Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05432

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05431 and MPMX19_05432 are separated by 185 nucleotidesMPMX19_05432 and MPMX19_05433 are separated by 345 nucleotidesMPMX19_05433 and MPMX19_05434 are separated by 4 nucleotides MPMX19_05431: MPMX19_05431 - 1-deoxyxylulose-5-phosphate synthase YajO, at 123,076 to 124,110 _05431 MPMX19_05432: MPMX19_05432 - hypothetical protein, at 124,296 to 124,961 _05432 MPMX19_05433: MPMX19_05433 - hypothetical protein, at 125,307 to 125,558 _05433 MPMX19_05434: MPMX19_05434 - hypothetical protein, at 125,563 to 125,997 _05434 Position (kb) 124 125Strain fitness (log2 ratio) -2 -1 0 1 2at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.438 kb on + strand, within MPMX19_05431at 123.438 kb on + strand, within MPMX19_05431at 123.438 kb on + strand, within MPMX19_05431at 123.438 kb on + strand, within MPMX19_05431at 123.438 kb on + strand, within MPMX19_05431at 123.438 kb on + strand, within MPMX19_05431at 123.439 kb on - strand, within MPMX19_05431at 123.439 kb on - strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.536 kb on - strand, within MPMX19_05431at 123.536 kb on - strand, within MPMX19_05431at 123.536 kb on - strand, within MPMX19_05431at 123.536 kb on - strand, within MPMX19_05431at 123.536 kb on - strand, within MPMX19_05431at 123.536 kb on - strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.635 kb on - strand, within MPMX19_05431at 123.635 kb on - strand, within MPMX19_05431at 123.635 kb on - strand, within MPMX19_05431at 123.635 kb on - strand, within MPMX19_05431at 123.635 kb on - strand, within MPMX19_05431at 123.635 kb on - strand, within MPMX19_05431at 123.635 kb on - strand, within MPMX19_05431at 123.655 kb on + strand, within MPMX19_05431at 123.655 kb on + strand, within MPMX19_05431at 123.655 kb on + strand, within MPMX19_05431at 123.655 kb on + strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.829 kb on + strand, within MPMX19_05431at 123.829 kb on + strand, within MPMX19_05431at 123.830 kb on - strand, within MPMX19_05431at 123.830 kb on - strand, within MPMX19_05431at 123.830 kb on - strand, within MPMX19_05431at 124.054 kb on + strandat 124.054 kb on + strandat 124.054 kb on + strandat 124.054 kb on + strandat 124.054 kb on + strandat 124.055 kb on - strandat 124.057 kb on + strandat 124.209 kb on + strandat 124.210 kb on - strandat 124.210 kb on - strandat 124.342 kb on - strandat 124.518 kb on + strand, within MPMX19_05432at 124.518 kb on + strand, within MPMX19_05432at 124.518 kb on + strand, within MPMX19_05432at 124.519 kb on - strand, within MPMX19_05432at 124.519 kb on - strand, within MPMX19_05432at 124.519 kb on - strand, within MPMX19_05432at 124.563 kb on + strand, within