Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05593

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05592 and MPMX19_05593 are separated by 69 nucleotidesMPMX19_05593 and MPMX19_05594 are separated by 20 nucleotides MPMX19_05592: MPMX19_05592 - Glycine cleavage system transcriptional activator, at 302,988 to 303,872 _05592 MPMX19_05593: MPMX19_05593 - Pyrrolidone-carboxylate peptidase, at 303,942 to 304,589 _05593 MPMX19_05594: MPMX19_05594 - hypothetical protein, at 304,610 to 306,085 _05594 Position (kb) 303 304 305Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.427 kb on - strand, within MPMX19_05592at 303.427 kb on - strand, within MPMX19_05592at 303.597 kb on + strand, within MPMX19_05592at 303.597 kb on + strand, within MPMX19_05592at 303.598 kb on - strand, within MPMX19_05592at 303.598 kb on - strand, within MPMX19_05592at 303.598 kb on - strand, within MPMX19_05592at 303.789 kb on + strandat 303.789 kb on + strandat 303.789 kb on + strandat 303.790 kb on - strandat 303.870 kb on + strandat 303.870 kb on + strandat 303.870 kb on + strandat 303.870 kb on + strandat 303.870 kb on + strandat 303.870 kb on + strandat 303.870 kb on + strandat 303.870 kb on + strandat 303.870 kb on + strandat 303.870 kb on + strandat 303.870 kb on + strandat 303.870 kb on + strandat 303.870 kb on + strandat 303.871 kb on - strandat 303.871 kb on - strandat 303.871 kb on - strandat 303.871 kb on - strandat 303.871 kb on - strandat 303.871 kb on - strandat 303.871 kb on - strandat 303.871 kb on - strandat 303.871 kb on - strandat 303.871 kb on - strandat 303.871 kb on - strandat 303.871 kb on - strandat 303.871 kb on - strandat 303.871 kb on - strandat 303.871 kb on - strandat 303.871 kb on - strandat 303.871 kb on - strandat 303.871 kb on - strandat 303.871 kb on - strandat 303.943 kb on + strandat 303.943 kb on + strandat 303.943 kb on + strandat 304.147 kb on + strand, within MPMX19_05593at 304.147 kb on + strand, within MPMX19_05593at 304.148 kb on - strand, within MPMX19_05593at 304.148 kb on - strand, within MPMX19_05593at 304.255 kb on + strand, within MPMX19_05593at 304.255 kb on + strand, within MPMX19_05593at 304.255 kb on + strand, within MPMX19_05593at 304.255 kb on + strand, within MPMX19_05593at 304.256 kb on - strand, within MPMX19_05593at 304.256 kb on - strand, within MPMX19_05593at 304.256 kb on - strand, within MPMX19_05593at 304.256 kb on - strand, within MPMX19_05593at 304.256 kb on - strand, within MPMX19_05593at 305.169 kb on + strand, within MPMX19_05594at 305.169 kb on + strand, within MPMX19_05594at 305.170 kb on - strand, within MPMX19_05594at 305.170 kb on - strand, within MPMX19_05594at 305.170 kb on - strand, within MPMX19_05594at 305.170 kb on - strand, within MPMX19_05594at 305.247 kb on + strand, within MPMX19_05594at 305.247 kb on + strand, within MPMX19_05594at 305.247 kb on + strand, within MPMX19_05594at 305.247 kb on + strand, within MPMX19_05594at 305.247 kb on + strand, within MPMX19_05594at 305.247 kb on + strand, within MPMX19_05594at 305.247 kb on + strand, within MPMX19_05594at 305.247 kb on + strand, within MPMX19_05594at 305.247 kb on + strand, within MPMX19_05594at 305.247 kb on + strand, within MPMX19_05594at 305.247 kb on + strand, within MPMX19_05594at 305.247 kb on + strand, within MPMX19_05594at 305.247 kb on + strand, within MPMX19_05594at 305.247 kb on + strand, within MPMX19_05594at 305.247 kb on + strand, within MPMX19_05594at 305.247 kb on + strand, within MPMX19_05594at 305.247 kb on + strand, within MPMX19_05594at 305.247 kb on + strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.248 kb on - strand, within MPMX19_05594at 305.520 kb on + strand, within MPMX19_05594at 305.520 kb on + strand, within MPMX19_05594at 305.520 kb on + strand, within MPMX19_05594at 305.520 kb on + strand, within MPMX19_05594at 305.521 kb on - strand, within MPMX19_05594at 305.521 kb on - strand, within MPMX19_05594at 305.521 kb on - strand, within MPMX19_05594at 305.577 kb on + strand, within MPMX19_05594at 305.577 kb on + strand, within MPMX19_05594at 305.577 kb on + strand, within MPMX19_05594at 305.577 kb on + strand, within MPMX19_05594at 305.577 kb on + strand, within MPMX19_05594at 305.578 kb on - strand, within MPMX19_05594at 305.578 kb on - strand, within MPMX19_05594at 305.578 kb on - strand, within MPMX19_05594at 305.578 kb on - strand, within MPMX19_05594

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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303,198 + MPMX19_05592 0.24 -1.4
303,198 + MPMX19_05592 0.24 +0.1
303,198 + MPMX19_05592 0.24 -0.2
303,198 + MPMX19_05592 0.24 -0.7
303,198 + MPMX19_05592 0.24 -0.2
303,198 + MPMX19_05592 0.24 -1.7
303,198 + MPMX19_05592 0.24 +0.3
303,198 + MPMX19_05592 0.24 -0.7
303,198 + MPMX19_05592 0.24 -0.7
303,198 + MPMX19_05592 0.24 -0.9
303,198 + MPMX19_05592 0.24 -0.1
303,198 + MPMX19_05592 0.24 -1.8
303,199 - MPMX19_05592 0.24 -1.1
303,199 - MPMX19_05592 0.24 -1.2
303,199 - MPMX19_05592 0.24 +0.2
303,199 - MPMX19_05592 0.24 -0.7
303,199 - MPMX19_05592 0.24 -0.8
303,199 - MPMX19_05592 0.24 -0.8
303,199 - MPMX19_05592 0.24 +0.5
303,199 - MPMX19_05592 0.24 +0.3
303,199 - MPMX19_05592 0.24 -0.2
303,199 - MPMX19_05592 0.24 -0.2
303,199 - MPMX19_05592 0.24 -1.4
303,199 - MPMX19_05592 0.24 -0.9
303,199 - MPMX19_05592 0.24 -1.3
303,199 - MPMX19_05592 0.24 -0.9
303,199 - MPMX19_05592 0.24 +0.2
303,199 - MPMX19_05592 0.24 -0.5
303,427 - MPMX19_05592 0.50 -0.1
303,427 - MPMX19_05592 0.50 +0.9
303,597 + MPMX19_05592 0.69 -0.6
303,597 + MPMX19_05592 0.69 +1.1
303,598 - MPMX19_05592 0.69 -0.1
303,598 - MPMX19_05592 0.69 -0.4
303,598 - MPMX19_05592 0.69 +0.1
303,789 + +0.1
303,789 + -1.5
303,789 + +0.5
303,790 - -0.2
303,870 + -2.3
303,870 + -2.6
303,870 + +0.1
303,870 + +0.5
303,870 + -1.0
303,870 + +0.4
303,870 + -3.2
303,870 + -0.7
303,870 + -2.1
303,870 + -0.4
303,870 + -1.7
303,870 + -1.2
303,870 + -0.9
303,871 - -0.1
