Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05542

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05540 and MPMX19_05541 are separated by 22 nucleotidesMPMX19_05541 and MPMX19_05542 are separated by 16 nucleotidesMPMX19_05542 and MPMX19_05543 are separated by 46 nucleotides MPMX19_05540: MPMX19_05540 - hypothetical protein, at 246,977 to 248,209 _05540 MPMX19_05541: MPMX19_05541 - Arsenate reductase, at 248,232 to 248,699 _05541 MPMX19_05542: MPMX19_05542 - hypothetical protein, at 248,716 to 249,201 _05542 MPMX19_05543: MPMX19_05543 - Histidinol dehydrogenase, at 249,248 to 250,552 _05543 Position (kb) 248 249 250Strain fitness (log2 ratio) -2 -1 0 1 2at 247.794 kb on + strand, within MPMX19_05540at 247.794 kb on + strand, within MPMX19_05540at 247.795 kb on - strand, within MPMX19_05540at 247.922 kb on + strand, within MPMX19_05540at 247.922 kb on + strand, within MPMX19_05540at 247.923 kb on - strand, within MPMX19_05540at 247.923 kb on - strand, within MPMX19_05540at 247.923 kb on - strand, within MPMX19_05540at 248.305 kb on + strand, within MPMX19_05541at 248.305 kb on + strand, within MPMX19_05541at 248.305 kb on + strand, within MPMX19_05541at 248.305 kb on + strand, within MPMX19_05541at 248.305 kb on + strand, within MPMX19_05541at 248.306 kb on - strand, within MPMX19_05541at 248.306 kb on - strand, within MPMX19_05541at 248.575 kb on + strand, within MPMX19_05541at 248.575 kb on + strand, within MPMX19_05541at 248.575 kb on + strand, within MPMX19_05541at 248.575 kb on + strand, within MPMX19_05541at 248.575 kb on + strand, within MPMX19_05541at 248.575 kb on + strand, within MPMX19_05541at 248.575 kb on + strand, within MPMX19_05541at 248.575 kb on + strand, within MPMX19_05541at 248.575 kb on + strand, within MPMX19_05541at 248.575 kb on + strand, within MPMX19_05541at 248.575 kb on + strand, within MPMX19_05541at 248.575 kb on + strand, within MPMX19_05541at 248.575 kb on + strand, within MPMX19_05541at 248.575 kb on + strand, within MPMX19_05541at 248.575 kb on + strand, within MPMX19_05541at 248.575 kb on + strand, within MPMX19_05541at 248.575 kb on + strand, within MPMX19_05541at 248.575 kb on + strand, within MPMX19_05541at 248.575 kb on + strand, within MPMX19_05541at 248.576 kb on - strand, within MPMX19_05541at 248.576 kb on - strand, within MPMX19_05541at 248.576 kb on - strand, within MPMX19_05541at 248.576 kb on - strand, within MPMX19_05541at 248.576 kb on - strand, within MPMX19_05541at 248.576 kb on - strand, within MPMX19_05541at 248.576 kb on - strand, within MPMX19_05541at 248.576 kb on - strand, within MPMX19_05541at 248.576 kb on - strand, within MPMX19_05541at 248.576 kb on - strand, within MPMX19_05541at 248.576 kb on - strand, within MPMX19_05541at 248.576 kb on - strand, within