Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05549

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05547 and MPMX19_05548 overlap by 23 nucleotidesMPMX19_05548 and MPMX19_05549 are separated by 42 nucleotidesMPMX19_05549 and MPMX19_05550 overlap by 4 nucleotides MPMX19_05547: MPMX19_05547 - Methionine import ATP-binding protein MetN, at 252,889 to 253,941 _05547 MPMX19_05548: MPMX19_05548 - D-methionine transport system permease protein MetI, at 253,919 to 254,587 _05548 MPMX19_05549: MPMX19_05549 - D-methionine-binding lipoprotein MetQ, at 254,630 to 255,421 _05549 MPMX19_05550: MPMX19_05550 - Photosystem I assembly protein Ycf3, at 255,418 to 259,158 _05550 Position (kb) 254 255 256Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 254.133 kb on + strand, within MPMX19_05548at 254.133 kb on + strand, within MPMX19_05548at 254.133 kb on + strand, within MPMX19_05548at 254.133 kb on + strand, within MPMX19_05548at 254.133 kb on + strand, within MPMX19_05548at 254.133 kb on + strand, within MPMX19_05548at 254.133 kb on + strand, within MPMX19_05548at 254.133 kb on + strand, within MPMX19_05548at 254.133 kb on + strand, within MPMX19_05548at 254.134 kb on - strand, within MPMX19_05548at 254.134 kb on - strand, within MPMX19_05548at 254.134 kb on - strand, within MPMX19_05548at 254.134 kb on - strand, within MPMX19_05548at 254.134 kb on - strand, within MPMX19_05548at 254.134 kb on - strand, within MPMX19_05548at 254.462 kb on + strand, within MPMX19_05548at 254.463 kb on - strand, within MPMX19_05548at 254.463 kb on - strand, within MPMX19_05548at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.882 kb on + strand, within MPMX19_05549at 254.882 kb on + strand, within MPMX19_05549at 254.883 kb on - strand, within MPMX19_05549at 254.883 kb on - strand, within MPMX19_05549at 254.883 kb on - strand, within MPMX19_05549at 254.883 kb on - strand, within MPMX19_05549at 254.945 kb on + strand, within MPMX19_05549at 254.946 kb on - strand, within MPMX19_05549at 254.946 kb on - strand, within MPMX19_05549at 254.946 kb on - strand, within MPMX19_05549at 254.960 kb on + strand, within MPMX19_05549at 254.960 kb on + strand, within MPMX19_05549at 254.960 kb on + strand, within MPMX19_05549at 254.960 kb on + strand, within MPMX19_05549at 254.960 kb on + strand, within MPMX19_05549at 254.960 kb on + strand, within MPMX19_05549at 254.960 kb on + strand, within MPMX19_05549at 254.960 kb on + strand, within MPMX19_05549at 254.960 kb on + strand, within MPMX19_05549at 254.960 kb on + strand, within MPMX19_05549at 254.960 kb on + strand, within MPMX19_05549at 254.960 kb on + strand, within MPMX19_05549at 254.960 kb on + strand, within MPMX19_05549at 254.960 kb on + strand, within MPMX19_05549at 254.960 kb on + strand, within MPMX19_05549at 254.960 kb on + strand, within MPMX19_05549at 254.960 kb on + strand, within MPMX19_05549at 254.960 kb on + strand, within MPMX19_05549at 254.961 kb on - strand, within MPMX19_05549at 254.961 kb on - strand, within MPMX19_05549at 254.961 kb on - strand, within MPMX19_05549at 254.961 kb on - strand, within MPMX19_05549at 254.961 kb on - strand, within MPMX19_05549at 254.961 kb on - strand, within MPMX19_05549at 254.961 kb on - strand, within MPMX19_05549at 255.284 kb on + strand, within MPMX19_05549at 255.284 kb on + strand, within MPMX19_05549at 255.284 kb on + strand, within MPMX19_05549at 255.285 kb on - strand, within MPMX19_05549at 255.285 kb on - strand, within MPMX19_05549at 255.285 kb on - strand, within MPMX19_05549at 255.285 kb on - strand, within MPMX19_05549at 255.353 kb on + strandat 255.353 kb on + strandat 255.353 kb on + strandat 255.353 kb on + strandat 255.353 kb on + strandat 255.353 kb on + strandat 255.353 kb on + strandat 255.353 kb on + strandat 255.353 kb on + strandat 255.353 kb on + strandat 255.353 kb on + strandat 255.353 kb on + strandat 255.353 kb on + strandat 255.353 kb on + strandat 255.353 kb on + strandat 255.353 kb on + strandat 255.354 kb on - strandat 255.354 kb on - strandat 255.354 kb on - strandat 255.354 kb on - strandat 255.354 kb on - strandat 255.354 kb on - strandat 255.354 kb on - strandat 255.354 kb on - strandat 255.354 kb on - strandat 255.354 kb on - strandat 255.354 kb on - strandat 255.354 kb on - strandat 255.354 kb on - strandat 255.419 kb on + strandat 255.419 kb on + strandat 255.419 kb on + strandat 255.420 kb on - strandat 255.420 kb on - strandat 255.420 kb on - strandat 255.420 kb on - strandat 255.521 kb on + strandat 255.521 kb on + strandat 255.522 kb on - strandat 255.761 kb on + strandat 255.761 kb on + strandat 255.761 kb on + strandat 255.761 kb on + strandat 255.761 kb on + strandat 255.761 kb on + strandat 255.762 kb on - strandat 255.762 kb on - strandat 255.762 kb on - strandat 255.762 kb on - strandat 255.762 kb on - strandat 255.762 kb on - strandat 255.762 kb on - strandat 255.762 kb on - strandat 255.762 kb on - strandat 255.827 kb on + strand, within MPMX19_05550at 255.827 kb on + strand, within MPMX19_05550at 255.827 kb on + strand, within MPMX19_05550at 255.827 kb on + strand, within MPMX19_05550at 255.827 kb on + strand, within MPMX19_05550at 255.827 kb on + strand, within MPMX19_05550at 255.827 kb on + strand, within MPMX19_05550at 255.827 kb on + strand, within MPMX19_05550at 255.827 kb on + strand, within MPMX19_05550at 255.828 kb on - strand, within MPMX19_05550at 255.828 kb on - strand, within MPMX19_05550at 255.828 kb on - strand, within MPMX19_05550at 255.828 kb on - strand, within MPMX19_05550at 255.828 kb on - strand, within MPMX19_05550at 255.828 kb on - strand, within MPMX19_05550at 255.828 kb on - strand, within MPMX19_05550at 255.828 kb on - strand, within MPMX19_05550at 255.828 kb on - strand, within MPMX19_05550at 255.828 kb on - strand, within MPMX19_05550at 255.877 kb on + strand, within MPMX19_05550at 255.877 kb on + strand, within MPMX19_05550at 255.877 kb on + strand, within MPMX19_05550at 255.878 kb on - strand, within MPMX19_05550at 255.878 kb on - strand, within MPMX19_05550at 255.878 kb on - strand, within MPMX19_05550at 255.878 kb on - strand, within MPMX19_05550at 255.878 kb on - strand, within MPMX19_05550at 256.352 kb on + strand, within MPMX19_05550at 256.352 kb on + strand, within MPMX19_05550at 256.352 kb on + strand, within MPMX19_05550at 256.353 kb on - strand, within MPMX19_05550at 256.409 kb on + strand, within MPMX19_05550

