Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05538 and MPMX19_05539 are separated by 111 nucleotides MPMX19_05539 and MPMX19_05540 are separated by 284 nucleotides
MPMX19_05538: MPMX19_05538 - hypothetical protein, at 243,051 to 244,229
_05538
MPMX19_05539: MPMX19_05539 - Sensor histidine kinase RcsC, at 244,341 to 246,692
_05539
MPMX19_05540: MPMX19_05540 - hypothetical protein, at 246,977 to 248,209
_05540
Position (kb) 244
245
246
247 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 243.412 kb on + strand, within MPMX19_05538 at 243.413 kb on - strand, within MPMX19_05538 at 243.544 kb on + strand, within MPMX19_05538 at 243.545 kb on - strand, within MPMX19_05538 at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.327 kb on - strand at 244.327 kb on - strand at 244.327 kb on - strand at 244.327 kb on - strand at 244.327 kb on - strand at 244.327 kb on - strand at 244.327 kb on - strand at 244.327 kb on - strand at 244.327 kb on - strand at 244.327 kb on - strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.672 kb on + strand, within MPMX19_05539 at 244.672 kb on + strand, within MPMX19_05539 at 244.672 kb on + strand, within MPMX19_05539 at 244.672 kb on + strand, within MPMX19_05539 at 244.672 kb on + strand, within MPMX19_05539 at 244.673 kb on - strand, within MPMX19_05539 at 244.673 kb on - strand, within MPMX19_05539 at 244.673 kb on - strand, within MPMX19_05539 at 244.673 kb on - strand, within MPMX19_05539 at 245.438 kb on - strand, within MPMX19_05539 at 245.438 kb on - strand, within MPMX19_05539 at 245.984 kb on + strand, within MPMX19_05539 at 245.984 kb on + strand, within MPMX19_05539 at 245.985 kb on - strand, within MPMX19_05539 at 246.410 kb on + strand, within MPMX19_05539 at 246.410 kb on + strand, within MPMX19_05539 at 246.410 kb on + strand, within MPMX19_05539 at 246.411 kb on - strand, within MPMX19_05539 at 246.411 kb on - strand, within MPMX19_05539 at 246.411 kb on - strand, within MPMX19_05539 at 246.411 kb on - strand, within MPMX19_05539 at 246.411 kb on - strand, within MPMX19_05539 at 246.577 kb on + strand at 246.577 kb on + strand at 246.577 kb on + strand at 246.577 kb on + strand at 246.578 kb on - strand at 246.578 kb on - strand at 246.578 kb on - strand at 246.578 kb on - strand at 246.723 kb on + strand at 246.723 kb on + strand at 246.724 kb on - strand at 246.738 kb on + strand at 246.738 kb on + strand at 246.738 kb on + strand at 246.739 kb on - strand at 246.739 kb on - strand at 246.739 kb on - strand at 246.739 kb on - strand at 246.777 kb on - strand at 246.777 kb on - strand at 246.829 kb on + strand at 246.839 kb on - strand at 246.997 kb on + strand at 247.175 kb on + strand, within MPMX19_05540 at 247.175 kb on + strand, within MPMX19_05540 at 247.175 kb on + strand, within MPMX19_05540 at 247.175 kb on + strand, within MPMX19_05540 at 247.175 kb on + strand, within MPMX19_05540 at 247.175 kb on + strand, within MPMX19_05540 at 247.175 kb on + strand, within MPMX19_05540 at 247.175 kb on + strand, within MPMX19_05540 