Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05512 and MPMX19_05513 are separated by 115 nucleotides MPMX19_05513 and MPMX19_05514 are separated by 137 nucleotides
MPMX19_05512: MPMX19_05512 - Homoserine/homoserine lactone efflux protein, at 217,266 to 217,892
_05512
MPMX19_05513: MPMX19_05513 - 3'3'-cGAMP-specific phosphodiesterase 2, at 218,008 to 219,573
_05513
MPMX19_05514: MPMX19_05514 - 4-hydroxy-tetrahydrodipicolinate reductase, at 219,711 to 220,508
_05514
Position (kb) 218
219
220 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 217.062 kb on + strand at 217.062 kb on + strand at 217.062 kb on + strand at 217.062 kb on + strand at 217.062 kb on + strand at 217.062 kb on + strand at 217.063 kb on - strand at 217.063 kb on - strand at 217.063 kb on - strand at 217.063 kb on - strand at 217.063 kb on - strand at 217.077 kb on + strand at 217.243 kb on + strand at 217.244 kb on - strand at 217.244 kb on - strand at 217.249 kb on + strand at 217.249 kb on + strand at 217.249 kb on + strand at 217.250 kb on - strand at 217.250 kb on - strand at 217.250 kb on - strand at 217.250 kb on - strand at 217.250 kb on - strand at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.509 kb on + strand, within MPMX19_05512 at 217.509 kb on + strand, within MPMX19_05512 at 217.509 kb on + strand, within MPMX19_05512 at 217.509 kb on + strand, within MPMX19_05512 at 217.510 kb on - strand, within MPMX19_05512 at 217.510 kb on - strand, within MPMX19_05512 at 217.510 kb on - strand, within MPMX19_05512 at 217.510 kb on - strand, within MPMX19_05512 at 217.510 kb on - strand, within MPMX19_05512 at 217.518 kb on + strand, within MPMX19_05512 at 217.518 kb on + strand, within MPMX19_05512 at 217.519 kb on - strand, within MPMX19_05512 at 217.519 kb on - strand, within MPMX19_05512 at 217.519 kb on - strand, within MPMX19_05512 at 217.519 kb on - strand, within MPMX19_05512 at 217.519 kb on - strand, within MPMX19_05512 at 217.519 kb on - strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.761 kb on + strand, within MPMX19_05512 at 217.762 kb on - strand, within MPMX19_05512 at 217.762 kb on - strand, within MPMX19_05512 at 217.762 kb on - strand, within MPMX19_05512 at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.915 kb on - strand at 217.915 kb on - strand at 217.915 kb on - strand at 217.915 kb on - strand at 217.915 kb on - strand at 217.916 kb on + strand at 217.916 kb on + strand at 217.916 kb on + strand at 217.916 kb on + strand at 217.916 kb on + strand at 217.916 kb on + strand at 217.916 kb on + strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 218.236 kb on + strand, within MPMX19_05513 at 218.236 kb on + strand, within MPMX19_05513 at 218.237 kb on - strand, within MPMX19_05513 at 218.237 kb on - strand, within MPMX19_05513 at 218.237 kb on - strand, within MPMX19_05513 at 218.237 kb on - strand, within MPMX19_05513 at 218.237 kb on - strand, within MPMX19_05513 at 218.237 kb on - strand, within MPMX19_05513 at 218.237 kb on - strand, within MPMX19_05513 at 218.452 kb on + strand, within MPMX19_05513 at 218.452 kb on + strand, within MPMX19_05513 at 