Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05430 and MPMX19_05431 are separated by 142 nucleotides MPMX19_05431 and MPMX19_05432 are separated by 185 nucleotides
MPMX19_05430: MPMX19_05430 - HTH-type transcriptional regulator DmlR, at 122,016 to 122,933
_05430
MPMX19_05431: MPMX19_05431 - 1-deoxyxylulose-5-phosphate synthase YajO, at 123,076 to 124,110
_05431
MPMX19_05432: MPMX19_05432 - hypothetical protein, at 124,296 to 124,961
_05432
Position (kb) 123
124
125 Strain fitness (log2 ratio) -2
-1
0
1
2 at 122.104 kb on + strand at 122.104 kb on + strand at 122.419 kb on + strand, within MPMX19_05430 at 122.419 kb on + strand, within MPMX19_05430 at 122.419 kb on + strand, within MPMX19_05430 at 122.419 kb on + strand, within MPMX19_05430 at 122.420 kb on - strand, within MPMX19_05430 at 122.985 kb on + strand at 122.985 kb on + strand at 122.985 kb on + strand at 122.985 kb on + strand at 122.986 kb on - strand at 122.986 kb on - strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.009 kb on - strand at 123.009 kb on - strand at 123.009 kb on - strand at 123.009 kb on - strand at 123.009 kb on - strand at 123.009 kb on - strand at 123.009 kb on - strand at 123.009 kb on - strand at 123.009 kb on - strand at 123.009 kb on - strand at 123.009 kb on - strand at 123.010 kb on + strand at 123.010 kb on + strand at 123.010 kb on + strand at 123.010 kb on + strand at 123.010 kb on + strand at 123.010 kb on + strand at 123.011 kb on - strand at 123.011 kb on - strand at 123.011 kb on - strand at 123.011 kb on - strand at 123.011 kb on - strand at 123.011 kb on - strand at 123.011 kb on - strand at 123.011 kb on - strand at 123.011 kb on - strand at 123.011 kb on - strand at 123.259 kb on + strand, within MPMX19_05431 at 123.260 kb on - strand, within MPMX19_05431 at 123.260 kb on - strand, within MPMX19_05431 at 123.260 kb on - strand, within MPMX19_05431 at 123.260 kb on - strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.438 kb on + strand, within MPMX19_05431 at 123.438 kb on + strand, within MPMX19_05431 at 123.438 kb on + strand, within MPMX19_05431 at 123.438 kb on + strand, within MPMX19_05431 at 123.438 kb on + strand, within MPMX19_05431 at 123.438 kb on + strand, within MPMX19_05431 at 123.439 kb on - strand, within MPMX19_05431 at 123.439 kb on - strand, within MPMX19_05431 at 123.535 kb on + strand, within MPMX19_05431 at 123.535 kb on + strand, within MPMX19_05431 at 123.535 kb on + strand, within MPMX19_05431 at 123.535 kb on + strand, within MPMX19_05431 at 123.535 kb on + strand, within MPMX19_05431 at 123.535 kb on + strand, within MPMX19_05431 at 123.535 kb on + strand, within MPMX19_05431 at 123.535 kb on + strand, within MPMX19_05431 at 123.535 kb on + strand, within MPMX19_05431 at 123.535 kb on + strand, within MPMX19_05431 at 123.536 kb on - strand, within MPMX19_05431 at 123.536 kb on - strand, within MPMX19_05431 at 123.536 kb on - strand, within MPMX19_05431 at 123.536 kb on - strand, within MPMX19_05431 at 123.536 kb on - strand, within MPMX19_05431 at 123.536 kb on - strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.632 kb on - strand, within MPMX19_05431 at 123.632 kb on - strand, within MPMX19_05431 at 123.632 kb on - strand, within MPMX19_05431 at 123.632 kb on - strand, within MPMX19_05431 at 123.632 kb on - strand, within MPMX19_05431 at 123.632 kb on - strand, within MPMX19_05431 at 123.632 kb on - strand, within MPMX19_05431 at 123.632 kb on - strand, within MPMX19_05431 at 123.632 kb on - strand, within MPMX19_05431 at 123.634 kb on + strand, within MPMX19_05431 at 123.634 kb on + strand, within MPMX19_05431 at 123.634 kb on + strand, within MPMX19_05431 at 123.634 kb on + strand, within MPMX19_05431 at 123.634 kb on + strand, within MPMX19_05431 at 123.634 kb on + strand, within MPMX19_05431 at 123.634 kb on + strand, within MPMX19_05431 at 123.634 kb on + strand, within MPMX19_05431 at 123.634 kb on + strand, within MPMX19_05431 at 123.634 kb on + strand, within MPMX19_05431 at 123.635 kb on - strand, within MPMX19_05431 at 123.635 kb on - strand, within MPMX19_05431 at 123.635 kb on - strand, within MPMX19_05431 at 123.635 kb on - strand, within MPMX19_05431 at 123.635 kb on - strand, within MPMX19_05431 at 123.635 kb on - strand, within MPMX19_05431 at 123.635 kb on - strand, within MPMX19_05431 at 123.655 kb on + strand, within MPMX19_05431 at 123.655 kb on + strand, within MPMX19_05431 at 123.655 kb on + strand, within MPMX19_05431 at 123.655 kb on + strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.829 kb on + strand, within MPMX19_05431 at 123.829 kb on + strand, within MPMX19_05431 at 123.830 kb on - strand, within MPMX19_05431 at 123.830 kb on - strand, within MPMX19_05431 at 123.830 kb on - strand, within MPMX19_05431 at 124.054 kb on + strand at 124.054 kb on + strand at 124.054 kb on + strand at 124.054 kb on + strand at 124.054 kb on + strand at 124.055 kb on - strand at 124.057 kb on + strand at 124.209 kb on + strand at 124.210 kb on - strand at 124.210 kb on - strand at 124.342 kb on - strand at 124.518 kb on + strand, within MPMX19_05432 at 124.518 kb on + strand, within MPMX19_05432 at 124.518 kb on + strand, within MPMX19_05432 at 124.519 kb on - strand, within MPMX19_05432 at 124.519 kb on - strand, within MPMX19_05432 at 124.519 kb on - strand, within MPMX19_05432 at 124.563 kb on + strand, within MPMX19_05432 at 124.563 kb on + strand, within MPMX19_05432 at 124.563 kb on + strand, within MPMX19_05432 at 124.563 kb on + strand, within MPMX19_05432 at 124.563 kb on + strand, within MPMX19_05432 at 124.563 kb on + strand, within MPMX19_05432 at 124.564 kb on - strand, within