Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05334

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05333 and MPMX19_05334 are separated by 161 nucleotidesMPMX19_05334 and MPMX19_05335 overlap by 4 nucleotides MPMX19_05333: MPMX19_05333 - Thymidine phosphorylase, at 1,185 to 2,675 _05333 MPMX19_05334: MPMX19_05334 - hypothetical protein, at 2,837 to 4,468 _05334 MPMX19_05335: MPMX19_05335 - hypothetical protein, at 4,465 to 5,736 _05335 Position (kb) 2 3 4 5Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2.481 kb on + strand, within MPMX19_05333at 2.496 kb on - strand, within MPMX19_05333at 2.803 kb on + strandat 2.987 kb on + strandat 2.987 kb on + strandat 2.987 kb on + strandat 2.987 kb on + strandat 2.987 kb on + strandat 2.988 kb on - strandat 2.988 kb on - strandat 2.988 kb on - strandat 2.988 kb on - strandat 2.988 kb on - strandat 3.104 kb on + strand, within MPMX19_05334at 3.104 kb on + strand, within MPMX19_05334at 3.104 kb on + strand, within MPMX19_05334at 3.105 kb on - strand, within MPMX19_05334at 3.105 kb on - strand, within MPMX19_05334at 3.105 kb on - strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.158 kb on + strand, within MPMX19_05334at 3.158 kb on + strand, within MPMX19_05334at 3.158 kb on + strand, within MPMX19_05334at 3.158 kb on + strand, within MPMX19_05334at 3.158 kb on + strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.233 kb on + strand, within MPMX19_05334at 3.233 kb on + strand, within MPMX19_05334at 3.233 kb on + strand, within MPMX19_05334at 3.233 kb on + strand, within MPMX19_05334at 3.233 kb on + strand, within MPMX19_05334at 3.233 kb on + strand, within MPMX19_05334at 3.233 kb on + strand, within MPMX19_05334at 3.233 kb on + strand, within MPMX19_05334at 3.233 kb on + strand, within MPMX19_05334at 3.234 kb on - strand, within MPMX19_05334at 3.234 kb on - strand, within MPMX19_05334at 3.234 kb on - strand, within MPMX19_05334at 3.234 kb on - strand, within MPMX19_05334at 3.234 kb on - strand, within MPMX19_05334at 3.234 kb on - strand, within MPMX19_05334at 3.234 kb on - strand, within MPMX19_05334at 3.234 kb on - strand, within MPMX19_05334at 3.284 kb on + strand, within MPMX19_05334at 3.284 kb on + strand, within MPMX19_05334at 3.284 kb on + strand, within MPMX19_05334at 3.284 kb on + strand, within MPMX19_05334at 3.284 kb on + strand, within MPMX19_05334at 3.285 kb on - strand, within MPMX19_05334at 3.285 kb on - strand, within MPMX19_05334at 3.512 kb on + strand, within MPMX19_05334at 3.512 kb on + strand, within MPMX19_05334at 3.512 kb on + strand, within MPMX19_05334at 3.512 kb on + strand, within MPMX19_05334at 3.512 kb on + strand, within MPMX19_05334at 3.512 kb on + strand, within MPMX19_05334at 3.512 kb on + strand, within MPMX19_05334at 3.512 kb on + strand, within MPMX19_05334at 3.513 kb on - strand, within MPMX19_05334at 3.513 kb on - strand, within MPMX19_05334at 3.513 kb on - strand, within