Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05438

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05436 and MPMX19_05437 are separated by 7 nucleotidesMPMX19_05437 and MPMX19_05438 overlap by 8 nucleotidesMPMX19_05438 and MPMX19_05439 are separated by 22 nucleotides MPMX19_05436: MPMX19_05436 - putative isomerase YddE, at 127,144 to 127,950 _05436 MPMX19_05437: MPMX19_05437 - hypothetical protein, at 127,958 to 128,344 _05437 MPMX19_05438: MPMX19_05438 - hypothetical protein, at 128,337 to 128,681 _05438 MPMX19_05439: MPMX19_05439 - hypothetical protein, at 128,704 to 129,723 _05439 Position (kb) 128 129Strain fitness (log2 ratio) -3 -2 -1 0 1at 127.493 kb on - strand, within MPMX19_05436at 127.603 kb on + strand, within MPMX19_05436at 127.603 kb on + strand, within MPMX19_05436at 127.603 kb on + strand, within MPMX19_05436at 127.603 kb on + strand, within MPMX19_05436at 127.603 kb on + strand, within MPMX19_05436at 127.603 kb on + strand, within MPMX19_05436at 127.603 kb on + strand, within MPMX19_05436at 127.603 kb on + strand, within MPMX19_05436at 127.603 kb on + strand, within MPMX19_05436at 127.604 kb on - strand, within MPMX19_05436at 127.604 kb on - strand, within MPMX19_05436at 127.604 kb on - strand, within MPMX19_05436at 127.615 kb on + strand, within MPMX19_05436at 127.616 kb on - strand, within MPMX19_05436at 127.653 kb on + strand, within MPMX19_05436at 127.804 kb on + strand, within MPMX19_05436at 127.804 kb on + strand, within MPMX19_05436at 127.804 kb on + strand, within MPMX19_05436at 127.805 kb on - strand, within MPMX19_05436at 127.805 kb on - strand, within MPMX19_05436at 127.805 kb on - strand, within MPMX19_05436at 127.924 kb on + strandat 127.924 kb on + strandat 127.924 kb on + strandat 127.924 kb on + strandat 127.924 kb on + strandat 127.924 kb on + strandat 127.924 kb on + strandat 127.924 kb on + strandat 127.925 kb on - strandat 127.925 kb on - strandat 127.925 kb on - strandat 127.925 kb on - strandat 127.925 kb on - strandat 127.925 kb on - strandat 127.925 kb on - strandat 128.057 kb on + strand, within MPMX19_05437at 128.057 kb on + strand, within MPMX19_05437at 128.057 kb on + strand, within MPMX19_05437at 128.057 kb on + strand, within MPMX19_05437at 128.057 kb on + strand, within MPMX19_05437at 128.057 kb on + strand, within MPMX19_05437at 128.057 kb on + strand, within MPMX19_05437at 128.057 kb on + strand, within MPMX19_05437at 128.058 kb on - strand, within MPMX19_05437at 128.058 kb on - strand, within MPMX19_05437at 128.058 kb on - strand, within MPMX19_05437at 128.058 kb on - strand, within MPMX19_05437at 128.058 kb on - strand, within MPMX19_05437at 128.058 kb on - strand, within MPMX19_05437at 128.084 kb on + strand, within MPMX19_05437at 128.084 kb on + strand, within MPMX19_05437at 128.084 kb on + strand, within