Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05393

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05392 and MPMX19_05393 are separated by 321 nucleotidesMPMX19_05393 and MPMX19_05394 are separated by 210 nucleotides MPMX19_05392: MPMX19_05392 - hypothetical protein, at 70,788 to 71,861 _05392 MPMX19_05393: MPMX19_05393 - hypothetical protein, at 72,183 to 73,124 _05393 MPMX19_05394: MPMX19_05394 - L-cystine-binding protein FliY, at 73,335 to 74,138 _05394 Position (kb) 72 73 74Strain fitness (log2 ratio) -2 -1 0 1 2at 71.229 kb on - strand, within MPMX19_05392at 71.229 kb on - strand, within MPMX19_05392at 71.230 kb on + strand, within MPMX19_05392at 71.231 kb on - strand, within MPMX19_05392at 71.231 kb on - strand, within MPMX19_05392at 71.277 kb on + strand, within MPMX19_05392at 71.277 kb on + strand, within MPMX19_05392at 71.278 kb on - strand, within MPMX19_05392at 71.278 kb on - strand, within MPMX19_05392at 71.373 kb on + strand, within MPMX19_05392at 71.373 kb on + strand, within MPMX19_05392at 71.511 kb on - strand, within MPMX19_05392at 71.538 kb on + strand, within MPMX19_05392at 71.539 kb on - strand, within MPMX19_05392at 71.650 kb on + strand, within MPMX19_05392at 71.651 kb on - strand, within MPMX19_05392at 71.736 kb on - strand, within MPMX19_05392at 71.765 kb on + strandat 71.765 kb on + strandat 71.788 kb on + strandat 71.789 kb on - strandat 71.842 kb on + strandat 71.946 kb on - strandat 71.953 kb on + strandat 71.953 kb on + strandat 71.954 kb on - strandat 71.967 kb on + strandat 71.967 kb on + strandat 71.968 kb on - strandat 71.970 kb on + strandat 71.970 kb on + strandat 71.971 kb on - strandat 72.614 kb on - strand, within MPMX19_05393at 72.614 kb on - strand, within MPMX19_05393at 72.614 kb on - strand, within MPMX19_05393at 72.892 kb on + strand, within MPMX19_05393at 72.893 kb on - strand, within MPMX19_05393at 73.022 kb on + strand, within MPMX19_05393at 73.023 kb on - strand, within MPMX19_05393at 73.023 kb on - strand, within MPMX19_05393at 73.039 kb on + strandat 73.039 kb on + strandat 73.194 kb on + strandat 73.194 kb on + strandat 73.194 kb on + strandat 73.194 kb on + strandat 73.194 kb on + strandat 73.194 kb on + strandat 73.194 kb on + strandat 73.194 kb on + strandat 73.194 kb on + strandat 73.194 kb on + strandat 73.195 kb on - strandat 73.195 kb on - strandat 73.195 kb on - strandat 73.195 kb on - strandat 73.195 kb on - strandat 73.195 kb on - strandat 73.195 kb on - strandat 73.195 kb on - strandat 73.195 kb on - strandat 73.195 kb on - strandat 73.195 kb on - strandat 73.195 kb on - strandat 73.232 kb on + strandat 73.232 kb on + strandat 73.232 kb on + strandat 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.416 kb on + strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.417 kb on - strand, within MPMX19_05394at 73.530 kb on + strand, within MPMX19_05394at 73.531 kb on - strand, within MPMX19_05394at 73.531 kb on - strand, within MPMX19_05394at 73.531 kb on - strand, within MPMX19_05394at 73.617 kb on + strand, within MPMX19_05394at 73.617 kb on + strand, within MPMX19_05394at 73.617 kb on + strand, within MPMX19_05394at 73.618 kb on - strand, within MPMX19_05394at 73.618 kb on - strand, within MPMX19_05394at 73.618 kb on - strand, within MPMX19_05394at 73.618 kb on - strand, within MPMX19_05394at 73.618 kb on - strand, within MPMX19_05394at 73.618 kb on - strand, within MPMX19_05394at 73.618 kb on - strand, within MPMX19_05394at 73.618 kb on - strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.716 kb on + strand, within MPMX19_05394at 73.717 kb on - strand, within MPMX19_05394at 73.717 kb on - strand, within MPMX19_05394at 73.717 kb on - strand, within MPMX19_05394at 73.717 kb on - strand, within MPMX19_05394at 73.717 kb on - strand, within MPMX19_05394at 73.717 kb on - strand, within MPMX19_05394at 73.717 kb on - strand, within MPMX19_05394at 73.857 kb on + strand, within MPMX19_05394at 73.857 kb on + strand, within MPMX19_05394