MPMX19_05432 at 124.582 kb on - strand, within MPMX19_05432 at 124.582 kb on - strand, within MPMX19_05432 at 124.837 kb on - strand, within MPMX19_05432 at 124.959 kb on + strand at 124.959 kb on + strand at 124.959 kb on + strand at 124.960 kb on - strand at 125.018 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 122,104 + +0.1 122,104 + -0.2 122,419 + MPMX19_05430 0.44 +0.2 122,419 + MPMX19_05430 0.44 -1.7 122,419 + MPMX19_05430 0.44 +1.1 122,419 + MPMX19_05430 0.44 -0.2 122,420 - MPMX19_05430 0.44 -0.2 122,985 + -0.1 122,985 + -0.1 122,985 + +1.4 122,985 + -0.6 122,986 - -1.1 122,986 - +0.1 123,008 + -0.2 123,008 + -2.6 123,008 + -0.1 123,008 + -1.1 123,008 + +0.2 123,008 + +0.7 123,008 + +1.4 123,008 + -0.7 123,008 + -0.7 123,008 + -0.5 123,008 + +0.5 123,008 + +0.5 123,009 - -1.2 123,009 - -1.1 123,009 - -1.2 123,009 - -0.4 123,009 - -0.8 123,009 - -0.2 123,009 - +1.1 123,009 - +1.9 123,009 - -0.3 123,009 - +1.0 123,009 - -1.3 123,010 + -0.5 123,010 + -1.2 123,010 + +0.3 123,010 + +0.5 123,010 + -0.2 123,010 + -0.5 123,011 - -1.8 123,011 - -2.0 123,011 - +1.1 123,011 - -0.9 123,011 - -0.9 123,011 - -0.9 123,011 - -0.5 123,011 - -1.5 123,011 - -1.9 123,011 - -0.7 123,259 + MPMX19_05431 0.18 -0.2 123,260 - MPMX19_05431 0.18 -0.5 123,260 - MPMX19_05431 0.18 -2.6 123,260 - MPMX19_05431 0.18 -0.8 123,260 - MPMX19_05431 0.18 -0.9 123,436 + MPMX19_05431 0.35 +0.7 123,436 + MPMX19_05431 0.35 -0.7 123,436 + MPMX19_05431 0.35 -0.9 123,436 + MPMX19_05431 0.35 -1.1 123,436 + MPMX19_05431 0.35 -0.1 123,436 + MPMX19_05431 0.35 -2.3 123,436 + MPMX19_05431 0.35 -0.7 123,436 + MPMX19_05431 0.35 -0.7 123,436 + MPMX19_05431 0.35 -0.1 123,436 + MPMX19_05431 0.35 -0.2 123,436 + MPMX19_05431 0.35 -0.9 123,436 + MPMX19_05431 0.35 +0.1 123,437 - MPMX19_05431 0.35 -0.1 123,437 - MPMX19_05431 0.35 -1.3 123,437 - MPMX19_05431 0.35 -0.9 123,437 - MPMX19_05431 0.35 -1.1 123,437 - MPMX19_05431 0.35 -0.5 123,437 - MPMX19_05431 0.35 -0.9 123,437 - MPMX19_05431 0.35 -0.9 123,437 - MPMX19_05431 0.35 +0.5 123,437 - MPMX19_05431 0.35 -1.2 123,437 - MPMX19_05431 0.35 -0.7 123,437 - MPMX19_05431 0.35 -0.5 123,438 + MPMX19_05431 0.35 -1.2 123,438 + MPMX19_05431 0.35 +0.2 123,438 + MPMX19_05431 0.35 +1.4 123,438 + MPMX19_05431 0.35 -0.5 123,438 + MPMX19_05431 0.35 -0.6 123,438 + MPMX19_05431 0.35 -0.8 123,439 - MPMX19_05431 0.35 -1.5 123,439 - MPMX19_05431 0.35 -1.6 123,535 + MPMX19_05431 0.44 -1.2 123,535 + MPMX19_05431 0.44 -0.5 123,535 + MPMX19_05431 0.44 +0.0 123,535 + MPMX19_05431 0.44 +0.3 123,535 + MPMX19_05431 0.44 -1.2 123,535 + MPMX19_05431 0.44 +1.9 123,535 + MPMX19_05431 0.44 -0.9 123,535 + MPMX19_05431 0.44 -0.6 123,535 + MPMX19_05431 0.44 -0.2 123,535 + MPMX19_05431 0.44 +0.3 123,536 - MPMX19_05431 0.44 +0.3 123,536 - MPMX19_05431 0.44 +0.2 123,536 - MPMX19_05431 0.44 -1.4 123,536 - MPMX19_05431 