MPMX19_05437at 128.085 kb on - strand, within MPMX19_05437at 128.168 kb on + strand, within MPMX19_05437at 128.168 kb on + strand, within MPMX19_05437at 128.168 kb on + strand, within MPMX19_05437at 128.168 kb on + strand, within MPMX19_05437at 128.168 kb on + strand, within MPMX19_05437at 128.168 kb on + strand, within MPMX19_05437at 128.168 kb on + strand, within MPMX19_05437at 128.168 kb on + strand, within MPMX19_05437at 128.168 kb on + strand, within MPMX19_05437at 128.168 kb on + strand, within MPMX19_05437at 128.168 kb on + strand, within MPMX19_05437at 128.168 kb on + strand, within MPMX19_05437at 128.168 kb on + strand, within MPMX19_05437at 128.168 kb on + strand, within MPMX19_05437at 128.169 kb on - strand, within MPMX19_05437at 128.169 kb on - strand, within MPMX19_05437at 128.169 kb on - strand, within MPMX19_05437at 128.169 kb on - strand, within MPMX19_05437at 128.169 kb on - strand, within MPMX19_05437at 128.169 kb on - strand, within MPMX19_05437at 128.169 kb on - strand, within MPMX19_05437at 128.169 kb on - strand, within MPMX19_05437at 128.169 kb on - strand, within MPMX19_05437at 128.169 kb on - strand, within MPMX19_05437at 128.169 kb on - strand, within MPMX19_05437at 128.169 kb on - strand, within MPMX19_05437at 128.169 kb on - strand, within MPMX19_05437at 128.169 kb on - strand, within MPMX19_05437at 128.169 kb on - strand, within MPMX19_05437at 128.169 kb on - strand, within MPMX19_05437at 128.174 kb on + strand, within MPMX19_05437at 128.174 kb on + strand, within MPMX19_05437at 128.174 kb on + strand, within MPMX19_05437at 128.174 kb on + strand, within MPMX19_05437at 128.174 kb on + strand, within MPMX19_05437at 128.174 kb on + strand, within MPMX19_05437at 128.174 kb on + strand, within MPMX19_05437at 128.174 kb on + strand, within MPMX19_05437at 128.174 kb on + strand, within MPMX19_05437at 128.174 kb on + strand, within MPMX19_05437at 128.174 kb on + strand, within MPMX19_05437at 128.174 kb on + strand, within MPMX19_05437at 128.174 kb on + strand, within MPMX19_05437at 128.174 kb on + strand, within MPMX19_05437at 128.174 kb on + strand, within MPMX19_05437at 128.174 kb on + strand, within MPMX19_05437at 128.174 kb on + strand, within MPMX19_05437at 128.175 kb on - strand, within MPMX19_05437at 128.175 kb on - strand, within MPMX19_05437at 128.175 kb on - strand, within MPMX19_05437at 128.175 kb on - strand, within MPMX19_05437at 128.175 kb on - strand, within MPMX19_05437at 128.175 kb on - strand, within MPMX19_05437at 128.175 kb on - strand, within MPMX19_05437at 128.175 kb on - strand, within MPMX19_05437at 128.175 kb on - strand, within MPMX19_05437at 128.175 kb on - strand, within MPMX19_05437at 128.348 kb on + strandat 128.348 kb on + strandat 128.348 kb on + strandat 128.349 kb on - strandat 128.349 kb on - strandat 128.349 kb on - strandat 128.349 kb on - strandat 128.349 kb on - strandat 128.367 kb on + strandat 128.367 kb on + strandat 128.367 kb on + strandat 128.367 kb on + strandat 128.368 kb on - strandat 128.604 kb on + strand, within MPMX19_05438at 128.604 kb on + strand, within MPMX19_05438at 128.604 kb on + strand, within MPMX19_05438at 128.605 kb on - strand, within MPMX19_05438at 128.605 kb on - strand, within MPMX19_05438at 128.620 kb on - strand, within MPMX19_05438at 128.620 kb on - strand, within MPMX19_05438at 128.667 kb on + strandat 128.667 kb on + strandat 128.667 kb on + strandat 128.667 kb on + strandat 128.667 kb on + strandat 128.667 kb on + strandat 128.667 kb on + strandat 128.667 kb on + strandat 128.667 kb on + strandat 128.667 kb on + strandat 128.667 kb on + strandat 128.667 kb on + strandat 128.667 kb on + strandat 128.667 kb on + strandat 128.667 kb on + strandat 128.667 kb on + strandat 128.667 kb on + strandat 128.668 kb on - strandat 128.668 kb on - strandat 128.668 kb on - strandat 128.668 kb on - strandat 128.668 kb on - strandat 128.668 kb on - strandat 128.668 kb on - strandat 128.668 kb on - strandat 128.668 kb on - strandat 128.668 kb on - strandat 128.668 kb on - strandat 128.668 kb on - strandat 128.668 kb on - strandat 128.668 kb on - strandat 128.679 kb on + strandat 128.679 kb on + strandat 128.679 kb on + strandat 128.679 kb on + strandat 128.680 kb on - strandat 128.680 kb on - strandat 128.680 kb on - strandat 128.801 kb on + strandat 128.802 kb on - strandat 128.802 kb on - strandat 128.802 kb on - strandat 128.958 kb on + strand, within MPMX19_05439at 128.958 kb on + strand, within MPMX19_05439at 128.959 kb on - strand, within MPMX19_05439at 129.152 kb on + strand, within MPMX19_05439at 129.152 kb on + strand, within MPMX19_05439at 129.152 kb on + strand, within MPMX19_05439at 129.152 kb on + strand, within MPMX19_05439at 129.152 kb on + strand, within MPMX19_05439at 129.152 kb on + strand, within MPMX19_05439at 129.152 kb on + strand, within MPMX19_05439at 129.152 kb on + strand, within MPMX19_05439at 129.153 kb on - strand, within MPMX19_05439at 129.153 kb on - strand, within MPMX19_05439at 129.153 kb on - strand, within MPMX19_05439at 129.153 kb on - strand, within MPMX19_05439at 129.153 kb on - strand, within MPMX19_05439at 129.153 kb on - strand, within MPMX19_05439at 129.287 kb on + strand, within MPMX19_05439at 129.287 kb on + strand, within MPMX19_05439at 129.288 kb on - strand, within MPMX19_05439at 129.288 kb on - strand, within MPMX19_05439at 129.288 kb on - strand, within MPMX19_05439at 129.414 kb on + strand, within MPMX19_05439at 129.414 kb on + strand, within MPMX19_05439at 129.414 kb on + strand, within MPMX19_05439at 129.414 kb on + strand, within MPMX19_05439at 129.415 kb on - strand, within MPMX19_05439at 129.415 kb on - strand, within MPMX19_05439at 129.438 kb on + strand, within MPMX19_05439

