Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05408

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05407 and MPMX19_05408 overlap by 4 nucleotidesMPMX19_05408 and MPMX19_05409 are separated by 268 nucleotides MPMX19_05407: MPMX19_05407 - D-inositol-3-phosphate glycosyltransferase, at 87,009 to 88,319 _05407 MPMX19_05408: MPMX19_05408 - hypothetical protein, at 88,316 to 89,629 _05408 MPMX19_05409: MPMX19_05409 - hypothetical protein, at 89,898 to 91,097 _05409 Position (kb) 88 89 90Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 87.517 kb on + strand, within MPMX19_05407at 87.518 kb on - strand, within MPMX19_05407at 87.518 kb on - strand, within MPMX19_05407at 87.518 kb on - strand, within MPMX19_05407at 87.518 kb on - strand, within MPMX19_05407at 87.518 kb on - strand, within MPMX19_05407at 87.518 kb on - strand, within MPMX19_05407at 87.646 kb on + strand, within MPMX19_05407at 87.647 kb on - strand, within MPMX19_05407at 87.647 kb on - strand, within MPMX19_05407at 87.647 kb on - strand, within MPMX19_05407at 87.647 kb on - strand, within MPMX19_05407at 87.647 kb on - strand, within MPMX19_05407at 87.647 kb on - strand, within MPMX19_05407at 87.647 kb on - strand, within MPMX19_05407at 87.647 kb on - strand, within MPMX19_05407at 87.829 kb on + strand, within MPMX19_05407at 87.829 kb on + strand, within MPMX19_05407at 87.829 kb on + strand, within MPMX19_05407at 87.829 kb on + strand, within MPMX19_05407at 87.829 kb on + strand, within MPMX19_05407at 87.829 kb on + strand, within MPMX19_05407at 87.830 kb on - strand, within MPMX19_05407at 87.830 kb on - strand, within MPMX19_05407at 87.830 kb on - strand, within MPMX19_05407at 87.830 kb on - strand, within MPMX19_05407at 87.830 kb on - strand, within MPMX19_05407at 87.830 kb on - strand, within MPMX19_05407at 87.868 kb on + strand, within MPMX19_05407at 87.868 kb on + strand, within MPMX19_05407at 87.868 kb on + strand, within MPMX19_05407at 87.868 kb on + strand, within MPMX19_05407at 87.869 kb on - strand, within MPMX19_05407at 87.869 kb on - strand, within MPMX19_05407at 87.869 kb on - strand, within MPMX19_05407at 87.869 kb on - strand, within MPMX19_05407at 87.869 kb on - strand, within MPMX19_05407at 87.869 kb on - strand, within MPMX19_05407at 87.869 kb on - strand, within MPMX19_05407at 88.061 kb on - strand, within MPMX19_05407at 88.061 kb on - strand, within MPMX19_05407at 88.061 kb on - strand, within MPMX19_05407at 88.061 kb on - strand, within MPMX19_05407at 88.061 kb on - strand, within MPMX19_05407at 88.072 kb on + strand, within MPMX19_05407at 88.072 kb on + strand, within MPMX19_05407at 88.072 kb on + strand, within MPMX19_05407at 88.217 kb on - strandat 88.680 kb on + strand, within MPMX19_05408at 88.680 kb on + strand, within MPMX19_05408at 88.680 kb