218.452 kb on + strand, within MPMX19_05513 at 218.452 kb on + strand, within MPMX19_05513 at 218.452 kb on + strand, within MPMX19_05513 at 218.452 kb on + strand, within MPMX19_05513 at 218.453 kb on - strand, within MPMX19_05513 at 218.453 kb on - strand, within MPMX19_05513 at 218.453 kb on - strand, within MPMX19_05513 at 218.488 kb on + strand, within MPMX19_05513 at 218.488 kb on + strand, within MPMX19_05513 at 218.488 kb on + strand, within MPMX19_05513 at 218.489 kb on - strand, within MPMX19_05513 at 218.489 kb on - strand, within MPMX19_05513 at 218.489 kb on - strand, within MPMX19_05513 at 218.518 kb on + strand, within MPMX19_05513 at 218.518 kb on + strand, within MPMX19_05513 at 218.518 kb on + strand, within MPMX19_05513 at 218.518 kb on + strand, within MPMX19_05513 at 218.519 kb on - strand, within MPMX19_05513 at 218.519 kb on - strand, within MPMX19_05513 at 218.947 kb on + strand, within MPMX19_05513 at 218.947 kb on + strand, within MPMX19_05513 at 218.947 kb on + strand, within MPMX19_05513 at 218.948 kb on - strand, within MPMX19_05513 at 218.948 kb on - strand, within MPMX19_05513 at 219.007 kb on + strand, within MPMX19_05513 at 219.008 kb on - strand, within MPMX19_05513 at 219.008 kb on - strand, within MPMX19_05513 at 219.008 kb on - strand, within MPMX19_05513 at 219.008 kb on - strand, within MPMX19_05513 at 219.008 kb on - strand, within MPMX19_05513 at 219.295 kb on + strand, within MPMX19_05513 at 219.295 kb on + strand, within MPMX19_05513 at 219.295 kb on + strand, within MPMX19_05513 at 219.295 kb on + strand, within MPMX19_05513 at 219.296 kb on - strand, within MPMX19_05513 at 219.296 kb on - strand, within MPMX19_05513 at 219.296 kb on - strand, within MPMX19_05513 at 219.296 kb on - strand, within MPMX19_05513 at 219.296 kb on - strand, within MPMX19_05513 at 219.296 kb on - strand, within MPMX19_05513 at 219.296 kb on - strand, within MPMX19_05513 at 219.296 kb on - strand, within MPMX19_05513 at 219.296 kb on - strand, within MPMX19_05513 at 219.448 kb on + strand at 219.448 kb on + strand at 219.448 kb on + strand at 219.448 kb on + strand at 219.448 kb on + strand at 219.448 kb on + strand at 219.449 kb on - strand at 219.449 kb on - strand at 219.449 kb on - strand at 219.449 kb on - strand at 219.449 kb on - strand at 219.449 kb on - strand at 219.571 kb on + strand at 219.571 kb on + strand at 219.571 kb on + strand at 219.571 kb on + strand at 219.571 kb on + strand at 219.571 kb on + strand at 219.571 kb on + strand at 219.571 kb on + strand at 219.571 kb on + strand at 219.571 kb on + strand at 219.571 kb on + strand at 219.572 kb on - strand at 219.572 kb on - strand at 219.572 kb on - strand at 219.572 kb on - strand at 219.572 kb on - strand at 219.572 kb on - strand at 219.572 kb on - strand at 219.572 kb on - strand at 219.596 kb on + strand at 219.596 kb on + strand at 219.597 kb on - strand at 219.613 kb on + strand at 219.613 kb on + strand at 219.614 kb on - strand at 219.614 kb on - strand at 219.614 kb on - strand at 219.696 kb on + strand at 219.696 kb on + strand at 219.696 kb on + strand at 220.568 kb on - strand at 