Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05588 and MPMX19_05589 are separated by 12 nucleotides MPMX19_05589 and MPMX19_05590 are separated by 134 nucleotides MPMX19_05590 and MPMX19_05591 are separated by 31 nucleotides MPMX19_05591 and MPMX19_05592 are separated by 153 nucleotides
MPMX19_05588: MPMX19_05588 - Galactose/methyl galactoside import ATP-binding protein MglA, at 299,049 to 300,593
_05588
MPMX19_05589: MPMX19_05589 - hypothetical protein, at 300,606 to 301,319
_05589
MPMX19_05590: MPMX19_05590 - HTH-type transcriptional regulator SyrM 1, at 301,454 to 302,374
_05590
MPMX19_05591: MPMX19_05591 - hypothetical protein, at 302,406 to 302,834
_05591
MPMX19_05592: MPMX19_05592 - Glycine cleavage system transcriptional activator, at 302,988 to 303,872
_05592
Position (kb) 301
302
303 Strain fitness (log2 ratio) -2
-1
0
1
2 at 300.631 kb on + strand at 300.632 kb on - strand at 300.632 kb on - strand at 300.632 kb on - strand at 300.632 kb on - strand at 300.632 kb on - strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.641 kb on - strand at 300.641 kb on - strand at 300.844 kb on + strand, within MPMX19_05589 at 300.845 kb on - strand, within MPMX19_05589 at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.419 kb on + strand at 301.420 kb on - strand at 301.443 kb on - strand at 301.641 kb on - strand, within MPMX19_05590 at 301.641 kb on - strand, within MPMX19_05590 at 301.641 kb on - strand, within MPMX19_05590 at 302.021 kb on + strand, within MPMX19_05590 at 302.021 kb on + strand, within MPMX19_05590 at 302.021 kb on + strand, within MPMX19_05590 at 302.021 kb on + strand, within MPMX19_05590 at 302.021 kb on + strand, within MPMX19_05590 at 302.022 kb on - strand, within MPMX19_05590 at 302.022 kb on - strand, within MPMX19_05590 at 302.022 kb on - strand, within MPMX19_05590 at 302.022 kb on - strand, within MPMX19_05590 at 302.022 kb on - strand, within MPMX19_05590 at 302.022 kb on - strand, within MPMX19_05590 at 302.135 kb on + strand, within MPMX19_05590 at 302.136 kb on - strand, within MPMX19_05590 at 302.366 kb on + strand at 302.367 kb on - strand at 302.372 kb on + strand at 302.372 kb on + strand at 302.373 kb on - strand at 302.373 kb on - strand at 302.407 kb on + strand at 302.408 kb on - strand at 302.408 kb on - strand at 302.521 kb on + strand, within MPMX19_05591 at 302.521 kb on + strand, within MPMX19_05591 at 302.521 kb on + strand, within MPMX19_05591 at 302.521 kb on + strand, within MPMX19_05591 at 302.521 kb on + strand, within MPMX19_05591 at 302.521 kb on + strand, within MPMX19_05591 at 302.521 kb on + strand, within MPMX19_05591 at 302.521 kb on + strand, within MPMX19_05591 at 302.522 kb on - strand, within MPMX19_05591 at 302.522 kb on - strand, within MPMX19_05591 at 302.522 kb on - strand, within MPMX19_05591 at 302.522 kb on - strand, within MPMX19_05591 at 302.522 kb on - strand, within MPMX19_05591 at 302.522 kb on - strand, within MPMX19_05591 at 302.767 kb on + strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.917 kb on + strand at 302.918 kb on - strand at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 300,631 + +0.5 300,632 - -1.8 300,632 - +0.3 300,632 - -0.5 300,632 - -0.7 300,632 - -2.5 300,640 + -1.6 300,640 + -0.9 300,640 + -1.1 300,640 + -0.2 300,640 + -0.0 300,640 + -1.4 300,640 + +0.9 300,641 - -0.8 300,641 - -0.2 300,844 + MPMX19_05589 0.33 +0.8 300,845 - MPMX19_05589 0.33 -0.8 301,356 + -1.2 301,356 + -0.7 301,356 + -0.8 301,356 + +0.2 301,356 + +0.1 301,356 + -1.6 301,356 + -0.1 301,356 + +0.1 301,356 + -0.9 301,356 + +0.8 301,356 + +0.8 301,356 + -0.5 301,356 + -0.8 301,356 + -0.2 301,356 + -0.9 301,356 + -1.2 301,356 + -0.8 301,356 + +0.9 301,356 + -0.7 301,356 + -0.9 301,356 + +0.4 301,356 + -0.7 301,356 + -1.3 301,356 + -1.9 301,356 + -1.1 301,356 + +0.3 301,356 + +0.5 301,356 + +0.7 301,356 + +2.1 301,357 - -1.0 301,357 - +1.3 301,357 - +0.3 301,357 - -0.5 301,357 - -0.2 301,357 - +1.1 301,357 - -1.2 301,357 - +1.1 301,357 - -2.2 301,357 - -1.2 301,357 - +0.1 301,357 - +0.3 301,357 - -0.4 301,357 - -0.4 301,357 - -2.2 301,357 - -0.1 301,357 - -0.3 301,357 - -1.4 301,357 - +0.5 301,357 - -0.2 301,357 - -0.2 301,357 - +0.9 301,357 - -0.5 301,357 - -0.4 301,357 - +0.3 301,357 - -1.0 301,357 - -2.0 301,357 - -0.5 301,357 - -0.2 301,357 - -0.3 301,357 - -0.0 301,357 - +1.4 301,357 - +2.1 301,419 + -0.4 301,420 - -1.6 301,443 - -1.9 301,641 - MPMX19_05590 0.20 -2.4 301,641 - MPMX19_05590 0.20 -0.2 301,641 - MPMX19_05590 0.20 +0.3 302,021 + MPMX19_05590 0.62 -0.7 302,021 + MPMX19_05590 0.62 -1.0 302,021 + MPMX19_05590 0.62 -1.4 302,021 + MPMX19_05590 0.62 -0.5 302,021 + MPMX19_05590 0.62 -0.4 302,022 - MPMX19_05590 0.62 -1.2 302,022 - MPMX19_05590 0.62 -0.4 302,022 - MPMX19_05590 0.62 -0.5 302,022 - MPMX19_05590 0.62 -0.8 302,022 - MPMX19_05590 0.62 +0.9 302,022 - MPMX19_05590 0.62 -1.6 302,135 + MPMX19_05590 0.74 -1.2 302,136 - MPMX19_05590 0.74 -1.4 302,366 + -0.8 302,367 - +0.1 302,372 + -0.5 302,372 + -1.2 302,373 - -1.4 302,373 - -1.0 302,407 + -1.4 302,408 - -0.2 302,408 - -1.7 302,521 + MPMX19_05591 0.27 -1.7 302,521 + MPMX19_05591 0.27 -0.0 302,521 + MPMX19_05591 0.27 -0.3 302,521 + MPMX19_05591 0.27 -1.7 302,521 + MPMX19_05591 0.27 -0.2 302,521 + MPMX19_05591 0.27 +0.5 302,521 + MPMX19_05591 0.27 -1.4 302,521 + MPMX19_05591 0.27 -1.0 302,522 - MPMX19_05591 0.27 -0.9 302,522 - MPMX19_05591 0.27 -1.7 302,522 - MPMX19_05591 0.27 -0.9 302,522 - MPMX19_05591 0.27 -0.4 302,522 - MPMX19_05591 0.27 +0.7 302,522 - MPMX19_05591 0.27 -2.2 302,767 + MPMX19_05591 0.84 +0.0 302,768 - MPMX19_05591 0.84 -0.0 302,768 - MPMX19_05591 0.84 -1.1 302,768 - MPMX19_05591 0.84 +0.8 302,768 - MPMX19_05591 0.84 -1.7 302,768 - MPMX19_05591 0.84 -0.1 302,768 - MPMX19_05591 0.84 -0.1 302,768 - MPMX19_05591 0.84 -0.5 302,768 - MPMX19_05591 0.84 +0.1 302,768 - MPMX19_05591 0.84 -0.9 302,917 + -0.7 302,918 - -0.9 303,198 + MPMX19_05592 0.24 -1.4 303,198 + MPMX19_05592 0.24 +0.1 303,198 + MPMX19_05592 0.24 -0.2 303,198 + MPMX19_05592 0.24 -0.7 303,198 + MPMX19_05592 0.24 -0.2 303,198 + MPMX19_05592 0.24 -1.7 303,198 + MPMX19_05592 0.24 +0.3 303,198 + MPMX19_05592 0.24 -0.7 303,198 + MPMX19_05592 0.24 -0.7 303,198 + MPMX19_05592 0.24 -0.9 303,198 + MPMX19_05592 0.24 -0.1 303,198 + MPMX19_05592 0.24 -1.8 303,199 - MPMX19_05592 0.24 -1.1 303,199 - MPMX19_05592 0.24 -1.2 303,199 - MPMX19_05592 0.24 +0.2 303,199 - MPMX19_05592 0.24 -0.7 303,199 - MPMX19_05592 0.24 -0.8 303,199 - MPMX19_05592 0.24 -0.8 303,199 - MPMX19_05592 0.24 +0.5 303,199 - MPMX19_05592 0.24 +0.3 303,199 - MPMX19_05592 0.24 -0.2 303,199 - MPMX19_05592 0.24 -0.2 303,199 - MPMX19_05592 0.24 -1.4 303,199 - MPMX19_05592 0.24 -0.9 303,199 - MPMX19_05592 0.24 -1.3 303,199 - MPMX19_05592 0.24 -0.9 303,199 - MPMX19_05592 0.24 +0.2 303,199 - MPMX19_05592 0.24 -0.5
Or see this region's nucleotide sequence