on + strand, within MPMX19_05408at 88.716 kb on + strand, within MPMX19_05408at 88.716 kb on + strand, within MPMX19_05408at 88.716 kb on + strand, within MPMX19_05408at 88.716 kb on + strand, within MPMX19_05408at 88.716 kb on + strand, within MPMX19_05408at 88.717 kb on - strand, within MPMX19_05408at 88.825 kb on - strand, within MPMX19_05408at 88.866 kb on + strand, within MPMX19_05408at 88.866 kb on + strand, within MPMX19_05408at 88.932 kb on + strand, within MPMX19_05408at 88.932 kb on + strand, within MPMX19_05408at 88.932 kb on + strand, within MPMX19_05408at 88.932 kb on + strand, within MPMX19_05408at 88.932 kb on + strand, within MPMX19_05408at 88.932 kb on + strand, within MPMX19_05408at 88.932 kb on + strand, within MPMX19_05408at 88.932 kb on + strand, within MPMX19_05408at 88.932 kb on + strand, within MPMX19_05408at 88.932 kb on + strand, within MPMX19_05408at 88.933 kb on - strand, within MPMX19_05408at 88.933 kb on - strand, within MPMX19_05408at 88.933 kb on - strand, within MPMX19_05408at 88.933 kb on - strand, within MPMX19_05408at 88.933 kb on - strand, within MPMX19_05408at 89.002 kb on - strand, within MPMX19_05408at 89.010 kb on + strand, within MPMX19_05408at 89.010 kb on + strand, within MPMX19_05408at 89.010 kb on + strand, within MPMX19_05408at 89.010 kb on + strand, within MPMX19_05408at 89.010 kb on + strand, within MPMX19_05408at 89.011 kb on - strand, within MPMX19_05408at 89.011 kb on - strand, within MPMX19_05408at 89.064 kb on + strand, within MPMX19_05408at 89.065 kb on - strand, within MPMX19_05408at 89.065 kb on - strand, within MPMX19_05408at 89.065 kb on - strand, within MPMX19_05408at 89.082 kb on + strand, within MPMX19_05408at 89.082 kb on + strand, within MPMX19_05408at 89.082 kb on + strand, within MPMX19_05408at 89.082 kb on + strand, within MPMX19_05408at 89.082 kb on + strand, within MPMX19_05408at 89.082 kb on + strand, within MPMX19_05408at 89.083 kb on - strand, within MPMX19_05408at 89.083 kb on - strand, within MPMX19_05408at 89.083 kb on - strand, within MPMX19_05408at 89.083 kb on - strand, within MPMX19_05408at 89.083 kb on - strand, within MPMX19_05408at 89.083 kb on - strand, within MPMX19_05408at 89.100 kb on + strand, within MPMX19_05408at 89.100 kb on + strand, within MPMX19_05408at 89.100 kb on + strand, within MPMX19_05408at 89.100 kb on + strand, within MPMX19_05408at 89.101 kb on - strand, within MPMX19_05408at 89.101 kb on - strand, within MPMX19_05408at 89.101 kb on - strand, within MPMX19_05408at 89.101 kb on - strand, within MPMX19_05408at 89.101 kb on - strand, within MPMX19_05408at 89.103 kb on + strand, within MPMX19_05408at 89.103 kb on + strand, within MPMX19_05408at 89.103 kb on + strand, within MPMX19_05408at 89.103 kb on + strand, within MPMX19_05408at 89.104 kb on - strand, within MPMX19_05408at 89.104 kb on - strand, within MPMX19_05408at 89.104 kb on - strand, within MPMX19_05408at 89.374 kb on - strand, within MPMX19_05408at 89.562 kb on + strandat 89.562 kb on + strandat 89.562 kb on + strandat 89.562 kb on + strandat 89.562 kb on + strandat 89.562 kb on + strandat 89.562 kb on + strandat 89.562 kb on + strandat 89.563 kb on - strandat 89.563 kb on - strandat 89.563 kb on - strandat 89.563 kb on - strandat 89.849 kb on - strandat 89.850 kb on + strandat 89.851 kb on - strandat 89.911 kb on + strandat 89.911 kb on + strandat 89.911 kb on + strandat 89.911 kb on + strandat 89.912 kb on - strandat 89.912 kb on - strandat 89.912 kb on - strandat 89.912 kb on - strandat 89.912 kb on - strandat 90.004 kb on + strandat 90.004 kb on + strandat 90.004 kb on + strandat 90.005 kb on - strandat 90.005 kb on - strandat 90.005 kb on - strandat 90.005 kb on - strandat 90.078 kb on + strand, within MPMX19_05409at 90.079 kb on - strand, within MPMX19_05409at 90.079 kb on - strand, within MPMX19_05409at 90.079 kb on - strand, within MPMX19_05409at 90.449 kb on - strand, within MPMX19_05409at 90.449 kb on - strand, within MPMX19_05409

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
87,517 + MPMX19_05407 0.39 -0.7
87,518 - MPMX19_05407 0.39 -2.2
87,518 - MPMX19_05407 0.39 -1.1
87,518 - MPMX19_05407 0.39 +1.1
87,518 - MPMX19_05407 0.39 +2.1
87,518 - MPMX19_05407 0.39 +0.5
87,518 - MPMX19_05407 0.39 +0.3
87,646 + MPMX19_05407 0.49 +0.1
87,647 - MPMX19_05407 0.49 -0.7
87,647 - MPMX19_05407 0.49 -1.2
87,647 - MPMX19_05407 0.49 -0.7
87,647 - MPMX19_05407 0.49 -0.2
87,647 - MPMX19_05407 0.49 -1.7
87,647 - MPMX19_05407 0.49 -0.5
87,647 - MPMX19_05407 0.49 -2.5
87,647 - MPMX19_05407 0.49 -0.1
87,829 + MPMX19_05407 0.63 +0.7
87,829 + MPMX19_05407 0.63 -0.9
87,829 + MPMX19_05407 0.63 -1.5
87,829 + MPMX19_05407 0.63 +0.2
87,829 + MPMX19_05407 0.63 +0.3
87,829 + MPMX19_05407 0.63 -0.8
87,830 - MPMX19_05407 0.63 -0.7
87,830 - MPMX19_05407 0.63 +0.2
87,830 - MPMX19_05407 0.63 -0.2
87,830 - MPMX19_05407 0.63 -0.4
87,830 - MPMX19_05407 0.63 -0.1
87,830 - MPMX19_05407 0.63 +0.8
87,868 + MPMX19_05407 0.66 -0.5
87,868 + MPMX19_05407 0.66 +0.9
87,868 + MPMX19_05407 0.66 +0.1
87,868 + MPMX19_05407 0.66 +1.1
87,869 - MPMX19_05407 0.66 -0.6
87,869 - MPMX19_05407 0.66 -1.7
87,869 - MPMX19_05407 0.66 -0.9
87,869 - MPMX19_05407 0.66 -0.9
87,869 - MPMX19_05407 0.66 -1.1
87,869 - MPMX19_05407 0.66 -0.2
87,869 - MPMX19_05407 0.66 +0.7
88,061 - MPMX19_05407 0.80 +0.1
88,061 - MPMX19_05407 0.80 -0.5
88,061 - MPMX19_05407 0.80 -0.1
88,061 - MPMX19_05407 0.80 -1.2
88,061 - MPMX19_05407 0.80 -0.9
88,072 + MPMX19_05407 0.81 +0.5
88,072 + MPMX19_05407 0.81 +0.3
88,072 + MPMX19_05407 0.81 +0.7
88,217 - -1.1
88,680 + MPMX19_05408 0.28 +0.5