MPMX19_05541at 248.576 kb on - strand, within MPMX19_05541at 248.576 kb on - strand, within MPMX19_05541at 248.576 kb on - strand, within MPMX19_05541at 248.593 kb on + strand, within MPMX19_05541at 248.593 kb on + strand, within MPMX19_05541at 248.593 kb on + strand, within MPMX19_05541at 248.593 kb on + strand, within MPMX19_05541at 248.594 kb on - strand, within MPMX19_05541at 248.638 kb on + strand, within MPMX19_05541at 248.638 kb on + strand, within MPMX19_05541at 248.638 kb on + strand, within MPMX19_05541at 248.638 kb on + strand, within MPMX19_05541at 248.638 kb on + strand, within MPMX19_05541at 248.638 kb on + strand, within MPMX19_05541at 248.638 kb on + strand, within MPMX19_05541at 248.638 kb on + strand, within MPMX19_05541at 248.638 kb on + strand, within MPMX19_05541at 248.638 kb on + strand, within MPMX19_05541at 248.638 kb on + strand, within MPMX19_05541at 248.638 kb on + strand, within MPMX19_05541at 248.638 kb on + strand, within MPMX19_05541at 248.638 kb on + strand, within MPMX19_05541at 248.638 kb on + strand, within MPMX19_05541at 248.638 kb on + strand, within MPMX19_05541at 248.638 kb on + strand, within MPMX19_05541at 248.638 kb on + strand, within MPMX19_05541at 248.638 kb on + strand, within MPMX19_05541at 248.638 kb on + strand, within MPMX19_05541at 248.639 kb on - strand, within MPMX19_05541at 248.639 kb on - strand, within MPMX19_05541at 248.639 kb on - strand, within MPMX19_05541at 248.639 kb on - strand, within MPMX19_05541at 248.639 kb on - strand, within MPMX19_05541at 248.639 kb on - strand, within MPMX19_05541at 248.639 kb on - strand, within MPMX19_05541at 248.639 kb on - strand, within MPMX19_05541at 248.639 kb on - strand, within MPMX19_05541at 248.639 kb on - strand, within MPMX19_05541at 248.639 kb on - strand, within MPMX19_05541at 248.639 kb on - strand, within MPMX19_05541at 248.639 kb on - strand, within MPMX19_05541at 248.639 kb on - strand, within MPMX19_05541at 248.639 kb on - strand, within MPMX19_05541at 248.639 kb on - strand, within MPMX19_05541at 248.639 kb on - strand, within MPMX19_05541at 248.639 kb on - strand, within MPMX19_05541at 248.639 kb on - strand, within MPMX19_05541at 248.639 kb on - strand, within MPMX19_05541at 248.642 kb on + strand, within MPMX19_05541at 248.642 kb on + strand, within MPMX19_05541at 248.642 kb on + strand, within MPMX19_05541at 248.642 kb on + strand, within MPMX19_05541at 248.642 kb on + strand, within MPMX19_05541at 248.643 kb on - strand, within MPMX19_05541at 248.643 kb on - strand, within MPMX19_05541at 248.643 kb on - strand, within MPMX19_05541at 248.643 kb on - strand, within MPMX19_05541at 248.643 kb on - strand, within MPMX19_05541at 248.655 kb on + strandat 248.655 kb on + strandat 248.655 kb on + strandat 248.655 kb on + strandat 248.655 