Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05585

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05584 and MPMX19_05585 are separated by 293 nucleotidesMPMX19_05585 and MPMX19_05586 are separated by 21 nucleotidesMPMX19_05586 and MPMX19_05587 are separated by 236 nucleotides MPMX19_05584: MPMX19_05584 - hypothetical protein, at 294,471 to 296,171 _05584 MPMX19_05585: MPMX19_05585 - hypothetical protein, at 296,465 to 297,127 _05585 MPMX19_05586: MPMX19_05586 - hypothetical protein, at 297,149 to 297,802 _05586 MPMX19_05587: MPMX19_05587 - Membrane lipoprotein TmpC, at 298,039 to 299,034 _05587 Position (kb) 296 297 298Strain fitness (log2 ratio) -2 -1 0 1 2at 295.807 kb on + strand, within MPMX19_05584at 295.807 kb on + strand, within MPMX19_05584at 295.807 kb on + strand, within MPMX19_05584at 295.807 kb on + strand, within MPMX19_05584at 295.807 kb on + strand, within MPMX19_05584at 295.808 kb on - strand, within MPMX19_05584at 295.808 kb on - strand, within MPMX19_05584at 295.808 kb on - strand, within MPMX19_05584at 295.808 kb on - strand, within MPMX19_05584at 295.808 kb on - strand, within MPMX19_05584at 295.810 kb on + strand, within MPMX19_05584at 295.810 kb on + strand, within MPMX19_05584at 295.811 kb on - strand, within MPMX19_05584at 295.811 kb on - strand, within MPMX19_05584at 295.929 kb on + strand, within MPMX19_05584at 295.966 kb on + strand, within MPMX19_05584at 295.966 kb on + strand, within MPMX19_05584at 295.966 kb on + strand, within MPMX19_05584at 295.966 kb on + strand, within MPMX19_05584at 295.967 kb on - strand, within MPMX19_05584at 295.967 kb on - strand, within MPMX19_05584at 295.967 kb on - strand, within MPMX19_05584at 295.967 kb on - strand, within MPMX19_05584at 295.967 kb on - strand, within MPMX19_05584at 295.967 kb on - strand, within MPMX19_05584at 296.145 kb on - strandat 296.145 kb on - strandat 296.148 kb on + strandat 296.148 kb on + strandat 296.148 kb on + strandat 296.148 kb on + strandat 296.148 kb on + strandat 296.149 kb on - strandat 296.180 kb on - strandat 296.310 kb on - strandat 296.331 kb on + strandat 296.331 kb on + strandat 296.332 kb on - strandat 296.332 kb on - strandat 296.332 kb on - strandat 296.357 kb on + strandat 296.516 kb on + strandat 296.516 kb on + strandat 296.516 kb on + strandat 296.516 kb on + strandat 296.516 kb on + strandat 296.516 kb on + strandat 296.516 kb on + strandat 296.516 kb on + strandat 296.517 kb on - strandat 296.517 kb on - strandat 296.517 kb on - strandat 296.517 kb on - strandat 296.517 kb on - strandat 296.517 kb on - strandat 296.517 kb on - strandat 296.735 kb on + strand, within MPMX19_05585at 296.736 kb on - strand, within MPMX19_05585at 296.736 kb on - strand, within MPMX19_05585at 296.736 kb on - strand, within MPMX19_05585at 296.736 kb on - strand, within MPMX19_05585at 296.736 kb on - strand, within MPMX19_05585at 296.736 kb on - strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.894 kb on + strand, within MPMX19_05585at 296.895 kb on - strand, within MPMX19_05585at 296.895 kb on - strand, within MPMX19_05585at 296.895 kb on - strand, within MPMX19_05585at 296.895 kb on - strand, within MPMX19_05585at 296.895 kb on - strand, within MPMX19_05585at 296.954 kb on + strand, within MPMX19_05585at 296.954 kb on + strand, within MPMX19_05585at 296.954 kb on + strand, within MPMX19_05585at 296.954 kb on + strand, within MPMX19_05585at 296.954 kb on + strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.955 kb on - strand, within MPMX19_05585at 296.996 kb on + strand, within MPMX19_05585at 296.996 kb on + strand, within MPMX19_05585at 296.996 kb on + strand, within MPMX19_05585at 296.997 kb on - strand, within MPMX19_05585at 296.997 kb on - strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.035 kb on + strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.036 kb on - strand, within MPMX19_05585at 297.642 kb on + strand, within MPMX19_05586at 297.642 kb on + strand, within MPMX19_05586at 297.642 kb on + strand, within MPMX19_05586at 297.642 kb on + strand, within MPMX19_05586at 297.642 kb on + strand, within MPMX19_05586at 297.643 kb on - strand, within MPMX19_05586at 297.643 kb on - strand, within MPMX19_05586at 297.643 kb on - strand, within MPMX19_05586at 297.643 kb on - strand, within MPMX19_05586at 297.825 kb on + strandat 297.905 kb on + strandat 297.905 kb on + strandat 297.906 kb on - strandat 298.050 kb on + strandat 298.050 kb on + strandat 298.050 kb on + strandat 298.050 kb on + strandat 298.050 kb on + strandat 298.051 kb on - strandat 298.051 kb on - strandat 298.051 kb on - strandat 298.051 kb on - strandat 298.051 kb on - strandat 298.051 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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295,807 + MPMX19_05584 0.79 -0.2
295,807 + MPMX19_05584 0.79 +0.9
295,807 + MPMX19_05584 0.79 -0.5
295,807 + MPMX19_05584 0.79 -0.4
295,807 + MPMX19_05584 0.79 +0.8
295,808 - MPMX19_05584 0.79 +0.5
295,808 - MPMX19_05584 0.79 -0.1
295,808 - MPMX19_05584 0.79 -0.1
295,808 - MPMX19_05584 0.79 -1.5
295,808 - MPMX19_05584 0.79 -1.6
295,810 + MPMX19_05584 0.79 -0.7
295,810 + MPMX19_05584 0.79 +1.1
295,811 - MPMX19_05584 0.79 -2.0
295,811 - MPMX19_05584 0.79 -1.2
295,929 + MPMX19_05584 0.86 -1.0
295,966 + MPMX19_05584 0.88 +1.1
295,966 + MPMX19_05584 0.88 -2.3
295,966 + MPMX19_05584 0.88 -0.9
295,966 + MPMX19_05584 0.88 -0.4
295,967 - MPMX19_05584 0.88 -0.2
295,967 - MPMX19_05584 0.88 +0.3
295,967 - MPMX19_05584 0.88 +2.1
295,967 - MPMX19_05584 0.88 -0.1
295,967 - MPMX19_05584 0.88 -1.7
295,967 - MPMX19_05584 0.88 -1.5
296,145 - -0.2
296,145 - +0.0
296,148 + -1.4
296,148 + -0.8
296,148 + -0.7
296,148 + +1.8
296,148 + +0.2
296,149 - +0.1
296,180 - -1.3
296,310 - +0.8
296,331 + -1.5
296,331 + -0.9
296,332 - -0.0
296,332 - -0.1