MPMX19_05334at 3.513 kb on - strand, within MPMX19_05334at 3.513 kb on - strand, within MPMX19_05334at 3.513 kb on - strand, within MPMX19_05334at 3.513 kb on - strand, within MPMX19_05334at 3.513 kb on - strand, within MPMX19_05334at 3.650 kb on + strand, within MPMX19_05334at 3.650 kb on + strand, within MPMX19_05334at 3.650 kb on + strand, within MPMX19_05334at 3.650 kb on + strand, within MPMX19_05334at 3.650 kb on + strand, within MPMX19_05334at 3.650 kb on + strand, within MPMX19_05334at 3.650 kb on + strand, within MPMX19_05334at 3.651 kb on - strand, within MPMX19_05334at 3.651 kb on - strand, within MPMX19_05334at 3.651 kb on - strand, within MPMX19_05334at 3.651 kb on - strand, within MPMX19_05334at 3.956 kb on + strand, within MPMX19_05334at 4.064 kb on + strand, within MPMX19_05334at 4.064 kb on + strand, within MPMX19_05334at 4.064 kb on + strand, within MPMX19_05334at 4.064 kb on + strand, within MPMX19_05334at 4.064 kb on + strand, within MPMX19_05334at 4.065 kb on - strand, within MPMX19_05334at 4.065 kb on - strand, within MPMX19_05334at 4.334 kb on + strandat 4.334 kb on + strandat 4.334 kb on + strandat 4.334 kb on + strandat 4.335 kb on - strandat 4.335 kb on - strandat 4.531 kb on + strandat 4.531 kb on + strandat 4.532 kb on - strandat 4.532 kb on - strandat 4.532 kb on - strandat 4.627 kb on + strand, within MPMX19_05335at 4.627 kb on + strand, within MPMX19_05335at 4.627 kb on + strand, within MPMX19_05335at 4.627 kb on + strand, within MPMX19_05335at 4.627 kb on + strand, within MPMX19_05335at 4.628 kb on - strand, within MPMX19_05335at 4.628 kb on - strand, within MPMX19_05335at 4.628 kb on - strand, within MPMX19_05335at 4.628 kb on - strand, within MPMX19_05335at 4.628 kb on - strand, within MPMX19_05335at 4.628 kb on - strand, within MPMX19_05335at 4.628 kb on - strand, within MPMX19_05335at 4.628 kb on - strand, within MPMX19_05335at 5.054 kb on - strand, within MPMX19_05335at 5.128 kb on + strand, within MPMX19_05335at 5.128 kb on + strand, within MPMX19_05335at 5.128 kb on + strand, within MPMX19_05335at 5.128 kb on + strand, within MPMX19_05335at 5.128 kb on + strand, within MPMX19_05335at 5.128 kb on + strand, within MPMX19_05335at 5.128 kb on + strand, within MPMX19_05335at 5.128 kb on + strand, within MPMX19_05335at 5.128 kb on + strand, within MPMX19_05335at 5.128 kb on + strand, within MPMX19_05335at 5.128 kb on + strand, within MPMX19_05335at 5.128 kb on + strand, within MPMX19_05335at 5.128 kb on + strand, within MPMX19_05335at 5.128 kb on + strand, within MPMX19_05335at 5.128 kb on + strand, within MPMX19_05335at 5.128 kb on + strand, within MPMX19_05335at 5.128 kb on + strand, within MPMX19_05335at 5.128 kb on + strand, within MPMX19_05335at 5.128 kb on + strand, within MPMX19_05335at 5.129 kb on - strand, within MPMX19_05335at 5.129 kb on - strand, within MPMX19_05335at 5.129 kb on - strand, within MPMX19_05335at 5.129 kb on - strand, within MPMX19_05335at 5.129 kb on - strand, within MPMX19_05335at 5.129 kb on - strand, within MPMX19_05335at 5.129 kb on - strand, within MPMX19_05335at 5.129 kb on - strand, within MPMX19_05335at 5.129 kb on - strand, within MPMX19_05335at 5.129 kb on - strand, within MPMX19_05335at 5.129 kb on - strand, within MPMX19_05335at 5.129 kb on - strand, within MPMX19_05335at 5.129 kb on - strand, within MPMX19_05335at 5.129 kb on - strand, within MPMX19_05335at 5.129 kb on - strand, within MPMX19_05335at 5.129 kb on - strand, within MPMX19_05335at 5.129 kb on - strand, within MPMX19_05335at 5.350 kb on + strand, within MPMX19_05335at 5.350 kb on + strand, within MPMX19_05335at 5.350 kb on + strand, within MPMX19_05335at 5.351 kb on - strand, within MPMX19_05335at 5.351 kb on - strand, within MPMX19_05335at 5.351 kb on - strand, within MPMX19_05335at 5.351 kb on - strand, within MPMX19_05335at 5.389 kb on + strand, within MPMX19_05335at 5.389 kb on + strand, within MPMX19_05335at 5.389 kb on + strand, within MPMX19_05335at 5.389 kb on + strand, within MPMX19_05335at 5.389 kb on + strand, within MPMX19_05335at 5.389 kb on + strand, within MPMX19_05335at 5.389 kb on + strand, within MPMX19_05335at 5.389 kb on + strand, within MPMX19_05335at 5.389 kb on + strand, within MPMX19_05335at 5.389 kb on + strand, within MPMX19_05335at 5.389 kb on + strand, within MPMX19_05335at 5.389 kb on + strand, within MPMX19_05335at 5.390 kb on - strand, within MPMX19_05335at 5.390 kb on - strand, within MPMX19_05335at 5.390 kb on - strand, within MPMX19_05335at 5.390 kb on - strand, within MPMX19_05335at 5.390 kb on - strand, within MPMX19_05335at 5.390 kb on - strand, within MPMX19_05335at 5.390 kb on - strand, within MPMX19_05335at 5.390 kb on - strand, within MPMX19_05335at 5.390 kb on - strand, within MPMX19_05335at 5.390 kb on - strand, within MPMX19_05335at 5.390 kb on - strand, within MPMX19_05335at 5.390 kb on - strand, within MPMX19_05335at 5.390 kb on - strand, within MPMX19_05335at 5.390 kb on - strand, within MPMX19_05335at 5.390 kb on - strand, within MPMX19_05335at 5.390 kb on - strand, within MPMX19_05335

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
2,481 + MPMX19_05333 0.87 -0.9
2,496 - MPMX19_05333 0.88 -0.7
2,803 + -0.7
2,987 + +0.5
2,987 + +0.1
2,987 + +0.0
2,987 + -0.6
2,987 + -0.8
2,988 - -1.1
2,988 - +0.8
2,988 - -0.5
2,988 - -0.1
2,988 - +0.3
3,104 + MPMX19_05334 0.16 -1.5
3,104 + MPMX19_05334 0.16 +1.7
3,104 + MPMX19_05334 0.16 -1.0
3,105 - MPMX19_05334 0.16 -1.0
3,105 - MPMX19_05334 0.16 +0.5
3,105 - MPMX19_05334 0.16 -0.6
3,137 + MPMX19_05334 0.18 -0.1
3,137 + MPMX19_05334 0.18 -0.7
3,137 + MPMX19_05334 0.18 -1.3
3,137 + MPMX19_05334 0.18 -0.9
3,137 + MPMX19_05334 0.18 +1.0
3,137 + MPMX19_05334 0.18 -0.5
3,137 + MPMX19_05334 0.18 +0.2
3,137 + MPMX19_05334 0.18 -0.5
3,137 + MPMX19_05334 0.18 -0.5
3,137 + MPMX19_05334 0.18 +1.0
3,137 + MPMX19_05334 0.18 -0.2