kb on + strandat 248.656 kb on - strandat 248.656 kb on - strandat 248.656 kb on - strandat 248.656 kb on - strandat 248.656 kb on - strandat 248.656 kb on - strandat 248.656 kb on - strandat 248.894 kb on + strand, within MPMX19_05542at 248.894 kb on + strand, within MPMX19_05542at 248.894 kb on + strand, within MPMX19_05542at 248.894 kb on + strand, within MPMX19_05542at 248.894 kb on + strand, within MPMX19_05542at 248.894 kb on + strand, within MPMX19_05542at 248.894 kb on + strand, within MPMX19_05542at 248.894 kb on + strand, within MPMX19_05542at 248.894 kb on + strand, within MPMX19_05542at 248.895 kb on - strand, within MPMX19_05542at 248.895 kb on - strand, within MPMX19_05542at 248.897 kb on + strand, within MPMX19_05542at 248.897 kb on + strand, within MPMX19_05542at 248.897 kb on + strand, within MPMX19_05542at 248.897 kb on + strand, within MPMX19_05542at 248.897 kb on + strand, within MPMX19_05542at 248.897 kb on + strand, within MPMX19_05542at 248.897 kb on + strand, within MPMX19_05542at 248.897 kb on + strand, within MPMX19_05542at 248.897 kb on + strand, within MPMX19_05542at 248.897 kb on + strand, within MPMX19_05542at 248.897 kb on + strand, within MPMX19_05542at 248.897 kb on + strand, within MPMX19_05542at 248.897 kb on + strand, within MPMX19_05542at 248.897 kb on + strand, within MPMX19_05542at 248.897 kb on + strand, within MPMX19_05542at 248.897 kb on + strand, within MPMX19_05542at 248.897 kb on + strand, within MPMX19_05542at 248.898 kb on - strand, within MPMX19_05542at 248.898 kb on - strand, within MPMX19_05542at 248.898 kb on - strand, within MPMX19_05542at 248.898 kb on - strand, within MPMX19_05542at 248.898 kb on - strand, within MPMX19_05542at 248.898 kb on - strand, within MPMX19_05542at 248.898 kb on - strand, within MPMX19_05542at 248.898 kb on - strand, within MPMX19_05542at 248.898 kb on - strand, within MPMX19_05542at 248.898 kb on - strand, within MPMX19_05542at 248.898 kb on - strand, within MPMX19_05542at 248.898 kb on - strand, within MPMX19_05542at 248.898 kb on - strand, within MPMX19_05542at 248.898 kb on - strand, within MPMX19_05542at 248.898 kb on - strand, within MPMX19_05542at 248.898 kb on - strand, within MPMX19_05542at 248.918 kb on + strand, within MPMX19_05542at 248.918 kb on + strand, within MPMX19_05542at 248.918 kb on + strand, within MPMX19_05542at 248.918 kb on + strand, within MPMX19_05542at 248.918 kb on + strand, within MPMX19_05542at 248.919 kb on - strand, within MPMX19_05542at 249.038 kb on + strand, within MPMX19_05542at 249.039 kb on - strand, within MPMX19_05542at 249.249 kb on + strandat 249.249 kb on + strandat 249.249 kb on + strandat 249.250 kb on - strandat 249.250 kb on - strandat 249.250 kb on - strandat 249.250 kb on - strandat 249.250 kb on - strandat 249.250 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