at 247.175 kb on + strand, within MPMX19_05540 at 247.175 kb on + strand, within MPMX19_05540 at 247.175 kb on + strand, within MPMX19_05540 at 247.175 kb on + strand, within MPMX19_05540 at 247.175 kb on + strand, within MPMX19_05540 at 247.175 kb on + strand, within MPMX19_05540 at 247.175 kb on + strand, within MPMX19_05540 at 247.175 kb on + strand, within MPMX19_05540 at 247.175 kb on + strand, within MPMX19_05540 at 247.175 kb on + strand, within MPMX19_05540 at 247.175 kb on + strand, within MPMX19_05540 at 247.175 kb on + strand, within MPMX19_05540 at 247.176 kb on - strand, within MPMX19_05540 at 247.176 kb on - strand, within MPMX19_05540 at 247.176 kb on - strand, within MPMX19_05540 at 247.176 kb on - strand, within MPMX19_05540 at 247.176 kb on - strand, within MPMX19_05540 at 247.176 kb on - strand, within MPMX19_05540 at 247.176 kb on - strand, within MPMX19_05540 at 247.176 kb on - strand, within MPMX19_05540 at 247.176 kb on - strand, within MPMX19_05540 at 247.176 kb on - strand, within MPMX19_05540 at 247.176 kb on - strand, within MPMX19_05540 at 247.176 kb on - strand, within MPMX19_05540 at 247.176 kb on - strand, within MPMX19_05540 at 247.176 kb on - strand, within MPMX19_05540 at 247.212 kb on + strand, within MPMX19_05540 at 247.212 kb on + strand, within MPMX19_05540 at 247.213 kb on - strand, within MPMX19_05540 at 247.213 kb on - strand, within MPMX19_05540 at 247.358 kb on + strand, within MPMX19_05540 at 247.358 kb on + strand, within MPMX19_05540 at 247.358 kb on + strand, within MPMX19_05540 at 247.358 kb on + strand, within MPMX19_05540 at 247.358 kb on + strand, within MPMX19_05540 at 247.358 kb on + strand, within MPMX19_05540 at 247.358 kb on + strand, within MPMX19_05540 at 247.358 kb on + strand, within MPMX19_05540 at 247.358 kb on + strand, within MPMX19_05540 at 247.359 kb on - strand, within MPMX19_05540 at 247.359 kb on - strand, within MPMX19_05540 at 247.359 kb on - strand, within MPMX19_05540 at 247.359 kb on - strand, within MPMX19_05540 at 247.359 kb on - strand, within MPMX19_05540 at 247.359 kb on - strand, within MPMX19_05540 at 247.359 kb on - strand, within MPMX19_05540 at 247.422 kb on - strand, within MPMX19_05540 at 247.422 kb on - strand, within MPMX19_05540 at 247.422 kb on - strand, within MPMX19_05540 at 247.422 kb on - strand, within MPMX19_05540 at 247.478 kb on + strand, within MPMX19_05540 at 247.478 kb on + strand, within MPMX19_05540 at 247.478 kb on + strand, within MPMX19_05540 at 247.479 kb on - strand, within MPMX19_05540 at 247.479 kb on - strand, within MPMX19_05540 at 247.479 kb on - strand, within MPMX19_05540 at 247.490 kb on + strand, within MPMX19_05540 at 247.490 kb on + strand, within MPMX19_05540 at 247.490 kb on + strand, within MPMX19_05540 at 247.490 kb on + strand, within MPMX19_05540 at 247.490 kb on + strand, within MPMX19_05540 at 247.490 kb on + strand, within MPMX19_05540 at 247.490 kb on + strand, within MPMX19_05540 at 247.490 kb on + strand, within MPMX19_05540 at 247.490 kb on + strand, within MPMX19_05540 