0.44 -0.8 123,536 - MPMX19_05431 0.44 -1.5 123,536 - MPMX19_05431 0.44 -0.7 123,631 + MPMX19_05431 0.54 -0.4 123,631 + MPMX19_05431 0.54 -0.2 123,631 + MPMX19_05431 0.54 -0.1 123,631 + MPMX19_05431 0.54 -1.6 123,631 + MPMX19_05431 0.54 -1.6 123,631 + MPMX19_05431 0.54 -0.8 123,631 + MPMX19_05431 0.54 -0.0 123,631 + MPMX19_05431 0.54 -1.2 123,631 + MPMX19_05431 0.54 +0.8 123,631 + MPMX19_05431 0.54 -0.5 123,631 + MPMX19_05431 0.54 -1.4 123,631 + MPMX19_05431 0.54 -2.2 123,632 - MPMX19_05431 0.54 -0.8 123,632 - MPMX19_05431 0.54 +0.2 123,632 - MPMX19_05431 0.54 -0.3 123,632 - MPMX19_05431 0.54 -0.5 123,632 - MPMX19_05431 0.54 -0.9 123,632 - MPMX19_05431 0.54 -0.6 123,632 - MPMX19_05431 0.54 -0.1 123,632 - MPMX19_05431 0.54 -0.5 123,632 - MPMX19_05431 0.54 -1.9 123,634 + MPMX19_05431 0.54 -1.9 123,634 + MPMX19_05431 0.54 +0.1 123,634 + MPMX19_05431 0.54 -1.7 123,634 + MPMX19_05431 0.54 -0.5 123,634 + MPMX19_05431 0.54 -0.1 123,634 + MPMX19_05431 0.54 -0.0 123,634 + MPMX19_05431 0.54 -0.1 123,634 + MPMX19_05431 0.54 -2.3 123,634 + MPMX19_05431 0.54 -0.7 123,634 + MPMX19_05431 0.54 +0.3 123,635 - MPMX19_05431 0.54 +1.3 123,635 - MPMX19_05431 0.54 -0.8 123,635 - MPMX19_05431 0.54 -1.3 123,635 - MPMX19_05431 0.54 -1.8 123,635 - MPMX19_05431 0.54 -0.5 123,635 - MPMX19_05431 0.54 -0.7 123,635 - MPMX19_05431 0.54 +0.5 123,655 + MPMX19_05431 0.56 -1.5 123,655 + MPMX19_05431 0.56 -0.7 123,655 + MPMX19_05431 0.56 +0.3 123,655 + MPMX19_05431 0.56 -0.1 123,656 - MPMX19_05431 0.56 -0.7 123,656 - MPMX19_05431 0.56 -1.2 123,656 - MPMX19_05431 0.56 -0.6 123,656 - MPMX19_05431 0.56 -0.2 123,656 - MPMX19_05431 0.56 -0.7 123,656 - MPMX19_05431 0.56 +0.1 123,656 - MPMX19_05431 0.56 +0.9 123,656 - MPMX19_05431 0.56 -0.1 123,656 - MPMX19_05431 0.56 -0.1 123,656 - MPMX19_05431 0.56 -0.6 123,656 - MPMX19_05431 0.56 +2.1 123,656 - MPMX19_05431 0.56 -0.9 123,829 + MPMX19_05431 0.73 -0.5 123,829 + MPMX19_05431 0.73 -1.3 123,830 - MPMX19_05431 0.73 -0.9 123,830 - MPMX19_05431 0.73 +0.1 123,830 - MPMX19_05431 0.73 +0.1 124,054 + -1.5 124,054 + +0.3 124,054 + -0.7 124,054 + +0.1 124,054 + -1.3 124,055 - -2.5 124,057 + -0.9 124,209 + -0.5 124,210 - +1.1 124,210 - -1.0 124,342 - -1.5 124,518 + MPMX19_05432 0.33 -1.0 124,518 + MPMX19_05432 0.33 +0.5 124,518 + MPMX19_05432 0.33 -0.9 124,519 - MPMX19_05432 0.33 -0.3 124,519 - MPMX19_05432 0.33 -0.9 124,519 - MPMX19_05432 0.33 -0.8 124,563 + MPMX19_05432 0.40 -1.0 124,563 + MPMX19_05432 0.40 -1.4 124,563 + MPMX19_05432 0.40 +0.8 124,563 + MPMX19_05432 0.40 -2.5 124,563 + MPMX19_05432 0.40 -0.5 124,563 + MPMX19_05432 0.40 -0.3 124,564 - MPMX19_05432 0.40 +0.8 124,582 - MPMX19_05432 0.43 -0.9 124,582 - MPMX19_05432 0.43 -0.5 124,837 - MPMX19_05432 0.81 -1.3 124,959 + +0.5 124,959 + -0.7 124,959 + -1.7 124,960 - -0.7 125,018 + +0.0
Or see this region's nucleotide sequence