247,794 + MPMX19_05540 0.66 -0.5
247,794 + MPMX19_05540 0.66 -0.7
247,795 - MPMX19_05540 0.66 -0.3
247,922 + MPMX19_05540 0.77 +0.9
247,922 + MPMX19_05540 0.77 -1.1
247,923 - MPMX19_05540 0.77 -0.1
247,923 - MPMX19_05540 0.77 -0.9
247,923 - MPMX19_05540 0.77 +0.1
248,305 + MPMX19_05541 0.16 -1.1
248,305 + MPMX19_05541 0.16 +0.5
248,305 + MPMX19_05541 0.16 +0.5
248,305 + MPMX19_05541 0.16 -0.3
248,305 + MPMX19_05541 0.16 -0.1
248,306 - MPMX19_05541 0.16 -0.2
248,306 - MPMX19_05541 0.16 -0.9
248,575 + MPMX19_05541 0.73 -0.6
248,575 + MPMX19_05541 0.73 -1.1
248,575 + MPMX19_05541 0.73 -0.1
248,575 + MPMX19_05541 0.73 -0.2
248,575 + MPMX19_05541 0.73 -2.4
248,575 + MPMX19_05541 0.73 -0.0
248,575 + MPMX19_05541 0.73 -0.7
248,575 + MPMX19_05541 0.73 -0.3
248,575 + MPMX19_05541 0.73 -1.0
248,575 + MPMX19_05541 0.73 -1.0
248,575 + MPMX19_05541 0.73 -2.1
248,575 + MPMX19_05541 0.73 -2.1
248,575 + MPMX19_05541 0.73 +0.5
248,575 + MPMX19_05541 0.73 -2.0
248,575 + MPMX19_05541 0.73 -0.7
248,575 + MPMX19_05541 0.73 -0.2
248,575 + MPMX19_05541 0.73 -0.5
248,575 + MPMX19_05541 0.73 -1.5
248,575 + MPMX19_05541 0.73 -0.7
248,576 - MPMX19_05541 0.74 -0.5
248,576 - MPMX19_05541 0.74 +0.2
248,576 - MPMX19_05541 0.74 -1.3
248,576 - MPMX19_05541 0.74 -2.4
248,576 - MPMX19_05541 0.74 -0.1
248,576 - MPMX19_05541 0.74 +0.3
248,576 - MPMX19_05541 0.74 -1.2
248,576 - MPMX19_05541 0.74 +0.9
248,576 - MPMX19_05541 0.74 -1.6
248,576 - MPMX19_05541 0.74 -0.2
248,576 - MPMX19_05541 0.74 -0.2
248,576 - MPMX19_05541 0.74 -1.1
248,576 - MPMX19_05541 0.74 -0.3
248,576 - MPMX19_05541 0.74 -1.9
248,576 - MPMX19_05541 0.74 -2.2
248,593 + MPMX19_05541 0.77 -1.1
248,593 + MPMX19_05541 0.77 -0.7
248,593 + MPMX19_05541 0.77 -1.8
248,593 + MPMX19_05541 0.77 -0.8
248,594 - MPMX19_05541 0.77 -1.2
248,638 + MPMX19_05541 0.87 -0.6
248,638 + MPMX19_05541 0.87 -0.5
248,638 + MPMX19_05541 0.87 +0.5
248,638 + MPMX19_05541 0.87 -0.6
248,638 + MPMX19_05541 0.87 -0.5
248,638 + MPMX19_05541 0.87 +0.1
248,638 + MPMX19_05541 0.87 -1.1
248,638 + MPMX19_05541 0.87 +0.4
248,638 + MPMX19_05541 0.87 -0.1
248,638 + MPMX19_05541 0.87 -0.2
248,638 + MPMX19_05541 0.87 -1.5
248,638 + MPMX19_05541 0.87 +0.1
248,638 + MPMX19_05541 0.87 -0.1
248,638 + MPMX19_05541 0.87 +0.7
248,638 + MPMX19_05541 0.87 -2.0
248,638 + MPMX19_05541 0.87 -0.9
248,638 + MPMX19_05541 0.87 -1.4
248,638 + MPMX19_05541 0.87 -0.6
248,638 + MPMX19_05541 0.87 -1.0
248,638 + MPMX19_05541 0.87 +0.6
248,639 - MPMX19_05541 0.87 +0.2
248,639 - MPMX19_05541 0.87 -0.2
248,639 - MPMX19_05541 0.87 -0.4
248,639 - MPMX19_05541 0.87 -0.1
248,639 - MPMX19_05541 0.87 -1.3
248,639 - MPMX19_05541 0.87 +0.2
248,639 - MPMX19_05541 0.87 -2.5
248,639 - MPMX19_05541 0.87 -0.5