at 247.490 kb on + strand, within MPMX19_05540 at 247.490 kb on + strand, within MPMX19_05540 at 247.491 kb on - strand, within MPMX19_05540 at 247.491 kb on - strand, within MPMX19_05540 at 247.491 kb on - strand, within MPMX19_05540 at 247.491 kb on - strand, within MPMX19_05540 at 247.491 kb on - strand, within MPMX19_05540 at 247.491 kb on - strand, within MPMX19_05540 at 247.491 kb on - strand, within MPMX19_05540 at 247.491 kb on - strand, within MPMX19_05540 at 247.491 kb on - strand, within MPMX19_05540 at 247.491 kb on - strand, within MPMX19_05540 at 247.491 kb on - strand, within MPMX19_05540 at 247.491 kb on - strand, within MPMX19_05540 at 247.491 kb on - strand, within MPMX19_05540 at 247.491 kb on - strand, within MPMX19_05540 at 247.491 kb on - strand, within MPMX19_05540 at 247.574 kb on + strand, within MPMX19_05540 at 247.574 kb on + strand, within MPMX19_05540 at 247.574 kb on + strand, within MPMX19_05540 at 247.574 kb on + strand, within MPMX19_05540 at 247.574 kb on + strand, within MPMX19_05540 at 247.574 kb on + strand, within MPMX19_05540 at 247.574 kb on + strand, within MPMX19_05540 at 247.574 kb on + strand, within MPMX19_05540 at 247.574 kb on + strand, within MPMX19_05540 at 247.574 kb on + strand, within MPMX19_05540 at 247.574 kb on + strand, within MPMX19_05540 at 247.574 kb on + strand, within MPMX19_05540 at 247.574 kb on + strand, within MPMX19_05540 at 247.574 kb on + strand, within MPMX19_05540 at 247.574 kb on + strand, within MPMX19_05540 at 247.575 kb on - strand, within MPMX19_05540 at 247.575 kb on - strand, within MPMX19_05540 at 247.575 kb on - strand, within MPMX19_05540 at 247.575 kb on - strand, within MPMX19_05540 at 247.575 kb on - strand, within MPMX19_05540 at 247.575 kb on - strand, within MPMX19_05540 at 247.575 kb on - strand, within MPMX19_05540 at 247.575 kb on - strand, within MPMX19_05540 at 247.575 kb on - strand, within MPMX19_05540 at 247.575 kb on - strand, within MPMX19_05540 at 247.575 kb on - strand, within MPMX19_05540 at 247.575 kb on - strand, within MPMX19_05540 at 247.575 kb on - strand, within MPMX19_05540 at 247.575 kb on - strand, within MPMX19_05540 at 247.575 kb on - strand, within MPMX19_05540 at 247.679 kb on + strand, within MPMX19_05540 at 247.679 kb on + strand, within MPMX19_05540 at 247.679 kb on + strand, within MPMX19_05540 at 247.679 kb on + strand, within MPMX19_05540 at 247.679 kb on + strand, within MPMX19_05540 at 247.680 kb on - strand, within MPMX19_05540 at 247.680 kb on - strand, within MPMX19_05540 at 247.680 kb on - strand, within MPMX19_05540 at 247.680 kb on - strand, within MPMX19_05540
