Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05333

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05332 and MPMX19_05333 are separated by 119 nucleotidesMPMX19_05333 and MPMX19_05334 are separated by 161 nucleotides MPMX19_05332: MPMX19_05332 - HTH-type transcriptional regulator GntR, at 85 to 1,065 _05332 MPMX19_05333: MPMX19_05333 - Thymidine phosphorylase, at 1,185 to 2,675 _05333 MPMX19_05334: MPMX19_05334 - hypothetical protein, at 2,837 to 4,468 _05334 Position (kb) 1 2 3Strain fitness (log2 ratio) -2 -1 0 1 2at 0.208 kb on + strand, within MPMX19_05332at 0.208 kb on + strand, within MPMX19_05332at 0.208 kb on + strand, within MPMX19_05332at 0.208 kb on + strand, within MPMX19_05332at 0.208 kb on + strand, within MPMX19_05332at 0.208 kb on + strand, within MPMX19_05332at 0.208 kb on + strand, within MPMX19_05332at 0.209 kb on - strand, within MPMX19_05332at 0.209 kb on - strand, within MPMX19_05332at 0.209 kb on - strand, within MPMX19_05332at 0.209 kb on - strand, within MPMX19_05332at 0.209 kb on - strand, within MPMX19_05332at 0.371 kb on - strand, within MPMX19_05332at 0.371 kb on - strand, within MPMX19_05332at 0.406 kb on + strand, within MPMX19_05332at 0.406 kb on + strand, within MPMX19_05332at 0.406 kb on + strand, within MPMX19_05332at 0.406 kb on + strand, within MPMX19_05332at 0.406 kb on + strand, within MPMX19_05332at 0.406 kb on + strand, within MPMX19_05332at 0.406 kb on + strand, within MPMX19_05332at 0.406 kb on + strand, within MPMX19_05332at 0.407 kb on - strand, within MPMX19_05332at 0.407 kb on - strand, within MPMX19_05332at 0.407 kb on - strand, within MPMX19_05332at 0.407 kb on - strand, within MPMX19_05332at 0.472 kb on + strand, within MPMX19_05332at 0.472 kb on + strand, within MPMX19_05332at 0.472 kb on + strand, within MPMX19_05332at 0.472 kb on + strand, within MPMX19_05332at 0.473 kb on - strand, within MPMX19_05332at 0.473 kb on - strand, within MPMX19_05332at 0.473 kb on - strand, within MPMX19_05332at 0.473 kb on - strand, within MPMX19_05332at 0.473 kb on - strand, within MPMX19_05332at 0.665 kb on - strand, within MPMX19_05332at 0.694 kb on + strand, within MPMX19_05332at 0.694 kb on + strand, within MPMX19_05332at 0.694 kb on + strand, within MPMX19_05332at 0.695 kb on - strand, within MPMX19_05332at 0.695 kb on - strand, within MPMX19_05332at 0.695 kb on - strand, within MPMX19_05332at 0.953 kb on - strand, within MPMX19_05332at 1.073 kb on + strandat 1.073 kb on + strandat 1.073 kb on + strandat 1.074 kb on - strandat 1.074 kb on - strandat 1.074 kb on - strandat 1.074 kb on - strandat 1.074 kb on - strandat 1.074 kb on - strandat 1.074 kb on - strandat 1.074 kb on - strandat 1.116 kb on + strandat 1.117 kb on - strandat 1.117 kb on - strandat 1.173 kb on + strandat 1.173 kb on + strandat 1.173 kb on + strandat 1.174 kb on - strandat 1.174 kb on - strandat 1.174 kb on - strandat 1.174 kb on - strandat 1.174 kb on - strandat 1.210 kb on + strandat 1.210 kb on + strandat 1.260 kb on + strandat 1.260 kb on + strandat 1.261 kb on - strandat 1.548 kb on + strand, within MPMX19_05333at 1.548 kb on + strand, within MPMX19_05333at 1.549 kb on - strand, within MPMX19_05333at 1.673 kb on + strand, within MPMX19_05333at 2.481 kb on + strand, within MPMX19_05333at 2.496 kb on - strand, within MPMX19_05333at 2.803 kb on + strandat 2.987 kb on + strandat 2.987 kb on + strandat 2.987 kb on + strandat 2.987 kb on + strandat 2.987 kb on + strandat 2.988 kb on - strandat 2.988 kb on - strandat 2.988 kb on - strandat 2.988 kb on - strandat 2.988 kb on - strandat 3.104 kb on + strand, within MPMX19_05334at 3.104 kb on + strand, within MPMX19_05334at 3.104 kb on + strand, within MPMX19_05334at 3.105 kb on - strand, within MPMX19_05334at 3.105 kb on - strand, within MPMX19_05334at 3.105 kb on - strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.137 kb on + strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.138 kb on - strand, within MPMX19_05334at 3.158 kb on + strand, within MPMX19_05334at 3.158 kb on + strand, within MPMX19_05334at 3.158 kb on + strand, within MPMX19_05334at 3.158 kb on + strand, within MPMX19_05334at 3.158 kb on + strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.159 kb on - strand, within MPMX19_05334at 3.233 kb on + strand, within MPMX19_05334at 3.233 kb on + strand, within MPMX19_05334at 3.233 kb on + strand, within MPMX19_05334at 3.233 kb on + strand, within MPMX19_05334at 3.233 kb on + strand, within MPMX19_05334at 3.233 kb on + strand, within MPMX19_05334at 3.233 kb on + strand, within MPMX19_05334at 3.233 kb on + strand, within MPMX19_05334at 3.233 kb on + strand, within MPMX19_05334at 3.234 kb on - strand, within MPMX19_05334at 3.234 kb on - strand, within MPMX19_05334at 3.234 kb on - strand, within MPMX19_05334at 3.234 kb on - strand, within MPMX19_05334at 3.234 kb on - strand, within MPMX19_05334at 3.234 kb on - strand, within MPMX19_05334at 3.234 kb on - strand, within MPMX19_05334at 3.234 kb on - strand, within MPMX19_05334at 3.284 kb on + strand, within MPMX19_05334at 3.284 kb on + strand, within MPMX19_05334at 3.284 kb on + strand, within MPMX19_05334at 3.284 kb on + strand, within MPMX19_05334at 3.284 kb on + strand, within MPMX19_05334at 3.285 kb on - strand, within MPMX19_05334at 3.285 kb on - strand, within MPMX19_05334at 3.512 kb on + strand, within MPMX19_05334at 3.512 kb on + strand, within MPMX19_05334at 3.512 kb on + strand, within MPMX19_05334at 3.512 kb on + strand, within MPMX19_05334at 3.512 kb on + strand, within MPMX19_05334at 3.512 kb on + strand, within MPMX19_05334at 3.512 kb on + strand, within MPMX19_05334at 3.512 kb on + strand, within MPMX19_05334at 3.513 kb on - strand, within MPMX19_05334at 3.513 kb on - strand, within MPMX19_05334at 3.513 kb on - strand, within MPMX19_05334at 3.513 kb on - strand, within MPMX19_05334at 3.513 kb on - strand, within MPMX19_05334at 3.513 kb on - strand, within MPMX19_05334at 3.513 kb on - strand, within MPMX19_05334at 3.513 kb on - strand, within MPMX19_05334at 3.650 kb on + strand, within MPMX19_05334at 3.650 kb on + strand, within MPMX19_05334at 3.650 kb on + strand, within MPMX19_05334at 3.650 kb on + strand, within MPMX19_05334at 3.650 kb on + strand, within MPMX19_05334at 3.650 kb on + strand, within MPMX19_05334at 3.650 kb on + strand, within MPMX19_05334at 3.651 kb on - strand, within MPMX19_05334at 3.651 kb on - strand, within MPMX19_05334at 3.651 kb on - strand, within MPMX19_05334at 3.651 kb on - strand, within MPMX19_05334

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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208 + MPMX19_05332 0.13 +0.4
208 + MPMX19_05332 0.13 -0.7
208 + MPMX19_05332 0.13 -0.2
208 + MPMX19_05332 0.13 -0.5
208 + MPMX19_05332 0.13 +0.3
208 + MPMX19_05332 0.13 +0.5
208 + MPMX19_05332 0.13 -0.2
209 - MPMX19_05332 0.13 -0.5
209 - MPMX19_05332 0.13 -1.6
209 - MPMX19_05332 0.13 -2.1
209 - MPMX19_05332 0.13 +0.3
209 - MPMX19_05332 0.13 +1.1
371 - MPMX19_05332 0.29 -0.2
371 - MPMX19_05332 0.29 +0.5
406 + MPMX19_05332 0.33 +0.2
406 + MPMX19_05332 0.33 +1.5
406 + MPMX19_05332 0.33 +1.5
406 + MPMX19_05332 0.33 -2.1
406 + MPMX19_05332 0.33 -0.2
406 + MPMX19_05332 0.33 -0.7
406 + MPMX19_05332 0.33 +0.5
406 + MPMX19_05332 0.33 -0.1
407 - MPMX19_05332 0.33 -1.4
407 - MPMX19_05332 0.33 -0.2
407 - MPMX19_05332 0.33 +0.1
407 - MPMX19_05332 0.33 -1.7
472 + MPMX19_05332 0.39 -0.1
472 + MPMX19_05332 0.39 -1.3
472 + MPMX19_05332 0.39 +0.3
472 + MPMX19_05332 0.39 +0.6
473 - MPMX19_05332 0.40 +0.1
473 - MPMX19_05332 0.40 -1.1
473 - MPMX19_05332 0.40 -0.5
473 - MPMX19_05332 0.40 -1.4
473 - MPMX19_05332 0.40 +0.0
665 - MPMX19_05332 0.59 -0.7
694 + MPMX19_05332 0.62 +1.5
694 + MPMX19_05332 0.62 +1.7
694 + MPMX19_05332 0.62 -0.2
695 - MPMX19_05332 0.62 -0.1
695 - MPMX19_05332 0.62 +1.1
695 - MPMX19_05332 0.62 -0.4
953 - MPMX19_05332 0.88 +0.5
1,073 + -0.7
1,073 + +1.6
1,073 + -1.5
1,074 - +0.4
1,074 - -0.4
1,074 - -0.2
1,074 - -0.7
1,074 - +0.1
1,074 - +0.5
1,074 - -1.9
1,074 - -1.5
1,116 + -0.1
1,117 - -0.9
1,117 - -0.7
1,173 + -0.7
1,173 + +0.7
1,173 + -1.2
1,174 - -0.5
1,174 - +0.6
1,174 - -1.8
1,174 - +0.9
1,174 - -0.5
1,210 + -1.3
1,210 + -0.8
1,260 + -0.3
1,260 + -1.7
1,261 - -1.7
1,548 + MPMX19_05333 0.24 +0.1
1,548 + MPMX19_05333 0.24 -1.9
1,549 - MPMX19_05333 0.24 -0.5
1,673 + MPMX19_05333 0.33 -1.2
2,481 + MPMX19_05333 0.87 -0.9
2,496 - MPMX19_05333 0.88 -0.7
2,803 + -0.7
2,987 + +0.5
2,987 + +0.1
2,987 + +0.0
2,987 + -0.6
2,987 + -0.8
2,988 - -1.1
2,988 - +0.8
2,988 - -0.5
2,988 - -0.1
2,988 - +0.3
3,104 + MPMX19_05334 0.16 -1.5
3,104 + MPMX19_05334 0.16 +1.7
3,104 + MPMX19_05334 0.16 -1.0
3,105 - MPMX19_05334 0.16 -1.0
3,105 - MPMX19_05334 0.16 +0.5
3,105 - MPMX19_05334 0.16 -0.6
3,137 + MPMX19_05334 0.18 -0.1
3,137 + MPMX19_05334 0.18 -0.7
3,137 + MPMX19_05334 0.18 -1.3
3,137 + MPMX19_05334 0.18 -0.9
3,137 + MPMX19_05334 0.18 +1.0
3,137 + MPMX19_05334 0.18 -0.5
