Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05587 and MPMX19_05588 are separated by 14 nucleotides MPMX19_05588 and MPMX19_05589 are separated by 12 nucleotides MPMX19_05589 and MPMX19_05590 are separated by 134 nucleotides
MPMX19_05587: MPMX19_05587 - Membrane lipoprotein TmpC, at 298,039 to 299,034
_05587
MPMX19_05588: MPMX19_05588 - Galactose/methyl galactoside import ATP-binding protein MglA, at 299,049 to 300,593
_05588
MPMX19_05589: MPMX19_05589 - hypothetical protein, at 300,606 to 301,319
_05589
MPMX19_05590: MPMX19_05590 - HTH-type transcriptional regulator SyrM 1, at 301,454 to 302,374
_05590
Position (kb) 299
300
301 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 298.050 kb on + strand at 298.050 kb on + strand at 298.050 kb on + strand at 298.050 kb on + strand at 298.050 kb on + strand at 298.051 kb on - strand at 298.051 kb on - strand at 298.051 kb on - strand at 298.051 kb on - strand at 298.051 kb on - strand at 298.051 kb on - strand at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.190 kb on - strand, within MPMX19_05587 at 298.190 kb on - strand, within MPMX19_05587 at 298.190 kb on - strand, within MPMX19_05587 at 298.190 kb on - strand, within MPMX19_05587 at 298.190 kb on - strand, within MPMX19_05587 at 298.190 kb on - strand, within MPMX19_05587 at 298.191 kb on + strand, within MPMX19_05587 at 298.192 kb on - strand, within MPMX19_05587 at 298.232 kb on - strand, within MPMX19_05587 at 298.550 kb on - strand, within MPMX19_05587 at 298.837 kb on + strand, within MPMX19_05587 at 298.837 kb on + strand, within MPMX19_05587 at 298.837 kb on + strand, within MPMX19_05587 at 298.837 kb on + strand, within MPMX19_05587 at 298.838 kb on - strand, within MPMX19_05587 at 298.919 kb on - strand, within MPMX19_05587 at 298.919 kb on - strand, within MPMX19_05587 at 299.226 kb on + strand, within MPMX19_05588 at 299.226 kb on + strand, within MPMX19_05588 at 299.226 kb on + strand, within MPMX19_05588 at 299.227 kb on - strand, within MPMX19_05588 at 299.227 kb on - strand, within MPMX19_05588 at 299.232 kb on + strand, within MPMX19_05588 at 299.232 kb on + strand, within MPMX19_05588 at 299.232 kb on + strand, within MPMX19_05588 at 299.232 kb on + strand, within MPMX19_05588 at 299.233 kb on - strand, within MPMX19_05588 at 299.233 kb on - strand, within MPMX19_05588 at 299.233 kb on - strand, within MPMX19_05588 at 299.541 kb on + strand, within MPMX19_05588 at 299.541 kb on + strand, within MPMX19_05588 at 300.249 kb on + strand, within MPMX19_05588 at 300.249 kb on + strand, within MPMX19_05588 at 300.250 kb on - strand, within MPMX19_05588 at 300.250 kb on - strand, within MPMX19_05588 at 300.250 kb on - strand, within MPMX19_05588 at 300.631 kb on + strand at 300.632 kb on - strand at 300.632 kb on - strand at 300.632 kb on - strand at 300.632 kb on - strand at 300.632 kb on - strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.641 kb on - strand at 300.641 kb on - strand at 300.844 kb on + strand, within MPMX19_05589 at 300.845 kb on - strand, within MPMX19_05589 at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.419 kb on + strand at 301.420 kb on - strand at 301.443 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 298,050 + +0.5 298,050 + +0.8 298,050 + +0.3 298,050 + -0.9 298,050 + +0.1 298,051 - -1.3 298,051 - -1.3 298,051 - -0.5 298,051 - +0.5 298,051 - +0.1 298,051 - -1.7 298,189 + MPMX19_05587 0.15 -1.1 298,189 + MPMX19_05587 0.15 +0.1 298,189 + MPMX19_05587 0.15 -1.5 298,189 + MPMX19_05587 0.15 -1.1 298,189 + MPMX19_05587 0.15 +0.8 298,189 + MPMX19_05587 0.15 +0.1 298,189 + MPMX19_05587 0.15 -0.8 298,189 + MPMX19_05587 0.15 +0.3 298,189 + MPMX19_05587 0.15 -3.3 298,189 + MPMX19_05587 0.15 +0.1 298,189 + MPMX19_05587 0.15 -0.5 298,189 + MPMX19_05587 0.15 -0.5 298,189 + MPMX19_05587 0.15 -0.7 298,189 + MPMX19_05587 0.15 -1.2 298,189 + MPMX19_05587 0.15 -1.6 298,189 + MPMX19_05587 0.15 +0.1 298,189 + MPMX19_05587 0.15 +1.1 298,189 + MPMX19_05587 0.15 -0.7 298,190 - MPMX19_05587 0.15 -2.0 298,190 - MPMX19_05587 0.15 -1.2 298,190 - MPMX19_05587 0.15 -1.3 298,190 - MPMX19_05587 0.15 -0.3 298,190 - MPMX19_05587 0.15 +0.5 298,190 - MPMX19_05587 0.15 -0.6 298,191 + MPMX19_05587 0.15 +1.4 298,192 - MPMX19_05587 0.15 -0.4 298,232 - MPMX19_05587 0.19 +1.1 298,550 - MPMX19_05587 0.51 -1.6 298,837 + MPMX19_05587 0.80 -0.6 298,837 + MPMX19_05587 0.80 +0.5 298,837 + MPMX19_05587 0.80 -0.5 298,837 + MPMX19_05587 0.80 -0.2 298,838 - MPMX19_05587 0.80 -1.5 298,919 - MPMX19_05587 0.88 -0.2 298,919 - MPMX19_05587 0.88 -0.3 299,226 + MPMX19_05588 0.11 +0.2 299,226 + MPMX19_05588 0.11 -1.5 299,226 + MPMX19_05588 0.11 +0.9 299,227 - MPMX19_05588 0.12 -1.4 299,227 - MPMX19_05588 0.12 -2.0 299,232 + MPMX19_05588 0.12 -0.9 299,232 + MPMX19_05588 0.12 -0.9 299,232 + MPMX19_05588 0.12 -0.6 299,232 + MPMX19_05588 0.12 -1.0 299,233 - MPMX19_05588 0.12 -1.4 299,233 - MPMX19_05588 0.12 +0.1 299,233 - MPMX19_05588 0.12 -0.6 299,541 + MPMX19_05588 0.32 -0.0 299,541 + MPMX19_05588 0.32 -2.0 300,249 + MPMX19_05588 0.78 +1.1 300,249 + MPMX19_05588 0.78 -0.2 300,250 - MPMX19_05588 0.78 +0.1 300,250 - MPMX19_05588 0.78 +0.5 300,250 - MPMX19_05588 0.78 +0.3 300,631 + +0.5 300,632 - -1.8 300,632 - +0.3 300,632 - -0.5 300,632 - -0.7 300,632 - -2.5 300,640 + -1.6 300,640 + -0.9 300,640 + -1.1 300,640 + -0.2 300,640 + -0.0 300,640 + -1.4 300,640 + +0.9 300,641 - -0.8 300,641 - -0.2 300,844 + MPMX19_05589 0.33 +0.8 300,845 - MPMX19_05589 0.33 -0.8 301,356 + -1.2 301,356 + -0.7 301,356 + -0.8 301,356 + +0.2 301,356 + +0.1 301,356 + -1.6 301,356 + -0.1 301,356 + +0.1 301,356 + -0.9 301,356 + +0.8 301,356 + +0.8 301,356 + -0.5 301,356 + -0.8 301,356 + -0.2 301,356 + -0.9 301,356 + -1.2 301,356 + -0.8 301,356 + +0.9 301,356 + -0.7 301,356 + -0.9 301,356 + +0.4 301,356 + -0.7 301,356 + -1.3 301,356 + -1.9 301,356 + -1.1 301,356 + +0.3 301,356 + +0.5 301,356 + +0.7 301,356 + +2.1 301,357 - -1.0 301,357 - +1.3 301,357 - +0.3 301,357 - -0.5 301,357 - -0.2 301,357 - +1.1 301,357 - -1.2 301,357 - +1.1 301,357 - -2.2 301,357 - -1.2 301,357 - +0.1 301,357 - +0.3 301,357 - -0.4 301,357 - -0.4 301,357 - -2.2 301,357 - -0.1 301,357 - -0.3 301,357 - -1.4 301,357 - +0.5 301,357 - -0.2 301,357 - -0.2 301,357 - +0.9 301,357 - -0.5 301,357 - -0.4 301,357 - +0.3 301,357 - -1.0 301,357 - -2.0 301,357 - -0.5 301,357 - -0.2 301,357 - -0.3 301,357 - -0.0 301,357 - +1.4 301,357 - +2.1 301,419 + -0.4 301,420 - -1.6 301,443 - -1.9
Or see this region's nucleotide sequence