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 243,412 + MPMX19_05538 0.31 +0.1 243,413 - MPMX19_05538 0.31 -0.7 243,544 + MPMX19_05538 0.42 -0.6 243,545 - MPMX19_05538 0.42 +0.8 244,326 + +0.5 244,326 + -0.5 244,326 + -2.1 244,326 + +0.1 244,326 + -0.2 244,326 + -1.1 244,326 + +2.3 244,326 + -2.1 244,326 + -0.2 244,326 + +0.3 244,326 + -1.0 244,326 + -0.7 244,326 + +0.5 244,326 + -0.1 244,326 + -1.7 244,326 + -1.2 244,326 + -0.7 244,326 + -0.3 244,326 + -1.1 244,327 - -1.1 244,327 - -0.3 244,327 - -0.1 244,327 - -0.2 244,327 - -0.7 244,327 - -1.2 244,327 - +1.5 244,327 - -0.3 244,327 - -1.1 244,327 - +0.1 244,328 + -1.2 244,328 + -1.2 244,328 + -0.7 244,328 + -0.7 244,328 + +1.4 244,328 + -2.0 244,328 + -0.7 244,328 + +4.4 244,328 + -0.1 244,328 + -0.8 244,328 + +0.9 244,328 + -0.3 244,328 + -2.1 244,328 + -0.5 244,328 + +0.3 244,328 + -2.3 244,328 + +0.3 244,328 + -0.7 244,329 - +0.1 244,329 - +2.1 244,329 - -1.2 244,329 - -1.5 244,329 - -0.2 244,329 - -1.2 244,329 - -2.7 244,329 - -1.6 244,329 - -1.3 244,329 - +0.0 244,329 - +0.5 244,329 - -1.6 244,329 - +0.1 244,329 - +0.0 244,329 - -1.1 244,329 - +0.4 244,329 - -0.2 244,672 + MPMX19_05539 0.14 +0.4 244,672 + MPMX19_05539 0.14 -1.6 244,672 + MPMX19_05539 0.14 -1.1 244,672 + MPMX19_05539 0.14 -0.9 244,672 + MPMX19_05539 0.14 -0.6 244,673 - MPMX19_05539 0.14 -0.7 244,673 - MPMX19_05539 0.14 -2.7 244,673 - MPMX19_05539 0.14 -0.4 244,673 - MPMX19_05539 0.14 -0.1 245,438 - MPMX19_05539 0.47 -0.7 245,438 - MPMX19_05539 0.47 -0.7 245,984 + MPMX19_05539 0.70 -1.5 245,984 + MPMX19_05539 0.70 -1.2 245,985 - MPMX19_05539 0.70 +0.1 246,410 + MPMX19_05539 0.88 -0.7 246,410 + MPMX19_05539 0.88 -0.1 246,410 + MPMX19_05539 0.88 -1.5 246,411 - MPMX19_05539 0.88 +0.1 246,411 - MPMX19_05539 0.88 +0.1 246,411 - MPMX19_05539 0.88 -2.1 246,411 - MPMX19_05539 0.88 +0.8 246,411 - MPMX19_05539 0.88 +0.5 246,577 + +0.0 246,577 + +0.2 246,577 + -0.9 246,577 + -0.3 246,578 - -0.2 246,578 - -0.5 246,578 - +0.5 246,578 - +1.0 246,723 + -1.6 246,723 + -0.8 246,724 - -2.7 246,738 + -0.7 246,738 + -0.5 246,738 + -1.5 246,739 - -0.4 246,739 - -2.0 246,739 - -0.2 246,739 - -1.1 246,777 - -0.7 246,777 - +0.7 246,829 + -1.3 246,839 - -0.4 246,997 + -0.5 247,175 + MPMX19_05540 0.16 -3.6 247,175 + MPMX19_05540 0.16 -0.7 247,175 + MPMX19_05540 0.16 -1.1 247,175 + MPMX19_05540 0.16 -1.3 247,175 + MPMX19_05540 0.16 +0.8 247,175 + MPMX19_05540 0.16 -0.9 247,175 + MPMX19_05540 0.16 +0.5 247,175 + MPMX19_05540 0.16 -0.5 247,175 + MPMX19_05540 0.16 -1.2 247,175 + MPMX19_05540 0.16 -0.2 247,175 + MPMX19_05540 0.16 -1.1 247,175 + MPMX19_05540 0.16 -1.1 247,175 + MPMX19_05540 0.16 -0.9 247,175 + MPMX19_05540 0.16 -0.5 247,175 + MPMX19_05540 0.16 -0.5 247,175 + MPMX19_05540 0.16 +1.2 247,175 + MPMX19_05540 0.16 -0.3 247,175 + MPMX19_05540 0.16 -0.2 247,175 + MPMX19_05540 0.16 -1.5 247,175 + MPMX19_05540 0.16 -0.1 247,176 - MPMX19_05540 0.16 -0.1 247,176 - MPMX19_05540 0.16 -1.5 247,176 - MPMX19_05540 0.16 +0.7 247,176 - MPMX19_05540 0.16 -0.9 247,176 - MPMX19_05540 0.16 -1.1 247,176 - MPMX19_05540 0.16 -0.3 247,176 - MPMX19_05540 0.16 +0.1 247,176 - MPMX19_05540 0.16 -0.1 247,176 - MPMX19_05540 0.16 -2.3 247,176 - MPMX19_05540 0.16 -0.3 247,176 - MPMX19_05540 0.16 -0.2 247,176 - MPMX19_05540 0.16 -0.7 247,176 - MPMX19_05540 0.16 -0.2 247,176 - MPMX19_05540 0.16 -0.3 247,212 + MPMX19_05540 0.19 -1.8 247,212 + MPMX19_05540 0.19 -1.2 247,213 - MPMX19_05540 0.19 +0.2 247,213 - MPMX19_05540 0.19 +0.7 247,358 + MPMX19_05540 0.31 -0.8 247,358 + MPMX19_05540 0.31 +0.1 247,358 + MPMX19_05540 0.31 -0.6 247,358 + MPMX19_05540 0.31 +0.2 247,358 + MPMX19_05540 0.31 +0.1 247,358 + MPMX19_05540 0.31 -1.1 247,358 + MPMX19_05540 0.31 -0.2 247,358 + MPMX19_05540 0.31 -1.0 247,358 + MPMX19_05540 0.31 -0.2 247,359 - MPMX19_05540 0.31 -0.6 247,359 - MPMX19_05540 0.31 -0.5 247,359 - MPMX19_05540 0.31 -0.5 247,359 - MPMX19_05540 0.31 +0.5 247,359 - MPMX19_05540 0.31 -0.9 247,359 - MPMX19_05540 0.31 +0.5 247,359 - MPMX19_05540 0.31 -1.0 247,422 - MPMX19_05540 0.36 +0.3 247,422 - MPMX19_05540 0.36 -1.2 247,422 - MPMX19_05540 0.36 -1.3 247,422 - MPMX19_05540 0.36 -1.1 247,478 + MPMX19_05540 0.41 -1.1 247,478 + MPMX19_05540 0.41 -0.1 247,478 + MPMX19_05540 0.41 -1.7 247,479 - MPMX19_05540 0.41 +2.4 247,479 - MPMX19_05540 0.41 +0.7 247,479 - MPMX19_05540 0.41 +1.5 247,490 + MPMX19_05540 0.42 +0.2 247,490 + MPMX19_05540 0.42 +0.7 247,490 + MPMX19_05540 0.42 -2.5 247,490 + MPMX19_05540 0.42 -0.9 247,490 + MPMX19_05540 0.42 -0.2 247,490 + MPMX19_05540 0.42 -0.5 247,490 + MPMX19_05540 0.42 -1.6 247,490 + MPMX19_05540 0.42 -1.4 247,490 + MPMX19_05540 0.42 +0.0 247,490 + MPMX19_05540 0.42 -0.1 247,490 + MPMX19_05540 0.42 -1.0 247,491 - MPMX19_05540 0.42 +0.3 247,491 - MPMX19_05540 0.42 -1.4 247,491 - MPMX19_05540 0.42 -0.5 247,491 - MPMX19_05540 0.42 -0.1 247,491 - MPMX19_05540 0.42 -0.5 247,491 - MPMX19_05540 0.42 -0.3 247,491 - MPMX19_05540 0.42 -0.1 247,491 - MPMX19_05540 0.42 -0.1 247,491 - MPMX19_05540 0.42 +0.1 247,491 - MPMX19_05540 0.42 -0.6 247,491 - MPMX19_05540 0.42 -1.3 247,491 - MPMX19_05540 0.42 -0.4 247,491 - MPMX19_05540 0.42 -0.2 247,491 - MPMX19_05540 0.42 -0.7 247,491 - MPMX19_05540 0.42 +0.0 247,574 + MPMX19_05540 0.48 -0.5 247,574 + MPMX19_05540 0.48 +0.4 247,574 + MPMX19_05540 0.48 -0.6 247,574 + MPMX19_05540 0.48 -1.1 247,574 + MPMX19_05540 0.48 -0.7 247,574 + MPMX19_05540 0.48 -0.3 247,574 + MPMX19_05540 0.48 +0.0 247,574 + MPMX19_05540 0.48 -0.8 247,574 + MPMX19_05540 0.48 +0.1 247,574 + MPMX19_05540 0.48 -0.4 247,574 + MPMX19_05540 0.48 -0.1 247,574 + MPMX19_05540 0.48 -0.5 247,574 + MPMX19_05540 0.48 -0.5 247,574 + MPMX19_05540 0.48 -0.2 247,574 + MPMX19_05540 0.48 -0.7 247,575 - MPMX19_05540 0.48 -1.3 247,575 - MPMX19_05540 0.48 +0.1 247,575 - MPMX19_05540 0.48 -0.9 247,575 - MPMX19_05540 0.48 +0.5 247,575 - MPMX19_05540 0.48 -0.5 247,575 - MPMX19_05540 0.48 -1.0 247,575 - MPMX19_05540 0.48 +0.6 247,575 - MPMX19_05540 0.48 -1.7 247,575 - MPMX19_05540 0.48 -0.2 247,575 - MPMX19_05540 0.48 +0.5 247,575 - MPMX19_05540 0.48 +0.6 247,575 - MPMX19_05540 0.48 -1.7 247,575 - MPMX19_05540 0.48 +1.5 247,575 - MPMX19_05540 0.48 -0.5 247,575 - MPMX19_05540 0.48 -1.2 247,679 + MPMX19_05540 0.57 -0.5 247,679 + MPMX19_05540 0.57 -1.3 247,679 + MPMX19_05540 0.57 -0.7 247,679 + MPMX19_05540 0.57 -1.0 247,679 + MPMX19_05540 0.57 -1.1 247,680 - MPMX19_05540 0.57 -0.7 247,680 - MPMX19_05540 0.57 -0.5 247,680 - MPMX19_05540 0.57 -0.3 247,680 - MPMX19_05540 0.57 -0.2
Or see this region's nucleotide sequence