Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05551 and MPMX19_05552 are separated by 10 nucleotides MPMX19_05552 and MPMX19_05553 are separated by 40 nucleotides MPMX19_05553 and MPMX19_05554 overlap by 4 nucleotides
MPMX19_05551: MPMX19_05551 - Chemotaxis protein CheY, at 259,342 to 259,737
_05551
MPMX19_05552: MPMX19_05552 - hypothetical protein, at 259,748 to 260,380
_05552
MPMX19_05553: MPMX19_05553 - hypothetical protein, at 260,421 to 262,397
_05553
MPMX19_05554: MPMX19_05554 - hypothetical protein, at 262,394 to 264,079
_05554
Position (kb) 260
261
262
263 Strain fitness (log2 ratio) -2
-1
0
1 at 259.508 kb on - strand, within MPMX19_05551 at 259.508 kb on - strand, within MPMX19_05551 at 259.508 kb on - strand, within MPMX19_05551 at 259.508 kb on - strand, within MPMX19_05551 at 260.357 kb on + strand at 260.357 kb on + strand at 260.357 kb on + strand at 260.357 kb on + strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.359 kb on + strand at 260.360 kb on - strand at 260.360 kb on - strand at 260.360 kb on - strand at 260.414 kb on - strand at 260.917 kb on + strand, within MPMX19_05553 at 260.917 kb on + strand, within MPMX19_05553 at 260.917 kb on + strand, within MPMX19_05553 at 260.917 kb on + strand, within MPMX19_05553 at 260.917 kb on + strand, within MPMX19_05553 at 260.917 kb on + strand, within MPMX19_05553 at 260.917 kb on + strand, within MPMX19_05553 at 260.918 kb on - strand, within MPMX19_05553 at 260.918 kb on - strand, within MPMX19_05553 at 260.918 kb on - strand, within MPMX19_05553 at 261.758 kb on + strand, within MPMX19_05553 at 261.759 kb on - strand, within MPMX19_05553
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 259,508 - MPMX19_05551 0.42 -2.4 259,508 - MPMX19_05551 0.42 -0.2 259,508 - MPMX19_05551 0.42 +0.1 259,508 - MPMX19_05551 0.42 -0.5 260,357 + -0.6 260,357 + -0.2 260,357 + +1.0 260,357 + -0.9 260,358 - -0.6 260,358 - -0.2 260,358 - -0.5 260,358 - +0.5 260,358 - +0.5 260,358 - +0.5 260,358 - -0.1 260,358 - -0.6 260,358 - +1.1 260,358 - -0.5 260,358 - -0.2 260,359 + -0.8 260,360 - -0.2 260,360 - -0.2 260,360 - -1.4 260,414 - +0.2 260,917 + MPMX19_05553 0.25 -0.7 260,917 + MPMX19_05553 0.25 +0.1 260,917 + MPMX19_05553 0.25 -0.2 260,917 + MPMX19_05553 0.25 -0.5 260,917 + MPMX19_05553 0.25 -0.9 260,917 + MPMX19_05553 0.25 -0.9 260,917 + MPMX19_05553 0.25 -0.7 260,918 - MPMX19_05553 0.25 +0.5 260,918 - MPMX19_05553 0.25 -1.6 260,918 - MPMX19_05553 0.25 -0.1 261,758 + MPMX19_05553 0.68 -0.8 261,759 - MPMX19_05553 0.68 -1.5
Or see this region's nucleotide sequence