.4 336,437 - MPMX19_05622 0.21 -0.4 336,437 - MPMX19_05622 0.21 -0.6 336,437 - MPMX19_05622 0.21 -1.3 336,437 - MPMX19_05622 0.21 -1.0 336,437 - MPMX19_05622 0.21 +1.6 336,437 - MPMX19_05622 0.21 -0.4 336,437 - MPMX19_05622 0.21 +0.5 336,437 - MPMX19_05622 0.21 -1.0 336,437 - MPMX19_05622 0.21 -1.5 336,439 - MPMX19_05622 0.21 -0.7 336,466 + MPMX19_05622 0.23 -0.5 336,466 + MPMX19_05622 0.23 +0.6 336,466 + MPMX19_05622 0.23 +0.3 336,466 + MPMX19_05622 0.23 -0.3 336,467 - MPMX19_05622 0.23 -0.8 336,467 - MPMX19_05622 0.23 +0.0 336,467 - MPMX19_05622 0.23 +0.5 336,467 - MPMX19_05622 0.23 +1.5 336,467 - MPMX19_05622 0.23 +0.3 336,547 + MPMX19_05622 0.29 -0.9 336,548 - MPMX19_05622 0.29 -1.0 336,655 + MPMX19_05622 0.37 -0.8 336,655 + MPMX19_05622 0.37 -0.5 336,655 + MPMX19_05622 0.37 -1.7 336,655 + MPMX19_05622 0.37 +0.0 336,655 + MPMX19_05622 0.37 -1.0 336,656 - MPMX19_05622 0.37 -0.8 336,656 - MPMX19_05622 0.37 -0.2 336,656 - MPMX19_05622 0.37 -0.1 336,656 - MPMX19_05622 0.37 -0.1 336,656 - MPMX19_05622 0.37 -0.9 336,656 - MPMX19_05622 0.37 -0.2 336,656 - MPMX19_05622 0.37 -1.0 336,709 + MPMX19_05622 0.41 -0.5 336,709 + MPMX19_05622 0.41 -0.5 336,709 + MPMX19_05622 0.41 -0.7 336,709 + MPMX19_05622 0.41 -1.4 336,709 + MPMX19_05622 0.41 -0.1 336,710 - MPMX19_05622 0.41 -2.8 336,710 - MPMX19_05622 0.41 +0.0 336,710 - MPMX19_05622 0.41 +0.2 336,710 - MPMX19_05622 0.41 -1.4 336,908 - MPMX19_05622 0.55 +0.5 336,908 - MPMX19_05622 0.55 -1.4 336,908 - MPMX19_05622 0.55 +0.2 336,908 - MPMX19_05622 0.55 -0.5 336,908 - MPMX19_05622 0.55 -1.3
Or see this region's nucleotide sequence