3,137 + MPMX19_05334 0.18 +0.3
3,137 + MPMX19_05334 0.18 +1.4
3,137 + MPMX19_05334 0.18 -0.1
3,137 + MPMX19_05334 0.18 -1.8
3,138 - MPMX19_05334 0.18 -1.6
3,138 - MPMX19_05334 0.18 +0.1
3,138 - MPMX19_05334 0.18 -1.3
3,138 - MPMX19_05334 0.18 -0.9
3,138 - MPMX19_05334 0.18 -1.2
3,138 - MPMX19_05334 0.18 +1.1
3,138 - MPMX19_05334 0.18 -0.8
3,138 - MPMX19_05334 0.18 +0.1
3,138 - MPMX19_05334 0.18 -1.1
3,138 - MPMX19_05334 0.18 -1.3
3,138 - MPMX19_05334 0.18 +0.4
3,138 - MPMX19_05334 0.18 -1.3
3,138 - MPMX19_05334 0.18 -0.9
3,138 - MPMX19_05334 0.18 +1.2
3,138 - MPMX19_05334 0.18 +0.0
3,138 - MPMX19_05334 0.18 -0.2
3,138 - MPMX19_05334 0.18 -2.3
3,138 - MPMX19_05334 0.18 -1.8
3,158 + MPMX19_05334 0.20 -1.4
3,158 + MPMX19_05334 0.20 +0.1
3,158 + MPMX19_05334 0.20 -0.3
3,158 + MPMX19_05334 0.20 +0.1
3,158 + MPMX19_05334 0.20 -0.9
3,159 - MPMX19_05334 0.20 -0.5
3,159 - MPMX19_05334 0.20 -1.7
3,159 - MPMX19_05334 0.20 -0.7
3,159 - MPMX19_05334 0.20 -0.3
3,159 - MPMX19_05334 0.20 +0.2
3,159 - MPMX19_05334 0.20 -0.6
3,159 - MPMX19_05334 0.20 -0.4
3,159 - MPMX19_05334 0.20 +1.3
3,159 - MPMX19_05334 0.20 -1.2
3,159 - MPMX19_05334 0.20 -1.6
3,159 - MPMX19_05334 0.20 -1.0
3,159 - MPMX19_05334 0.20 -1.2
3,233 + MPMX19_05334 0.24 +1.3
3,233 + MPMX19_05334 0.24 -1.7
3,233 + MPMX19_05334 0.24 -0.2
3,233 + MPMX19_05334 0.24 -0.3
3,233 + MPMX19_05334 0.24 -0.5
3,233 + MPMX19_05334 0.24 -1.5
3,233 + MPMX19_05334 0.24 -0.9
3,233 + MPMX19_05334 0.24 -2.0
3,233 + MPMX19_05334 0.24 +0.3
3,234 - MPMX19_05334 0.24 -0.5
3,234 - MPMX19_05334 0.24 -1.3
3,234 - MPMX19_05334 0.24 -0.8
3,234 - MPMX19_05334 0.24 -0.7
3,234 - MPMX19_05334 0.24 +0.7
3,234 - MPMX19_05334 0.24 -2.1
3,234 - MPMX19_05334 0.24 -0.2
3,234 - MPMX19_05334 0.24 +0.2
3,284 + MPMX19_05334 0.27 +0.0
3,284 + MPMX19_05334 0.27 -1.1
3,284 + MPMX19_05334 0.27 -1.1
3,284 + MPMX19_05334 0.27 -0.6
3,284 + MPMX19_05334 0.27 -0.7
3,285 - MPMX19_05334 0.27 -1.1
3,285 - MPMX19_05334 0.27 -1.2
3,512 + MPMX19_05334 0.41 +0.3
3,512 + MPMX19_05334 0.41 -1.2
3,512 + MPMX19_05334 0.41 -0.5
3,512 + MPMX19_05334 0.41 -0.5
3,512 + MPMX19_05334 0.41 -1.2
3,512 + MPMX19_05334 0.41 -0.9
3,512 + MPMX19_05334 0.41 -1.4
3,512 + MPMX19_05334 0.41 -0.9
3,513 - MPMX19_05334 0.41 +0.7
3,513 - MPMX19_05334 0.41 -1.4
3,513 - MPMX19_05334 0.41 -0.8
3,513 - MPMX19_05334 0.41 -0.9
3,513 - MPMX19_05334 0.41 -1.3
3,513 - MPMX19_05334 0.41 +2.1
3,513 - MPMX19_05334 0.41 +0.1
3,513 - MPMX19_05334 0.41 +0.9
3,650 + MPMX19_05334 0.50 -2.0
3,650 + MPMX19_05334 0.50 -1.5
3,650 + MPMX19_05334 0.50 -0.2
3,650 + MPMX19_05334 0.50 -0.4
3,650 + MPMX19_05334 0.50 -0.3
3,650 + MPMX19_05334 0.50 -1.1
3,650 + MPMX19_05334 0.50 -0.7
3,651 - MPMX19_05334 0.50 +0.8
3,651 - MPMX19_05334 0.50 -0.7
3,651 - MPMX19_05334 0.50 -0.1
3,651 - MPMX19_05334 0.50 +0.3
3,956 + MPMX19_05334 0.69 -1.2
4,064 + MPMX19_05334 0.75 -0.7
4,064 + MPMX19_05334 0.75 -2.1
4,064 + MPMX19_05334 0.75 -1.7
4,064 + MPMX19_05334 0.75 -1.1