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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71,229 - MPMX19_05392 0.41 -0.9
71,229 - MPMX19_05392 0.41 -1.9
71,230 + MPMX19_05392 0.41 +0.1
71,231 - MPMX19_05392 0.41 -1.3
71,231 - MPMX19_05392 0.41 -1.6
71,277 + MPMX19_05392 0.46 +0.5
71,277 + MPMX19_05392 0.46 -0.4
71,278 - MPMX19_05392 0.46 -0.2
71,278 - MPMX19_05392 0.46 -0.5
71,373 + MPMX19_05392 0.54 -0.2
71,373 + MPMX19_05392 0.54 +0.2
71,511 - MPMX19_05392 0.67 +0.5
71,538 + MPMX19_05392 0.70 -0.7
71,539 - MPMX19_05392 0.70 +1.4
71,650 + MPMX19_05392 0.80 +1.4
71,651 - MPMX19_05392 0.80 +0.8
71,736 - MPMX19_05392 0.88 +0.4
71,765 + -0.2
71,765 + -0.7
71,788 + -2.0
71,789 - +1.1
71,842 + -2.1
71,946 - -0.8
71,953 + -1.3
71,953 + -1.5
71,954 - -1.3
71,967 + +0.8
71,967 + -1.3
71,968 - -0.6
71,970 + -0.8
71,970 + -0.5
71,971 - +0.1
72,614 - MPMX19_05393 0.46 -1.2
72,614 - MPMX19_05393 0.46 +0.1
72,614 - MPMX19_05393 0.46 +0.3
72,892 + MPMX19_05393 0.75 -1.4
72,893 - MPMX19_05393 0.75 -0.2
73,022 + MPMX19_05393 0.89 -0.7
73,023 - MPMX19_05393 0.89 -1.5
73,023 - MPMX19_05393 0.89 -0.2
73,039 + -0.8
73,039 + -0.7
73,194 + -1.1
73,194 + -1.3
73,194 + -1.1
73,194 + -0.1
73,194 + -1.1
73,194 + -0.1
73,194 + -0.7
73,194 + +0.3
73,194 + -0.3
73,194 + -1.2
73,195 - -1.8
73,195 - -0.2
73,195 - -1.4
73,195 - -0.9
73,195 - -1.1
73,195 - -1.2
73,195 - -0.7
73,195 - -1.1
73,195 - +0.5
73,195 - -0.1
73,195 - +0.9
73,195 - -0.6
73,232 + -0.7
73,232 + +0.3
73,232 + -0.7
73,416 + MPMX19_05394 0.10 -1.0
73,416 + MPMX19_05394 0.10 -1.6
73,416 + MPMX19_05394 0.10 -1.7
73,416 + MPMX19_05394 0.10 -1.5
73,416 + MPMX19_05394 0.10 +0.1
73,416 + MPMX19_05394 0.10 +0.6
73,416 + MPMX19_05394 0.10 +0.1
73,416 + MPMX19_05394 0.10 -0.5
73,416 + MPMX19_05394 0.10 +0.8
73,416 + MPMX19_05394 0.10 -1.3
73,416 + MPMX19_05394 0.10 +0.8
73,416 + MPMX19_05394 0.10 -1.2
73,416 + MPMX19_05394 0.10 -2.5
73,416 + MPMX19_05394 0.10 -1.3
73,416 + MPMX19_05394 0.10 -0.5
73,416 + MPMX19_05394 0.10 +0.5
73,416 + MPMX19_05394 0.10 -1.0
73,416 + MPMX19_05394 0.10 -0.2
73,416 + MPMX19_05394 0.10 -0.1
73,416 + MPMX19_05394 0.10 +0.9
73,417 - MPMX19_05394 0.10 -0.0
73,417 - MPMX19_05394 0.10 -1.2
73,417 - MPMX19_05394 0.10 +0.5
73,417 - MPMX19_05394 0.10 +0.4
73,417 - MPMX19_05394 0.10 +1.1
73,417 - MPMX19_05394 0.10 -0.5
73,417 - MPMX19_05394 0.10 -0.7
73,417 - MPMX19_05394 0.10 +0.5
73,417 - MPMX19_05394 0.10 -1.1
73,417 - MPMX19_05394 0.10 -0.5
73,417 - MPMX19_05394 0.10 -0.7
73,530 + MPMX19_05394 0.24 -2.1
73,531 - MPMX19_05394 0.24 +0.1
73,531 - MPMX19_05394 0.24 -0.8
73,531 - MPMX19_05394 0.24 -0.5
73,617 + MPMX19_05394 0.35 -1.6
73,617 + MPMX19_05394 0.35 +0.3
73,617 + MPMX19_05394 0.35 +0.3
73,618 - MPMX19_05394 0.35 -0.7
73,618 - MPMX19_05394 0.35 -1.1
73,618 - MPMX19_05394 0.35 +0.1
73,618 - MPMX19_05394 0.35 -0.6
73,618 - MPMX19_05394 0.35 -0.2
73,618 - MPMX19_05394 0.35 +0.8
73,618 - MPMX19_05394 0.35 -1.5
73,618 - MPMX19_05394 0.35 +1.6
73,716 + MPMX19_05394 0.47 -1.7
73,716 + MPMX19_05394 0.47 -1.3
73,716 + MPMX19_05394 0.47 +1.1
73,716 + MPMX19_05394 0.47 -1.6
73,716 + MPMX19_05394 0.47 +0.1
73,716 + MPMX19_05394 0.47 +2.5
73,716 + MPMX19_05394 0.47 -0.7
73,716 + MPMX19_05394 0.47 -0.4
73,716 + MPMX19_05394 0.47 +0.0
73,716 + MPMX19_05394 0.47 -1.2
73,716 + MPMX19_05394 0.47 -0.8
73,717 - MPMX19_05394 0.48 +0.9
73,717 - MPMX19_05394 0.48 +2.1
73,717 - MPMX19_05394 0.48 -2.1
73,717 - MPMX19_05394 0.48 -1.1
73,717 - MPMX19_05394 0.48 -0.2
73,717 - MPMX19_05394 0.48 -0.7
73,717 - MPMX19_05394 0.48 -1.5
73,857 + MPMX19_05394 0.65 -1.5
73,857 + MPMX19_05394 0.65 -1.3

Or see this region's nucleotide sequence