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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254,133 + MPMX19_05548 0.32 -0.1
254,133 + MPMX19_05548 0.32 +0.5
254,133 + MPMX19_05548 0.32 -0.7
254,133 + MPMX19_05548 0.32 -1.9
254,133 + MPMX19_05548 0.32 -0.9
254,133 + MPMX19_05548 0.32 +0.8
254,133 + MPMX19_05548 0.32 +0.2
254,133 + MPMX19_05548 0.32 -0.2
254,133 + MPMX19_05548 0.32 -1.2
254,134 - MPMX19_05548 0.32 +0.9
254,134 - MPMX19_05548 0.32 +0.8
254,134 - MPMX19_05548 0.32 -0.6
254,134 - MPMX19_05548 0.32 -0.2
254,134 - MPMX19_05548 0.32 -0.7
254,134 - MPMX19_05548 0.32 +0.9
254,462 + MPMX19_05548 0.81 -1.1
254,463 - MPMX19_05548 0.81 -1.2
254,463 - MPMX19_05548 0.81 -1.1
254,816 + MPMX19_05549 0.23 +0.8
254,816 + MPMX19_05549 0.23 -0.9
254,816 + MPMX19_05549 0.23 -0.9
254,816 + MPMX19_05549 0.23 -0.4
254,816 + MPMX19_05549 0.23 -0.8
254,816 + MPMX19_05549 0.23 +0.4
254,816 + MPMX19_05549 0.23 +1.6
254,816 + MPMX19_05549 0.23 +0.3
254,816 + MPMX19_05549 0.23 -1.3
254,816 + MPMX19_05549 0.23 +0.7
254,816 + MPMX19_05549 0.23 -1.3
254,816 + MPMX19_05549 0.23 -1.2
254,816 + MPMX19_05549 0.23 -0.3
254,816 + MPMX19_05549 0.23 -0.9
254,816 + MPMX19_05549 0.23 -0.3
254,816 + MPMX19_05549 0.23 -1.0
254,816 + MPMX19_05549 0.23 -0.1
254,816 + MPMX19_05549 0.23 -0.3
254,816 + MPMX19_05549 0.23 -2.0
254,816 + MPMX19_05549 0.23 -0.4
254,816 + MPMX19_05549 0.23 -0.8
254,816 + MPMX19_05549 0.23 -0.8
254,816 + MPMX19_05549 0.23 -0.3
254,816 + MPMX19_05549 0.23 -1.2
254,816 + MPMX19_05549 0.23 -0.1
254,816 + MPMX19_05549 0.23 -0.7
254,817 - MPMX19_05549 0.24 -1.3
254,817 - MPMX19_05549 0.24 -0.5
254,817 - MPMX19_05549 0.24 -2.0
254,817 - MPMX19_05549 0.24 -0.3
254,817 - MPMX19_05549 0.24 +0.1
254,817 - MPMX19_05549 0.24 -0.0
254,817 - MPMX19_05549 0.24 -2.0
254,817 - MPMX19_05549 0.24 -1.9
254,817 - MPMX19_05549 0.24 -1.5
254,817 - MPMX19_05549 0.24 -1.5
254,817 - MPMX19_05549 0.24 -0.1
254,817 - MPMX19_05549 0.24 -1.1
254,817 - MPMX19_05549 0.24 +0.1
254,817 - MPMX19_05549 0.24 -0.8
254,817 - MPMX19_05549 0.24 -1.6
254,817 - MPMX19_05549 0.24 -1.1
254,817 - MPMX19_05549 0.24 -0.7
254,817 - MPMX19_05549 0.24 -0.9
254,817 - MPMX19_05549 0.24 -0.9
254,817 - MPMX19_05549 0.24 -0.7
254,817 - MPMX19_05549 0.24 -0.9
254,817 - MPMX19_05549 0.24 -0.7
254,882 + MPMX19_05549 0.32 +0.1
254,882 + MPMX19_05549 0.32 +1.1
254,883 - MPMX19_05549 0.32 -0.9
254,883 - MPMX19_05549 0.32 -0.5
254,883 - MPMX19_05549 0.32 -0.5
254,883 - MPMX19_05549 0.32 -1.7
254,945 + MPMX19_05549 0.40 +0.3
254,946 - MPMX19_05549 0.40 -2.2
254,946 - MPMX19_05549 0.40 +1.1