4,064 + MPMX19_05334 0.75 +0.5
4,065 - MPMX19_05334 0.75 -1.7
4,065 - MPMX19_05334 0.75 -1.3
4,334 + -0.6
4,334 + -1.2
4,334 + -0.5
4,334 + +0.3
4,335 - +0.3
4,335 - -2.2
4,531 + +1.1
4,531 + +0.5
4,532 - +0.1
4,532 - -0.7
4,532 - +0.4
4,627 + MPMX19_05335 0.13 -2.3
4,627 + MPMX19_05335 0.13 -0.7
4,627 + MPMX19_05335 0.13 -2.8
4,627 + MPMX19_05335 0.13 -0.9
4,627 + MPMX19_05335 0.13 -0.6
4,628 - MPMX19_05335 0.13 -0.3
4,628 - MPMX19_05335 0.13 -0.5
4,628 - MPMX19_05335 0.13 -1.3
4,628 - MPMX19_05335 0.13 -0.7
4,628 - MPMX19_05335 0.13 +0.1
4,628 - MPMX19_05335 0.13 -0.6
4,628 - MPMX19_05335 0.13 +0.2
4,628 - MPMX19_05335 0.13 -1.6
5,054 - MPMX19_05335 0.46 +0.9
5,128 + MPMX19_05335 0.52 -0.5
5,128 + MPMX19_05335 0.52 -1.5
5,128 + MPMX19_05335 0.52 -1.9
5,128 + MPMX19_05335 0.52 +0.3
5,128 + MPMX19_05335 0.52 +0.9
5,128 + MPMX19_05335 0.52 -0.4
5,128 + MPMX19_05335 0.52 -1.3
5,128 + MPMX19_05335 0.52 +0.7
5,128 + MPMX19_05335 0.52 -0.9
5,128 + MPMX19_05335 0.52 -0.1
5,128 + MPMX19_05335 0.52 -0.5
5,128 + MPMX19_05335 0.52 -1.1
5,128 + MPMX19_05335 0.52 -0.7
5,128 + MPMX19_05335 0.52 -0.1
5,128 + MPMX19_05335 0.52 -1.2
5,128 + MPMX19_05335 0.52 -0.8
5,128 + MPMX19_05335 0.52 +0.8
5,128 + MPMX19_05335 0.52 +0.2
5,128 + MPMX19_05335 0.52 -0.3
5,129 - MPMX19_05335 0.52 +0.2
5,129 - MPMX19_05335 0.52 -0.6
5,129 - MPMX19_05335 0.52 -0.9
5,129 - MPMX19_05335 0.52 -0.2
5,129 - MPMX19_05335 0.52 -0.3
5,129 - MPMX19_05335 0.52 -0.7
5,129 - MPMX19_05335 0.52 -1.3
5,129 - MPMX19_05335 0.52 -0.7
5,129 - MPMX19_05335 0.52 -1.3
5,129 - MPMX19_05335 0.52 -1.6
5,129 - MPMX19_05335 0.52 +0.2
5,129 - MPMX19_05335 0.52 -1.5
5,129 - MPMX19_05335 0.52 +1.4
5,129 - MPMX19_05335 0.52 -1.9
5,129 - MPMX19_05335 0.52 -0.1
5,129 - MPMX19_05335 0.52 +0.4
5,129 - MPMX19_05335 0.52 -0.7
5,350 + MPMX19_05335 0.70 -0.3
5,350 + MPMX19_05335 0.70 -0.5
5,350 + MPMX19_05335 0.70 -2.2
5,351 - MPMX19_05335 0.70 -1.2
5,351 - MPMX19_05335 0.70 -1.4
5,351 - MPMX19_05335 0.70 -1.1
5,351 - MPMX19_05335 0.70 -0.4
5,389 + MPMX19_05335 0.73 +0.5
5,389 + MPMX19_05335 0.73 -0.7
5,389 + MPMX19_05335 0.73 -0.3
5,389 + MPMX19_05335 0.73 +1.4
5,389 + MPMX19_05335 0.73 -1.1
5,389 + MPMX19_05335 0.73 -1.2
5,389 + MPMX19_05335 0.73 -0.1
5,389 + MPMX19_05335 0.73 +0.4
5,389 + MPMX19_05335 0.73 +0.3
5,389 + MPMX19_05335 0.73 -0.1
5,389 + MPMX19_05335 0.73 -0.5
5,389 + MPMX19_05335 0.73 +0.6
5,390 - MPMX19_05335 0.73 +0.3
5,390 - MPMX19_05335 0.73 -1.4
5,390 - MPMX19_05335 0.73 -1.3
5,390 - MPMX19_05335 0.73 -1.1
5,390 - MPMX19_05335 0.73 -0.1
5,390 - MPMX19_05335 0.73 -1.1
5,390 - MPMX19_05335 0.73 -0.7
5,390 - MPMX19_05335 0.73 -0.9
5,390 - MPMX19_05335 0.73 -0.9
5,390 - MPMX19_05335 0.73 +0.7
5,390 - MPMX19_05335 0.73 -0.4
5,390 - MPMX19_05335 0.73 +0.1
5,390 - MPMX19_05335 0.73 -0.7
5,390 - MPMX19_05335 0.73 -1.3
5,390 - MPMX19_05335 0.73 -1.2
5,390 - MPMX19_05335 0.73 -0.4

Or see this region's nucleotide sequence