296,332 - -0.1
296,357 + +0.0
296,516 + -0.5
296,516 + -0.4
296,516 + -0.4
296,516 + -2.2
296,516 + +0.4
296,516 + -1.0
296,516 + -1.1
296,516 + +0.1
296,517 - -0.0
296,517 - +0.8
296,517 - -0.2
296,517 - -1.2
296,517 - +0.7
296,517 - -1.9
296,517 - +0.4
296,735 + MPMX19_05585 0.41 +0.9
296,736 - MPMX19_05585 0.41 +0.1
296,736 - MPMX19_05585 0.41 -1.3
296,736 - MPMX19_05585 0.41 -0.2
296,736 - MPMX19_05585 0.41 -1.2
296,736 - MPMX19_05585 0.41 -0.6
296,736 - MPMX19_05585 0.41 -0.0
296,894 + MPMX19_05585 0.65 +0.1
296,894 + MPMX19_05585 0.65 -0.5
296,894 + MPMX19_05585 0.65 +1.3
296,894 + MPMX19_05585 0.65 +0.7
296,894 + MPMX19_05585 0.65 -0.7
296,894 + MPMX19_05585 0.65 +0.9
296,894 + MPMX19_05585 0.65 -1.7
296,894 + MPMX19_05585 0.65 -1.6
296,894 + MPMX19_05585 0.65 +1.7
296,895 - MPMX19_05585 0.65 -0.3
296,895 - MPMX19_05585 0.65 -0.1
296,895 - MPMX19_05585 0.65 -0.6
296,895 - MPMX19_05585 0.65 +0.1
296,895 - MPMX19_05585 0.65 +1.3
296,954 + MPMX19_05585 0.74 -0.8
296,954 + MPMX19_05585 0.74 -0.2
296,954 + MPMX19_05585 0.74 -0.9
296,954 + MPMX19_05585 0.74 +0.3
296,954 + MPMX19_05585 0.74 +0.4
296,955 - MPMX19_05585 0.74 -0.0
296,955 - MPMX19_05585 0.74 -0.1
296,955 - MPMX19_05585 0.74 -0.0
296,955 - MPMX19_05585 0.74 -1.9
296,955 - MPMX19_05585 0.74 +0.4
296,955 - MPMX19_05585 0.74 +0.1
296,955 - MPMX19_05585 0.74 +0.6
296,955 - MPMX19_05585 0.74 -0.5
296,955 - MPMX19_05585 0.74 -0.5
296,955 - MPMX19_05585 0.74 +1.1
296,955 - MPMX19_05585 0.74 +0.5
296,955 - MPMX19_05585 0.74 -1.5
296,996 + MPMX19_05585 0.80 +0.6
296,996 + MPMX19_05585 0.80 -0.5
296,996 + MPMX19_05585 0.80 -0.2
296,997 - MPMX19_05585 0.80 -0.5
296,997 - MPMX19_05585 0.80 -0.7
297,035 + MPMX19_05585 0.86 -0.3
297,035 + MPMX19_05585 0.86 +1.1
297,035 + MPMX19_05585 0.86 +0.8
297,035 + MPMX19_05585 0.86 +1.8
297,035 + MPMX19_05585 0.86 -1.0
297,035 + MPMX19_05585 0.86 -0.9
297,035 + MPMX19_05585 0.86 -0.5
297,035 + MPMX19_05585 0.86 +0.1
297,035 + MPMX19_05585 0.86 -0.9
297,035 + MPMX19_05585 0.86 +0.3
297,035 + MPMX19_05585 0.86 -0.4
297,036 - MPMX19_05585 0.86 -0.3
297,036 - MPMX19_05585 0.86 -0.7
297,036 - MPMX19_05585 0.86 +0.2
297,036 - MPMX19_05585 0.86 +0.5
297,036 - MPMX19_05585 0.86 +1.1
297,036 - MPMX19_05585 0.86 +0.7
297,036 - MPMX19_05585 0.86 -0.5
297,036 - MPMX19_05585 0.86 -0.2
297,036 - MPMX19_05585 0.86 +0.1
297,642 + MPMX19_05586 0.75 +0.5
297,642 + MPMX19_05586 0.75 +2.1
297,642 + MPMX19_05586 0.75 +0.5
297,642 + MPMX19_05586 0.75 -0.7
297,642 + MPMX19_05586 0.75 -0.9
297,643 - MPMX19_05586 0.76 +0.5
297,643 - MPMX19_05586 0.76 -0.5
297,643 - MPMX19_05586 0.76 +1.1
297,643 - MPMX19_05586 0.76 +1.3
297,825 + -0.7
297,905 + -0.3
297,905 + +0.7
297,906 - -0.0
298,050 + +0.5
298,050 + +0.8
298,050 + +0.3
298,050 + -0.9
298,050 + +0.1
298,051 - -1.3
298,051 - -1.3
298,051 - -0.5
298,051 - +0.5
298,051 - +0.1
298,051 - -1.7

Or see this region's nucleotide sequence