254,946 - MPMX19_05549 0.40 +0.1
254,960 + MPMX19_05549 0.42 -0.3
254,960 + MPMX19_05549 0.42 -0.0
254,960 + MPMX19_05549 0.42 +0.4
254,960 + MPMX19_05549 0.42 -1.0
254,960 + MPMX19_05549 0.42 -0.8
254,960 + MPMX19_05549 0.42 -1.3
254,960 + MPMX19_05549 0.42 -0.7
254,960 + MPMX19_05549 0.42 +0.8
254,960 + MPMX19_05549 0.42 -0.9
254,960 + MPMX19_05549 0.42 +0.7
254,960 + MPMX19_05549 0.42 -0.2
254,960 + MPMX19_05549 0.42 +1.9
254,960 + MPMX19_05549 0.42 -0.5
254,960 + MPMX19_05549 0.42 -1.2
254,960 + MPMX19_05549 0.42 +0.1
254,960 + MPMX19_05549 0.42 -1.1
254,960 + MPMX19_05549 0.42 -0.8
254,960 + MPMX19_05549 0.42 -1.1
254,961 - MPMX19_05549 0.42 +0.7
254,961 - MPMX19_05549 0.42 -1.2
254,961 - MPMX19_05549 0.42 -1.7
254,961 - MPMX19_05549 0.42 -0.5
254,961 - MPMX19_05549 0.42 -1.8
254,961 - MPMX19_05549 0.42 -1.4
254,961 - MPMX19_05549 0.42 +0.5
255,284 + MPMX19_05549 0.83 -1.5
255,284 + MPMX19_05549 0.83 -1.0
255,284 + MPMX19_05549 0.83 -0.7
255,285 - MPMX19_05549 0.83 -1.7
255,285 - MPMX19_05549 0.83 -0.2
255,285 - MPMX19_05549 0.83 +0.3
255,285 - MPMX19_05549 0.83 -0.7
255,353 + -0.6
255,353 + -1.8
255,353 + +0.3
255,353 + -0.8
255,353 + -1.5
255,353 + +0.5
255,353 + -0.3
255,353 + -0.4
255,353 + +0.2
255,353 + -1.1
255,353 + +0.1
255,353 + -0.6
255,353 + -0.3
255,353 + +0.7
255,353 + -1.2
255,353 + -1.2
255,354 - -0.1
255,354 - -0.5
255,354 - -1.2
255,354 - +0.8
255,354 - -0.2
255,354 - +1.5
255,354 - -2.0
255,354 - -0.9
255,354 - -1.8
255,354 - -3.4
255,354 - -0.6
255,354 - -2.1
255,354 - -0.1
255,419 + -1.8
255,419 + +0.1
255,419 + -2.1
255,420 - -0.8
255,420 - -0.2
255,420 - -0.5
255,420 - -1.0
255,521 + -0.5
255,521 + -0.6
255,522 - -0.1
255,761 + -0.2
255,761 + -0.9
255,761 + +0.1
255,761 + -0.3
255,761 + +0.1
255,761 + +0.4
255,762 - -1.1
255,762 - -1.5
255,762 - +0.7
255,762 - -1.0
255,762 - -0.2
255,762 - -0.3
255,762 - +0.1
255,762 - -0.5
255,762 - +0.0
255,827 + MPMX19_05550 0.11 -1.5
255,827 + MPMX19_05550 0.11 -1.5
255,827 + MPMX19_05550 0.11 +0.3
255,827 + MPMX19_05550 0.11 +1.6
255,827 + MPMX19_05550 0.11 -0.1
255,827 + MPMX19_05550 0.11 -0.7
255,827 + MPMX19_05550 0.11 -0.5
255,827 + MPMX19_05550 0.11 -1.0
255,827 + MPMX19_05550 0.11 -0.5
255,828 - MPMX19_05550 0.11 -1.5
255,828 - MPMX19_05550 0.11 -0.7
255,828 - MPMX19_05550 0.11 -0.2
255,828 - MPMX19_05550 0.11 -0.5
255,828 - MPMX19_05550 0.11 +0.6
255,828 - MPMX19_05550 0.11 -0.7
255,828 - MPMX19_05550 0.11 -1.2
255,828 - MPMX19_05550 0.11 +0.8
255,828 - MPMX19_05550 0.11 -1.7
255,828 - MPMX19_05550 0.11 +0.1
255,877 + MPMX19_05550 0.12 -0.6
255,877 + MPMX19_05550 0.12 +0.1
255,877 + MPMX19_05550 0.12 -0.1
255,878 - MPMX19_05550 0.12 -0.1
255,878 - MPMX19_05550 0.12 +1.4
255,878 - MPMX19_05550 0.12 -1.4
255,878 - MPMX19_05550 0.12 -0.6
255,878 - MPMX19_05550 0.12 -0.2
256,352 + MPMX19_05550 0.25 +0.7
256,352 + MPMX19_05550 0.25 +1.3
256,352 + MPMX19_05550 0.25 +0.7
256,353 - MPMX19_05550 0.25 +0.5
256,409 + MPMX19_05550 0.26 -0.9

Or see this region's nucleotide sequence