220.568 kb on - strand at 220.568 kb on - strand at 220.568 kb on - strand at 220.568 kb on - strand at 220.568 kb on - strand at 220.568 kb on - strand at 220.568 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 217,062 + -1.2 217,062 + +0.5 217,062 + -1.9 217,062 + -0.9 217,062 + -1.0 217,062 + -0.2 217,063 - -0.2 217,063 - -1.8 217,063 - +0.7 217,063 - -2.9 217,063 - -0.8 217,077 + -0.8 217,243 + -0.1 217,244 - +0.5 217,244 - -0.9 217,249 + -1.2 217,249 + -0.1 217,249 + -0.2 217,250 - +1.2 217,250 - +2.7 217,250 - +0.3 217,250 - -1.8 217,250 - -0.4 217,353 + MPMX19_05512 0.14 -1.0 217,353 + MPMX19_05512 0.14 +1.8 217,353 + MPMX19_05512 0.14 -1.9 217,353 + MPMX19_05512 0.14 -0.2 217,353 + MPMX19_05512 0.14 -1.6 217,353 + MPMX19_05512 0.14 +0.3 217,353 + MPMX19_05512 0.14 +0.3 217,353 + MPMX19_05512 0.14 -0.5 217,353 + MPMX19_05512 0.14 -0.7 217,353 + MPMX19_05512 0.14 -1.7 217,353 + MPMX19_05512 0.14 -0.9 217,353 + MPMX19_05512 0.14 -1.6 217,353 + MPMX19_05512 0.14 +0.8 217,353 + MPMX19_05512 0.14 -1.3 217,354 - MPMX19_05512 0.14 -0.2 217,354 - MPMX19_05512 0.14 +0.4 217,354 - MPMX19_05512 0.14 -0.8 217,354 - MPMX19_05512 0.14 -0.6 217,354 - MPMX19_05512 0.14 -1.1 217,354 - MPMX19_05512 0.14 -0.7 217,354 - MPMX19_05512 0.14 -1.4 217,354 - MPMX19_05512 0.14 -1.5 217,354 - MPMX19_05512 0.14 -0.3 217,354 - MPMX19_05512 0.14 -0.9 217,354 - MPMX19_05512 0.14 -0.3 217,354 - MPMX19_05512 0.14 -0.3 217,354 - MPMX19_05512 0.14 -0.4 217,354 - MPMX19_05512 0.14 +0.8 217,354 - MPMX19_05512 0.14 -1.6 217,509 + MPMX19_05512 0.39 -0.6 217,509 + MPMX19_05512 0.39 -0.2 217,509 + MPMX19_05512 0.39 -0.5 217,509 + MPMX19_05512 0.39 -0.7 217,510 - MPMX19_05512 0.39 -0.8 217,510 - MPMX19_05512 0.39 -0.8 217,510 - MPMX19_05512 0.39 -0.4 217,510 - MPMX19_05512 0.39 -0.1 217,510 - MPMX19_05512 0.39 -1.1 217,518 + MPMX19_05512 0.40 -1.6 217,518 + MPMX19_05512 0.40 -1.2 217,519 - MPMX19_05512 0.40 -0.4 217,519 - MPMX19_05512 0.40 -1.5 217,519 - MPMX19_05512 0.40 -0.2 217,519 - MPMX19_05512 0.40 +0.4 217,519 - MPMX19_05512 0.40 +0.4 217,519 - MPMX19_05512 0.40 -2.0 217,614 + MPMX19_05512 0.56 -0.4 217,614 + MPMX19_05512 0.56 -0.6 217,614 + MPMX19_05512 0.56 +0.1 217,614 + MPMX19_05512 0.56 -0.1 217,614 + MPMX19_05512 0.56 +1.0 217,614 + MPMX19_05512 0.56 -1.5 217,614 + MPMX19_05512 0.56 -1.6 217,614 + MPMX19_05512 0.56 -0.9 217,614 + MPMX19_05512 0.56 -0.7 217,614 + MPMX19_05512 0.56 -0.1 217,614 + MPMX19_05512 0.56 -0.3 217,614 + MPMX19_05512 0.56 -0.7 217,614 + MPMX19_05512 0.56 -0.7 217,614 + MPMX19_05512 0.56 -0.1 217,614 + MPMX19_05512 0.56 -2.1 217,615 - MPMX19_05512 0.56 -0.2 217,615 - MPMX19_05512 0.56 +0.3 217,615 - MPMX19_05512 0.56 -0.6 217,615 - MPMX19_05512 0.56 +0.6 217,615 - MPMX19_05512 0.56 -0.4 217,615 - MPMX19_05512 0.56 -1.1 217,615 - MPMX19_05512 0.56 +0.9 217,615 - MPMX19_05512 0.56 -1.3 217,615 - MPMX19_05512 0.56 -0.2 217,615 - MPMX19_05512 0.56 +0.5 217,615 - MPMX19_05512 0.56 +0.9 217,615 - MPMX19_05512 0.56 -1.2 217,615 - MPMX19_05512 0.56 -0.8 217,761 + MPMX19_05512 0.79 +0.1 217,762 - MPMX19_05512 0.79 +0.2 217,762 - MPMX19_05512 0.79 +0.9 217,762 - MPMX19_05512 0.79 -1.1 