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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127,493 - MPMX19_05436 0.43 +0.0
127,603 + MPMX19_05436 0.57 -1.2
127,603 + MPMX19_05436 0.57 +0.4
127,603 + MPMX19_05436 0.57 -1.9
127,603 + MPMX19_05436 0.57 -0.3
127,603 + MPMX19_05436 0.57 -0.8
127,603 + MPMX19_05436 0.57 -2.4
127,603 + MPMX19_05436 0.57 -1.7
127,603 + MPMX19_05436 0.57 -0.9
127,603 + MPMX19_05436 0.57 -0.1
127,604 - MPMX19_05436 0.57 +1.4
127,604 - MPMX19_05436 0.57 -0.8
127,604 - MPMX19_05436 0.57 -0.5
127,615 + MPMX19_05436 0.58 -0.1
127,616 - MPMX19_05436 0.58 -0.0
127,653 + MPMX19_05436 0.63 -1.2
127,804 + MPMX19_05436 0.82 -1.3
127,804 + MPMX19_05436 0.82 -1.2
127,804 + MPMX19_05436 0.82 +0.0
127,805 - MPMX19_05436 0.82 +0.2
127,805 - MPMX19_05436 0.82 -1.3
127,805 - MPMX19_05436 0.82 -2.5
127,924 + -1.1
127,924 + -1.5
127,924 + -2.0
127,924 + -0.5
127,924 + -1.4
127,924 + -0.5
127,924 + -1.3
127,924 + -0.9
127,925 - -0.1
127,925 - -0.9
127,925 - -0.5
127,925 - -1.4
127,925 - -0.7
127,925 - -0.6
127,925 - -0.1
128,057 + MPMX19_05437 0.26 -0.2
128,057 + MPMX19_05437 0.26 -0.2
128,057 + MPMX19_05437 0.26 -1.2
128,057 + MPMX19_05437 0.26 -1.3
128,057 + MPMX19_05437 0.26 -0.4
128,057 + MPMX19_05437 0.26 -1.2
128,057 + MPMX19_05437 0.26 -0.1
128,057 + MPMX19_05437 0.26 -0.6
128,058 - MPMX19_05437 0.26 +0.1
128,058 - MPMX19_05437 0.26 -0.5
128,058 - MPMX19_05437 0.26 +0.6
128,058 - MPMX19_05437 0.26 -0.2
128,058 - MPMX19_05437 0.26 -0.6
128,058 - MPMX19_05437 0.26 -1.6
128,084 + MPMX19_05437 0.33 +1.1
128,084 + MPMX19_05437 0.33 +0.5
128,084 + MPMX19_05437 0.33 -1.5
128,085 - MPMX19_05437 0.33 +0.7
128,168 + MPMX19_05437 0.54 -0.7
128,168 + MPMX19_05437 0.54 -0.9
128,168 + MPMX19_05437 0.54 -2.6
128,168 + MPMX19_05437 0.54 -0.7
128,168 + MPMX19_05437 0.54 +0.3
128,168 + MPMX19_05437 0.54 +0.3
128,168 + MPMX19_05437 0.54 -0.5
128,168 + MPMX19_05437 0.54 -0.6
128,168 + MPMX19_05437 0.54 +0.2
128,168 + MPMX19_05437 0.54 -1.3
128,168 + MPMX19_05437 0.54 -1.2
128,168 + MPMX19_05437 0.54 -1.3
128,168 + MPMX19_05437 0.54 -0.5
128,168 + MPMX19_05437 0.54 +0.3
128,169 - MPMX19_05437 0.55 -0.5
128,169 - MPMX19_05437 0.55 -0.2
128,169 - MPMX19_05437 0.55 -0.2
128,169 - MPMX19_05437 0.55 -1.3
128,169 - MPMX19_05437 0.55 -0.6
128,169 - MPMX19_05437 0.55 -0.8
128,169 - MPMX19_05437 0.55 -0.2
128,169 - MPMX19_05437 0.55 +1.1
128,169 - MPMX19_05437 0.55 -0.1
128,169 - MPMX19_05437 0.55 +1.1
128,169 - MPMX19_05437 0.55 -0.4
128,169 - MPMX19_05437 0.55 -1.3
128,169 - MPMX19_05437 0.55 -0.6
128,169 - MPMX19_05437 0.55 -2.0
128,169 - MPMX19_05437 0.55 -0.9
128,169 - MPMX19_05437 0.55 -1.1
128,174 + MPMX19_05437 0.56 -0.9
128,174 + MPMX19_05437 0.56 -2.0
128,174 + MPMX19_05437 0.56 -2.2
128,174 + MPMX19_05437 0.56 +0.5