MPMX19_05432at 124.563 kb on + strand, within MPMX19_05432at 124.563 kb on + strand, within MPMX19_05432at 124.563 kb on + strand, within MPMX19_05432at 124.563 kb on + strand, within MPMX19_05432at 124.563 kb on + strand, within MPMX19_05432at 124.564 kb on - strand, within MPMX19_05432at 124.582 kb on - strand, within MPMX19_05432at 124.582 kb on - strand, within MPMX19_05432at 124.837 kb on - strand, within MPMX19_05432at 124.959 kb on + strandat 124.959 kb on + strandat 124.959 kb on + strandat 124.960 kb on - strandat 125.018 kb on + strandat 125.189 kb on - strandat 125.252 kb on + strandat 125.253 kb on - strandat 125.343 kb on + strand, within MPMX19_05433at 125.343 kb on + strand, within MPMX19_05433at 125.343 kb on + strand, within MPMX19_05433at 125.343 kb on + strand, within MPMX19_05433at 125.343 kb on + strand, within MPMX19_05433at 125.343 kb on + strand, within MPMX19_05433at 125.343 kb on + strand, within MPMX19_05433at 125.343 kb on + strand, within MPMX19_05433at 125.344 kb on - strand, within MPMX19_05433at 125.344 kb on - strand, within MPMX19_05433at 125.344 kb on - strand, within MPMX19_05433at 125.344 kb on - strand, within MPMX19_05433at 125.484 kb on + strand, within MPMX19_05433at 125.484 kb on + strand, within MPMX19_05433at 125.484 kb on + strand, within MPMX19_05433at 125.485 kb on - strand, within MPMX19_05433at 125.485 kb on - strand, within MPMX19_05433at 125.485 kb on - strand, within MPMX19_05433at 125.605 kb on + strandat 125.605 kb on + strandat 125.605 kb on + strandat 125.606 kb on - strandat 125.794 kb on + strand, within MPMX19_05434at 125.794 kb on + strand, within MPMX19_05434at 125.795 kb on - strand, within MPMX19_05434at 125.795 kb on - strand, within MPMX19_05434at 125.795 kb on - strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.939 kb on - strand, within MPMX19_05434at 125.939 kb on - strand, within MPMX19_05434at 125.939 kb on - strand, within MPMX19_05434

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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123,436 + MPMX19_05431 0.35 +0.7
123,436 + MPMX19_05431 0.35 -0.7
123,436 + MPMX19_05431 0.35 -0.9
123,436 + MPMX19_05431 0.35 -1.1
123,436 + MPMX19_05431 0.35 -0.1
123,436 + MPMX19_05431 0.35 -2.3
123,436 + MPMX19_05431 0.35 -0.7
123,436 + MPMX19_05431 0.35 -0.7
123,436 + MPMX19_05431 0.35 -0.1
123,436 + MPMX19_05431 0.35 -0.2
123,436 + MPMX19_05431 0.35 -0.9
123,436 + MPMX19_05431 0.35 +0.1
123,437 - MPMX19_05431 0.35 -0.1
123,437 - MPMX19_05431 0.35 -1.3
123,437 - MPMX19_05431 0.35 -0.9
123,437 - MPMX19_05431 0.35 -1.1
123,437 - MPMX19_05431 0.35 -0.5
123,437 - MPMX19_05431 0.35 -0.9
123,437 - MPMX19_05431 0.35 -0.9
123,437 - MPMX19_05431 0.35 +0.5
123,437 - MPMX19_05431 0.35 -1.2
123,437 - MPMX19_05431 0.35 -0.7