303,871 - -1.2
303,871 - +0.8
303,871 - -0.2
303,871 - -1.4
303,871 - -0.0
303,871 - -1.8
303,871 - +0.1
303,871 - +0.3
303,871 - +0.5
303,871 - -1.5
303,871 - -0.0
303,871 - -1.1
303,871 - -0.6
303,871 - -0.2
303,871 - -0.7
303,871 - -2.0
303,871 - +0.1
303,871 - -1.5
303,943 + -0.5
303,943 + -0.1
303,943 + -1.4
304,147 + MPMX19_05593 0.32 -0.5
304,147 + MPMX19_05593 0.32 +0.1
304,148 - MPMX19_05593 0.32 -0.9
304,148 - MPMX19_05593 0.32 -1.1
304,255 + MPMX19_05593 0.48 -1.7
304,255 + MPMX19_05593 0.48 +0.8
304,255 + MPMX19_05593 0.48 -0.1
304,255 + MPMX19_05593 0.48 +0.8
304,256 - MPMX19_05593 0.48 -1.5
304,256 - MPMX19_05593 0.48 -0.9
304,256 - MPMX19_05593 0.48 -1.2
304,256 - MPMX19_05593 0.48 -0.5
304,256 - MPMX19_05593 0.48 -1.7
305,169 + MPMX19_05594 0.38 -0.3
305,169 + MPMX19_05594 0.38 +0.3
305,170 - MPMX19_05594 0.38 -1.3
305,170 - MPMX19_05594 0.38 -0.9
305,170 - MPMX19_05594 0.38 +0.8
305,170 - MPMX19_05594 0.38 -0.4
305,247 + MPMX19_05594 0.43 -0.7
305,247 + MPMX19_05594 0.43 -0.2
305,247 + MPMX19_05594 0.43 +0.3
305,247 + MPMX19_05594 0.43 +0.5
305,247 + MPMX19_05594 0.43 -1.5
305,247 + MPMX19_05594 0.43 +0.7
305,247 + MPMX19_05594 0.43 +0.4
305,247 + MPMX19_05594 0.43 -0.7
305,247 + MPMX19_05594 0.43 +0.1
305,247 + MPMX19_05594 0.43 -0.3
305,247 + MPMX19_05594 0.43 -0.8
305,247 + MPMX19_05594 0.43 -0.1
305,247 + MPMX19_05594 0.43 -1.6
305,247 + MPMX19_05594 0.43 -0.5
305,247 + MPMX19_05594 0.43 -0.6
305,247 + MPMX19_05594 0.43 -1.5
305,247 + MPMX19_05594 0.43 -1.0
305,247 + MPMX19_05594 0.43 +1.4
305,248 - MPMX19_05594 0.43 -0.7
305,248 - MPMX19_05594 0.43 +0.5
305,248 - MPMX19_05594 0.43 +0.1
305,248 - MPMX19_05594 0.43 -0.5
305,248 - MPMX19_05594 0.43 -0.1
305,248 - MPMX19_05594 0.43 -2.7
305,248 - MPMX19_05594 0.43 -1.2
305,248 - MPMX19_05594 0.43 -0.9
305,248 - MPMX19_05594 0.43 -0.7
305,248 - MPMX19_05594 0.43 +0.1
305,248 - MPMX19_05594 0.43 +0.7
305,248 - MPMX19_05594 0.43 +2.1
305,248 - MPMX19_05594 0.43 -2.0
305,248 - MPMX19_05594 0.43 -0.7
305,248 - MPMX19_05594 0.43 -0.7
305,248 - MPMX19_05594 0.43 -1.3
305,248 - MPMX19_05594 0.43 +0.4
305,248 - MPMX19_05594 0.43 -0.0
305,248 - MPMX19_05594 0.43 -2.4
305,248 - MPMX19_05594 0.43 -1.5
305,248 - MPMX19_05594 0.43 -1.7
305,248 - MPMX19_05594 0.43 +0.4
305,248 - MPMX19_05594 0.43 -1.2
305,248 - MPMX19_05594 0.43 -0.3
305,248 - MPMX19_05594 0.43 +0.6
305,248 - MPMX19_05594 0.43 -0.5
305,520 + MPMX19_05594 0.62 -1.4
305,520 + MPMX19_05594 0.62 +0.8
305,520 + MPMX19_05594 0.62 -1.4
305,520 + MPMX19_05594 0.62 +0.5
305,521 - MPMX19_05594 0.62 +0.4
305,521 - MPMX19_05594 0.62 +0.7
305,521 - MPMX19_05594 0.62 -2.5
305,577 + MPMX19_05594 0.66 -1.6
305,577 + MPMX19_05594 0.66 -1.1
305,577 + MPMX19_05594 0.66 -1.0
305,577 + MPMX19_05594 0.66 -0.7
305,577 + MPMX19_05594 0.66 -1.1
305,578 - MPMX19_05594 0.66 -2.3
305,578 - MPMX19_05594 0.66 -1.5
305,578 - MPMX19_05594 0.66 -0.7
305,578 - MPMX19_05594 0.66 -0.3

Or see this region's nucleotide sequence