248,639 - MPMX19_05541 0.87 +1.1
248,639 - MPMX19_05541 0.87 -0.8
248,639 - MPMX19_05541 0.87 -1.1
248,639 - MPMX19_05541 0.87 -1.2
248,639 - MPMX19_05541 0.87 +0.4
248,639 - MPMX19_05541 0.87 -0.1
248,639 - MPMX19_05541 0.87 +0.4
248,639 - MPMX19_05541 0.87 -1.1
248,639 - MPMX19_05541 0.87 -1.7
248,639 - MPMX19_05541 0.87 +0.0
248,639 - MPMX19_05541 0.87 -1.0
248,639 - MPMX19_05541 0.87 -1.2
248,642 + MPMX19_05541 0.88 -0.6
248,642 + MPMX19_05541 0.88 -1.3
248,642 + MPMX19_05541 0.88 -1.2
248,642 + MPMX19_05541 0.88 -0.7
248,642 + MPMX19_05541 0.88 -1.1
248,643 - MPMX19_05541 0.88 -1.8
248,643 - MPMX19_05541 0.88 -1.5
248,643 - MPMX19_05541 0.88 -2.4
248,643 - MPMX19_05541 0.88 +0.5
248,643 - MPMX19_05541 0.88 -2.3
248,655 + -1.7
248,655 + +0.4
248,655 + +0.1
248,655 + -0.9
248,655 + -0.2
248,656 - -0.5
248,656 - -1.6
248,656 - -0.6
248,656 - -0.4
248,656 - -0.4
248,656 - +0.7
248,656 - -1.1
248,894 + MPMX19_05542 0.37 -1.1
248,894 + MPMX19_05542 0.37 +0.1
248,894 + MPMX19_05542 0.37 -1.6
248,894 + MPMX19_05542 0.37 -0.7
248,894 + MPMX19_05542 0.37 -0.5
248,894 + MPMX19_05542 0.37 +2.1
248,894 + MPMX19_05542 0.37 -0.9
248,894 + MPMX19_05542 0.37 +0.1
248,894 + MPMX19_05542 0.37 +0.8
248,895 - MPMX19_05542 0.37 -1.0
248,895 - MPMX19_05542 0.37 -0.2
248,897 + MPMX19_05542 0.37 -0.2
248,897 + MPMX19_05542 0.37 -0.7
248,897 + MPMX19_05542 0.37 -0.3
248,897 + MPMX19_05542 0.37 +0.2
248,897 + MPMX19_05542 0.37 -1.2
248,897 + MPMX19_05542 0.37 -0.9
248,897 + MPMX19_05542 0.37 -1.6
248,897 + MPMX19_05542 0.37 -1.6
248,897 + MPMX19_05542 0.37 +0.1
248,897 + MPMX19_05542 0.37 +0.7
248,897 + MPMX19_05542 0.37 -0.1
248,897 + MPMX19_05542 0.37 -2.1
248,897 + MPMX19_05542 0.37 -0.6
248,897 + MPMX19_05542 0.37 -0.3
248,897 + MPMX19_05542 0.37 -0.4
248,897 + MPMX19_05542 0.37 -0.3
248,897 + MPMX19_05542 0.37 -0.9
248,898 - MPMX19_05542 0.37 +0.0
248,898 - MPMX19_05542 0.37 -0.8
248,898 - MPMX19_05542 0.37 -0.1
248,898 - MPMX19_05542 0.37 +0.4
248,898 - MPMX19_05542 0.37 +0.1
248,898 - MPMX19_05542 0.37 -1.0
248,898 - MPMX19_05542 0.37 -2.1
248,898 - MPMX19_05542 0.37 +0.1
248,898 - MPMX19_05542 0.37 -0.6
248,898 - MPMX19_05542 0.37 +1.8
248,898 - MPMX19_05542 0.37 -1.5
248,898 - MPMX19_05542 0.37 -0.8
248,898 - MPMX19_05542 0.37 -0.7
248,898 - MPMX19_05542 0.37 -1.3
248,898 - MPMX19_05542 0.37 -0.8
248,898 - MPMX19_05542 0.37 -2.1
248,918 + MPMX19_05542 0.42 -0.9
248,918 + MPMX19_05542 0.42 +0.1
248,918 + MPMX19_05542 0.42 -1.2
248,918 + MPMX19_05542 0.42 -2.1
248,918 + MPMX19_05542 0.42 -1.1
248,919 - MPMX19_05542 0.42 -0.2
249,038 + MPMX19_05542 0.66 -0.5
249,039 - MPMX19_05542 0.66 +0.5
249,249 + -1.8
249,249 + +1.0
249,249 + -0.5
249,250 - +0.9
249,250 - -1.2
249,250 - -2.0
249,250 - -0.9
249,250 - +0.5
249,250 - -0.8

Or see this region's nucleotide sequence