123,437 - MPMX19_05431 0.35 -0.5
123,438 + MPMX19_05431 0.35 -1.2
123,438 + MPMX19_05431 0.35 +0.2
123,438 + MPMX19_05431 0.35 +1.4
123,438 + MPMX19_05431 0.35 -0.5
123,438 + MPMX19_05431 0.35 -0.6
123,438 + MPMX19_05431 0.35 -0.8
123,439 - MPMX19_05431 0.35 -1.5
123,439 - MPMX19_05431 0.35 -1.6
123,535 + MPMX19_05431 0.44 -1.2
123,535 + MPMX19_05431 0.44 -0.5
123,535 + MPMX19_05431 0.44 +0.0
123,535 + MPMX19_05431 0.44 +0.3
123,535 + MPMX19_05431 0.44 -1.2
123,535 + MPMX19_05431 0.44 +1.9
123,535 + MPMX19_05431 0.44 -0.9
123,535 + MPMX19_05431 0.44 -0.6
123,535 + MPMX19_05431 0.44 -0.2
123,535 + MPMX19_05431 0.44 +0.3
123,536 - MPMX19_05431 0.44 +0.3
123,536 - MPMX19_05431 0.44 +0.2
123,536 - MPMX19_05431 0.44 -1.4
123,536 - MPMX19_05431 0.44 -0.8
123,536 - MPMX19_05431 0.44 -1.5
123,536 - MPMX19_05431 0.44 -0.7
123,631 + MPMX19_05431 0.54 -0.4
123,631 + MPMX19_05431 0.54 -0.2
123,631 + MPMX19_05431 0.54 -0.1
123,631 + MPMX19_05431 0.54 -1.6
123,631 + MPMX19_05431 0.54 -1.6
123,631 + MPMX19_05431 0.54 -0.8
123,631 + MPMX19_05431 0.54 -0.0
123,631 + MPMX19_05431 0.54 -1.2
123,631 + MPMX19_05431 0.54 +0.8
123,631 + MPMX19_05431 0.54 -0.5
123,631 + MPMX19_05431 0.54 -1.4
123,631 + MPMX19_05431 0.54 -2.2
123,632 - MPMX19_05431 0.54 -0.8
123,632 - MPMX19_05431 0.54 +0.2
123,632 - MPMX19_05431 0.54 -0.3
123,632 - MPMX19_05431 0.54 -0.5
123,632 - MPMX19_05431 0.54 -0.9
123,632 - MPMX19_05431 0.54 -0.6
123,632 - MPMX19_05431 0.54 -0.1
123,632 - MPMX19_05431 0.54 -0.5
123,632 - MPMX19_05431 0.54 -1.9
123,634 + MPMX19_05431 0.54 -1.9
123,634 + MPMX19_05431 0.54 +0.1
123,634 + MPMX19_05431 0.54 -1.7
123,634 + MPMX19_05431 0.54 -0.5
123,634 + MPMX19_05431 0.54 -0.1
123,634 + MPMX19_05431 0.54 -0.0
123,634 + MPMX19_05431 0.54 -0.1
123,634 + MPMX19_05431 0.54 -2.3
123,634 + MPMX19_05431 0.54 -0.7
123,634 + MPMX19_05431 0.54 +0.3
123,635 - MPMX19_05431 0.54 +1.3
123,635 - MPMX19_05431 0.54 -0.8
123,635 - MPMX19_05431 0.54 -1.3
123,635 - MPMX19_05431 0.54 -1.8
123,635 - MPMX19_05431 0.54 -0.5
123,635 - MPMX19_05431 0.54 -0.7
123,635 - MPMX19_05431 0.54 +0.5
123,655 + MPMX19_05431 0.56 -1.5
123,655 + MPMX19_05431 0.56 -0.7
123,655 + MPMX19_05431 0.56 +0.3
123,655 + MPMX19_05431 0.56 -0.1
123,656 - MPMX19_05431 0.56 -0.7
123,656 - MPMX19_05431 0.56 -1.2
123,656 - MPMX19_05431 0.56 -0.6
123,656 - MPMX19_05431 0.56 -0.2
123,656 - MPMX19_05431 0.56 -0.7
123,656 - MPMX19_05431 0.56 +0.1
123,656 - MPMX19_05431 0.56 +0.9
123,656 - MPMX19_05431 0.56 -0.1
123,656 - MPMX19_05431 0.56 -0.1
123,656 - MPMX19_05431 0.56 -0.6
123,656 - MPMX19_05431 0.56 +2.1
123,656 - MPMX19_05431 0.56 -0.9
123,829 + MPMX19_05431 0.73 -0.5
123,829 + MPMX19_05431 0.73 -1.3
123,830 - MPMX19_05431 0.73 -0.9
123,830 - MPMX19_05431 0.73 +0.1
123,830 - MPMX19_05431 0.73 +0.1
124,054 + -1.5