88,680 + MPMX19_05408 0.28 -0.5
88,680 + MPMX19_05408 0.28 +0.2
88,716 + MPMX19_05408 0.30 -0.4
88,716 + MPMX19_05408 0.30 +1.5
88,716 + MPMX19_05408 0.30 -0.5
88,716 + MPMX19_05408 0.30 +0.1
88,716 + MPMX19_05408 0.30 -0.1
88,717 - MPMX19_05408 0.31 -1.1
88,825 - MPMX19_05408 0.39 -0.9
88,866 + MPMX19_05408 0.42 +0.9
88,866 + MPMX19_05408 0.42 -0.5
88,932 + MPMX19_05408 0.47 +0.1
88,932 + MPMX19_05408 0.47 -1.5
88,932 + MPMX19_05408 0.47 -0.9
88,932 + MPMX19_05408 0.47 +0.3
88,932 + MPMX19_05408 0.47 -1.2
88,932 + MPMX19_05408 0.47 -1.9
88,932 + MPMX19_05408 0.47 +1.3
88,932 + MPMX19_05408 0.47 -1.3
88,932 + MPMX19_05408 0.47 -0.2
88,932 + MPMX19_05408 0.47 +0.1
88,933 - MPMX19_05408 0.47 +0.9
88,933 - MPMX19_05408 0.47 -2.2
88,933 - MPMX19_05408 0.47 +1.3
88,933 - MPMX19_05408 0.47 -0.5
88,933 - MPMX19_05408 0.47 -0.5
89,002 - MPMX19_05408 0.52 +0.1
89,010 + MPMX19_05408 0.53 +0.1
89,010 + MPMX19_05408 0.53 +0.9
89,010 + MPMX19_05408 0.53 -2.2
89,010 + MPMX19_05408 0.53 -0.8
89,010 + MPMX19_05408 0.53 -0.9
89,011 - MPMX19_05408 0.53 -0.5
89,011 - MPMX19_05408 0.53 -1.1
89,064 + MPMX19_05408 0.57 -1.5
89,065 - MPMX19_05408 0.57 +0.4
89,065 - MPMX19_05408 0.57 -0.9
89,065 - MPMX19_05408 0.57 -1.5
89,082 + MPMX19_05408 0.58 -0.7
89,082 + MPMX19_05408 0.58 -0.5
89,082 + MPMX19_05408 0.58 -1.4
89,082 + MPMX19_05408 0.58 -1.2
89,082 + MPMX19_05408 0.58 -0.2
89,082 + MPMX19_05408 0.58 +1.5
89,083 - MPMX19_05408 0.58 -1.5
89,083 - MPMX19_05408 0.58 -1.4
89,083 - MPMX19_05408 0.58 -1.3
89,083 - MPMX19_05408 0.58 -1.3
89,083 - MPMX19_05408 0.58 -0.8
89,083 - MPMX19_05408 0.58 -0.1
89,100 + MPMX19_05408 0.60 -2.8
89,100 + MPMX19_05408 0.60 -0.1
89,100 + MPMX19_05408 0.60 +0.1
89,100 + MPMX19_05408 0.60 +0.5
89,101 - MPMX19_05408 0.60 -0.7
89,101 - MPMX19_05408 0.60 -1.3
89,101 - MPMX19_05408 0.60 -0.5
89,101 - MPMX19_05408 0.60 -1.2
89,101 - MPMX19_05408 0.60 +0.1
89,103 + MPMX19_05408 0.60 +0.1
89,103 + MPMX19_05408 0.60 -0.6
89,103 + MPMX19_05408 0.60 -1.7
89,103 + MPMX19_05408 0.60 +0.9
89,104 - MPMX19_05408 0.60 +1.1
89,104 - MPMX19_05408 0.60 -1.1
89,104 - MPMX19_05408 0.60 -2.0
89,374 - MPMX19_05408 0.81 +0.4
89,562 + -0.5
89,562 + -0.2
89,562 + -0.2
89,562 + +0.5
89,562 + -0.5
89,562 + -0.9
89,562 + -0.7
89,562 + -0.5
89,563 - -1.1
89,563 - +0.5
89,563 - -1.3
89,563 - -0.1
89,849 - -0.6
89,850 + -2.2
89,851 - -0.6
89,911 + -0.7
89,911 + -0.8
89,911 + +3.7
89,911 + +0.7
89,912 - +0.1
89,912 - +1.1
89,912 - +0.3
89,912 - -1.7
89,912 - +0.9
90,004 + +0.3
90,004 + -0.5
90,004 + -2.6
90,005 - -1.4
90,005 - -1.1
90,005 - -0.3
90,005 - -0.7
90,078 + MPMX19_05409 0.15 +0.5
90,079 - MPMX19_05409 0.15 -0.3
90,079 - MPMX19_05409 0.15 -0.8
90,079 - MPMX19_05409 0.15 -0.2
90,449 - MPMX19_05409 0.46 -0.5
90,449 - MPMX19_05409 0.46 +0.3

Or see this region's nucleotide sequence