217,914 + -0.1 217,914 + +0.8 217,914 + -1.5 217,914 + -0.3 217,914 + -1.7 217,914 + +0.5 217,914 + -1.8 217,914 + -0.1 217,914 + +0.3 217,914 + -2.1 217,914 + +0.7 217,914 + -0.8 217,914 + +1.3 217,915 - -0.3 217,915 - -0.7 217,915 - -1.3 217,915 - +0.7 217,915 - -2.3 217,916 + -0.2 217,916 + -0.8 217,916 + -1.2 217,916 + +1.3 217,916 + +1.5 217,916 + +0.2 217,916 + +0.5 217,917 - -1.8 217,917 - +0.1 217,917 - -0.3 217,917 - -0.5 217,917 - +0.5 217,917 - -0.3 217,917 - -1.2 217,917 - +0.7 217,917 - +0.3 217,917 - -0.5 217,917 - +0.1 217,917 - -0.5 217,917 - +0.5 218,236 + MPMX19_05513 0.15 +0.4 218,236 + MPMX19_05513 0.15 -0.2 218,237 - MPMX19_05513 0.15 -1.1 218,237 - MPMX19_05513 0.15 -1.9 218,237 - MPMX19_05513 0.15 -1.1 218,237 - MPMX19_05513 0.15 -0.5 218,237 - MPMX19_05513 0.15 +1.6 218,237 - MPMX19_05513 0.15 -0.7 218,237 - MPMX19_05513 0.15 -0.7 218,452 + MPMX19_05513 0.28 -0.5 218,452 + MPMX19_05513 0.28 -2.4 218,452 + MPMX19_05513 0.28 +0.1 218,452 + MPMX19_05513 0.28 -1.5 218,452 + MPMX19_05513 0.28 +2.0 218,452 + MPMX19_05513 0.28 +0.9 218,453 - MPMX19_05513 0.28 -1.0 218,453 - MPMX19_05513 0.28 -0.5 218,453 - MPMX19_05513 0.28 -0.7 218,488 + MPMX19_05513 0.31 -0.5 218,488 + MPMX19_05513 0.31 -1.3 218,488 + MPMX19_05513 0.31 -1.3 218,489 - MPMX19_05513 0.31 -0.4 218,489 - MPMX19_05513 0.31 -1.3 218,489 - MPMX19_05513 0.31 -1.1 218,518 + MPMX19_05513 0.33 +0.8 218,518 + MPMX19_05513 0.33 -0.3 218,518 + MPMX19_05513 0.33 -1.1 218,518 + MPMX19_05513 0.33 -1.3 218,519 - MPMX19_05513 0.33 +3.1 218,519 - MPMX19_05513 0.33 +0.2 218,947 + MPMX19_05513 0.60 -0.9 218,947 + MPMX19_05513 0.60 +0.9 218,947 + MPMX19_05513 0.60 -0.4 218,948 - MPMX19_05513 0.60 -0.8 218,948 - MPMX19_05513 0.60 -0.5 219,007 + MPMX19_05513 0.64 +0.4 219,008 - MPMX19_05513 0.64 -1.2 219,008 - MPMX19_05513 0.64 -0.1 219,008 - MPMX19_05513 0.64 -1.2 219,008 - MPMX19_05513 0.64 +0.9 219,008 - MPMX19_05513 0.64 -2.3 219,295 + MPMX19_05513 0.82 -0.3 219,295 + MPMX19_05513 0.82 -1.1 219,295 + MPMX19_05513 0.82 -0.8 219,295 + MPMX19_05513 0.82 +0.0 219,296 - MPMX19_05513 0.82 +0.9 219,296 - MPMX19_05513 0.82 -2.2 219,296 - MPMX19_05513 0.82 -1.1 219,296 - MPMX19_05513 0.82 +1.1 219,296 - MPMX19_05513 0.82 -0.0 219,296 - MPMX19_05513 0.82 -0.5 219,296 - MPMX19_05513 0.82 +0.7 219,296 - MPMX19_05513 0.82 +0.1 219,296 - MPMX19_05513 0.82 +0.5 219,448 + -0.9 219,448 + -0.9 219,448 + -0.2 219,448 + -0.5 219,448 + +1.1 219,448 + -0.6 219,449 - -1.7 219,449 - -0.1 219,449 - -0.2 219,449 - +0.1 219,449 - -1.1 219,449 - -0.3 219,571 + -0.3 219,571 + -1.1 219,571 + +0.2 219,571 + -1.8 219,571 + -0.3 219,571 + -0.5 219,571 + -0.6 219,571 + -0.8 219,571 + +0.3 219,571 + -0.4 219,571 + -0.5 219,572 - -1.6 219,572 - -0.9 219,572 - -0.5 219,572 - -1.3 219,572 - -1.5 219,572 - +0.2 219,572 - -2.5 219,572 - +0.1 219,596 + +0.1 219,596 + -0.7 219,597 - +0.1 219,613 + +0.2 219,613 + -0.5 219,614 - -1.1 219,614 - -0.9 219,614 - +0.5 219,696 + -0.6 219,696 + -1.0 219,696 + +0.1 220,568 - +0.7 220,568 - -0.7 220,568 - -0.3 220,568 - -1.2 220,568 - +0.5 220,568 - -2.0 220,568 - -0.1 220,568 - -0.2
Or see this region's nucleotide sequence