124,054 + +0.3
124,054 + -0.7
124,054 + +0.1
124,054 + -1.3
124,055 - -2.5
124,057 + -0.9
124,209 + -0.5
124,210 - +1.1
124,210 - -1.0
124,342 - -1.5
124,518 + MPMX19_05432 0.33 -1.0
124,518 + MPMX19_05432 0.33 +0.5
124,518 + MPMX19_05432 0.33 -0.9
124,519 - MPMX19_05432 0.33 -0.3
124,519 - MPMX19_05432 0.33 -0.9
124,519 - MPMX19_05432 0.33 -0.8
124,563 + MPMX19_05432 0.40 -1.0
124,563 + MPMX19_05432 0.40 -1.4
124,563 + MPMX19_05432 0.40 +0.8
124,563 + MPMX19_05432 0.40 -2.5
124,563 + MPMX19_05432 0.40 -0.5
124,563 + MPMX19_05432 0.40 -0.3
124,564 - MPMX19_05432 0.40 +0.8
124,582 - MPMX19_05432 0.43 -0.9
124,582 - MPMX19_05432 0.43 -0.5
124,837 - MPMX19_05432 0.81 -1.3
124,959 + +0.5
124,959 + -0.7
124,959 + -1.7
124,960 - -0.7
125,018 + +0.0
125,189 - -0.3
125,252 + -0.1
125,253 - -1.1
125,343 + MPMX19_05433 0.14 -0.7
125,343 + MPMX19_05433 0.14 +0.5
125,343 + MPMX19_05433 0.14 -1.1
125,343 + MPMX19_05433 0.14 -0.1
125,343 + MPMX19_05433 0.14 +0.4
125,343 + MPMX19_05433 0.14 -2.4
125,343 + MPMX19_05433 0.14 -1.9
125,343 + MPMX19_05433 0.14 +0.4
125,344 - MPMX19_05433 0.15 +0.5
125,344 - MPMX19_05433 0.15 -0.6
125,344 - MPMX19_05433 0.15 -0.5
125,344 - MPMX19_05433 0.15 -0.3
125,484 + MPMX19_05433 0.70 -0.9
125,484 + MPMX19_05433 0.70 -0.6
125,484 + MPMX19_05433 0.70 -0.2
125,485 - MPMX19_05433 0.71 -0.7
125,485 - MPMX19_05433 0.71 -0.9
125,485 - MPMX19_05433 0.71 -1.1
125,605 + -0.9
125,605 + -2.0
125,605 + -1.3
125,606 - +0.1
125,794 + MPMX19_05434 0.53 -1.1
125,794 + MPMX19_05434 0.53 -0.2
125,795 - MPMX19_05434 0.53 +0.2
125,795 - MPMX19_05434 0.53 -0.5
125,795 - MPMX19_05434 0.53 -2.2
125,803 + MPMX19_05434 0.55 -0.5
125,803 + MPMX19_05434 0.55 -0.0
125,803 + MPMX19_05434 0.55 +0.0
125,803 + MPMX19_05434 0.55 -1.8
125,803 + MPMX19_05434 0.55 -0.8
125,803 + MPMX19_05434 0.55 -1.0
125,803 + MPMX19_05434 0.55 -1.6
125,803 + MPMX19_05434 0.55 -0.8
125,803 + MPMX19_05434 0.55 +1.1
125,803 + MPMX19_05434 0.55 -1.2
125,804 - MPMX19_05434 0.55 -0.3
125,804 - MPMX19_05434 0.55 +0.5
125,804 - MPMX19_05434 0.55 -0.5
125,804 - MPMX19_05434 0.55 -0.4
125,804 - MPMX19_05434 0.55 +0.4
125,804 - MPMX19_05434 0.55 +0.4
125,804 - MPMX19_05434 0.55 -0.2
125,804 - MPMX19_05434 0.55 +1.0
125,804 - MPMX19_05434 0.55 -0.4
125,804 - MPMX19_05434 0.55 -1.2
125,804 - MPMX19_05434 0.55 -0.5
125,938 + MPMX19_05434 0.86 -1.7
125,938 + MPMX19_05434 0.86 -1.1
125,938 + MPMX19_05434 0.86 -1.9
125,938 + MPMX19_05434 0.86 -0.2
125,938 + MPMX19_05434 0.86 -0.5
125,938 + MPMX19_05434 0.86 -2.4
125,938 + MPMX19_05434 0.86 +0.1
125,938 + MPMX19_05434 0.86 +0.1
125,938 + MPMX19_05434 0.86 -0.5
125,938 + MPMX19_05434 0.86 -1.1
125,939 - MPMX19_05434 0.86 -0.9
125,939 - MPMX19_05434 0.86 -0.5
125,939 - MPMX19_05434 0.86 -0.7

Or see this region's nucleotide sequence