128,174 + MPMX19_05437 0.56 -0.3
128,174 + MPMX19_05437 0.56 -1.1
128,174 + MPMX19_05437 0.56 -0.2
128,174 + MPMX19_05437 0.56 +0.4
128,174 + MPMX19_05437 0.56 -1.1
128,174 + MPMX19_05437 0.56 -1.1
128,174 + MPMX19_05437 0.56 -0.5
128,174 + MPMX19_05437 0.56 +0.7
128,174 + MPMX19_05437 0.56 -0.2
128,174 + MPMX19_05437 0.56 -0.4
128,174 + MPMX19_05437 0.56 -0.4
128,174 + MPMX19_05437 0.56 -0.7
128,174 + MPMX19_05437 0.56 -0.2
128,175 - MPMX19_05437 0.56 +0.4
128,175 - MPMX19_05437 0.56 -0.5
128,175 - MPMX19_05437 0.56 -0.6
128,175 - MPMX19_05437 0.56 -0.7
128,175 - MPMX19_05437 0.56 -1.7
128,175 - MPMX19_05437 0.56 -2.3
128,175 - MPMX19_05437 0.56 +1.0
128,175 - MPMX19_05437 0.56 -1.1
128,175 - MPMX19_05437 0.56 -0.9
128,175 - MPMX19_05437 0.56 +0.1
128,348 + -2.3
128,348 + -1.2
128,348 + +0.3
128,349 - -0.7
128,349 - +0.5
128,349 - +0.0
128,349 - +0.1
128,349 - -1.9
128,367 + +0.1
128,367 + -1.1
128,367 + -0.8
128,367 + -1.3
128,368 - -0.5
128,604 + MPMX19_05438 0.77 -1.5
128,604 + MPMX19_05438 0.77 -1.1
128,604 + MPMX19_05438 0.77 -0.2
128,605 - MPMX19_05438 0.78 -1.1
128,605 - MPMX19_05438 0.78 -3.1
128,620 - MPMX19_05438 0.82 -1.3
128,620 - MPMX19_05438 0.82 -1.6
128,667 + -0.1
128,667 + -1.1
128,667 + -1.7
128,667 + -2.1
128,667 + -1.5
128,667 + -1.0
128,667 + +1.4
128,667 + -2.3
128,667 + -1.8
128,667 + +0.0
128,667 + +0.3
128,667 + +0.0
128,667 + +0.0
128,667 + -0.1
128,667 + -0.7
128,667 + -0.5
128,667 + -1.1
128,668 - -0.5
128,668 - -1.9
128,668 - -2.0
128,668 - -1.7
128,668 - -1.8
128,668 - -1.9
128,668 - -0.1
128,668 - -0.2
128,668 - -1.1
128,668 - -1.7
128,668 - -0.6
128,668 - -0.9
128,668 - -1.6
128,668 - -0.5
128,679 + +0.0
128,679 + -1.2
128,679 + -1.7
128,679 + -1.2
128,680 - +0.4
128,680 - -0.8
128,680 - +1.3
128,801 + -0.7
128,802 - +0.1
128,802 - -1.7
128,802 - -1.2
128,958 + MPMX19_05439 0.25 +0.4
128,958 + MPMX19_05439 0.25 -1.1
128,959 - MPMX19_05439 0.25 -0.2
129,152 + MPMX19_05439 0.44 -1.6
129,152 + MPMX19_05439 0.44 -0.8
129,152 + MPMX19_05439 0.44 -1.1
129,152 + MPMX19_05439 0.44 +0.4
129,152 + MPMX19_05439 0.44 -0.6
129,152 + MPMX19_05439 0.44 +0.5
129,152 + MPMX19_05439 0.44 -1.2
129,152 + MPMX19_05439 0.44 -1.6
129,153 - MPMX19_05439 0.44 +0.1
129,153 - MPMX19_05439 0.44 -0.7
129,153 - MPMX19_05439 0.44 -2.1
129,153 - MPMX19_05439 0.44 +1.4
129,153 - MPMX19_05439 0.44 +1.7
129,153 - MPMX19_05439 0.44 -2.1
129,287 + MPMX19_05439 0.57 +1.1
129,287 + MPMX19_05439 0.57 -0.7
129,288 - MPMX19_05439 0.57 -0.1
129,288 - MPMX19_05439 0.57 -2.3
129,288 - MPMX19_05439 0.57 -0.7
129,414 + MPMX19_05439 0.70 -0.5
129,414 + MPMX19_05439 0.70 +0.4
129,414 + MPMX19_05439 0.70 -1.1
129,414 + MPMX19_05439 0.70 -2.3
129,415 - MPMX19_05439 0.70 -1.0
129,415 - MPMX19_05439 0.70 +0.1
129,438 + MPMX19_05439 0.72 +0.3

Or see this region's nucleotide sequence