3,137 + MPMX19_05334 0.18 +0.2
3,137 + MPMX19_05334 0.18 -0.5
3,137 + MPMX19_05334 0.18 -0.5
3,137 + MPMX19_05334 0.18 +1.0
3,137 + MPMX19_05334 0.18 -0.2
3,137 + MPMX19_05334 0.18 +0.3
3,137 + MPMX19_05334 0.18 +1.4
3,137 + MPMX19_05334 0.18 -0.1
3,137 + MPMX19_05334 0.18 -1.8
3,138 - MPMX19_05334 0.18 -1.6
3,138 - MPMX19_05334 0.18 +0.1
3,138 - MPMX19_05334 0.18 -1.3
3,138 - MPMX19_05334 0.18 -0.9
3,138 - MPMX19_05334 0.18 -1.2
3,138 - MPMX19_05334 0.18 +1.1
3,138 - MPMX19_05334 0.18 -0.8
3,138 - MPMX19_05334 0.18 +0.1
3,138 - MPMX19_05334 0.18 -1.1
3,138 - MPMX19_05334 0.18 -1.3
3,138 - MPMX19_05334 0.18 +0.4
3,138 - MPMX19_05334 0.18 -1.3
3,138 - MPMX19_05334 0.18 -0.9
3,138 - MPMX19_05334 0.18 +1.2
3,138 - MPMX19_05334 0.18 +0.0
3,138 - MPMX19_05334 0.18 -0.2
3,138 - MPMX19_05334 0.18 -2.3
3,138 - MPMX19_05334 0.18 -1.8
3,158 + MPMX19_05334 0.20 -1.4
3,158 + MPMX19_05334 0.20 +0.1
3,158 + MPMX19_05334 0.20 -0.3
3,158 + MPMX19_05334 0.20 +0.1
3,158 + MPMX19_05334 0.20 -0.9
3,159 - MPMX19_05334 0.20 -0.5
3,159 - MPMX19_05334 0.20 -1.7
3,159 - MPMX19_05334 0.20 -0.7
3,159 - MPMX19_05334 0.20 -0.3
3,159 - MPMX19_05334 0.20 +0.2
3,159 - MPMX19_05334 0.20 -0.6
3,159 - MPMX19_05334 0.20 -0.4
3,159 - MPMX19_05334 0.20 +1.3
3,159 - MPMX19_05334 0.20 -1.2
3,159 - MPMX19_05334 0.20 -1.6
3,159 - MPMX19_05334 0.20 -1.0
3,159 - MPMX19_05334 0.20 -1.2
3,233 + MPMX19_05334 0.24 +1.3
3,233 + MPMX19_05334 0.24 -1.7
3,233 + MPMX19_05334 0.24 -0.2
3,233 + MPMX19_05334 0.24 -0.3
3,233 + MPMX19_05334 0.24 -0.5
3,233 + MPMX19_05334 0.24 -1.5
3,233 + MPMX19_05334 0.24 -0.9
3,233 + MPMX19_05334 0.24 -2.0
3,233 + MPMX19_05334 0.24 +0.3
3,234 - MPMX19_05334 0.24 -0.5
3,234 - MPMX19_05334 0.24 -1.3
3,234 - MPMX19_05334 0.24 -0.8
3,234 - MPMX19_05334 0.24 -0.7
3,234 - MPMX19_05334 0.24 +0.7
3,234 - MPMX19_05334 0.24 -2.1
3,234 - MPMX19_05334 0.24 -0.2
3,234 - MPMX19_05334 0.24 +0.2
3,284 + MPMX19_05334 0.27 +0.0
3,284 + MPMX19_05334 0.27 -1.1
3,284 + MPMX19_05334 0.27 -1.1
3,284 + MPMX19_05334 0.27 -0.6
3,284 + MPMX19_05334 0.27 -0.7
3,285 - MPMX19_05334 0.27 -1.1
3,285 - MPMX19_05334 0.27 -1.2
3,512 + MPMX19_05334 0.41 +0.3
3,512 + MPMX19_05334 0.41 -1.2
3,512 + MPMX19_05334 0.41 -0.5
3,512 + MPMX19_05334 0.41 -0.5
3,512 + MPMX19_05334 0.41 -1.2
3,512 + MPMX19_05334 0.41 -0.9
3,512 + MPMX19_05334 0.41 -1.4
3,512 + MPMX19_05334 0.41 -0.9
3,513 - MPMX19_05334 0.41 +0.7
3,513 - MPMX19_05334 0.41 -1.4
3,513 - MPMX19_05334 0.41 -0.8
3,513 - MPMX19_05334 0.41 -0.9
3,513 - MPMX19_05334 0.41 -1.3
3,513 - MPMX19_05334 0.41 +2.1
3,513 - MPMX19_05334 0.41 +0.1
3,513 - MPMX19_05334 0.41 +0.9
3,650 + MPMX19_05334 0.50 -2.0
3,650 + MPMX19_05334 0.50 -1.5
3,650 + MPMX19_05334 0.50 -0.2
3,650 + MPMX19_05334 0.50 -0.4
3,650 + MPMX19_05334 0.50 -0.3
3,650 + MPMX19_05334 0.50 -1.1
3,650 + MPMX19_05334 0.50 -0.7
3,651 - MPMX19_05334 0.50 +0.8
3,651 - MPMX19_05334 0.50 -0.7
3,651 - MPMX19_05334 0.50 -0.1
3,651 - MPMX19_05334 0.50 +0.3

Or see this region's nucleotide sequence