Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05328

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05327 and MPMX19_05328 are separated by 15 nucleotidesMPMX19_05328 and MPMX19_05329 are separated by 157 nucleotides MPMX19_05327: MPMX19_05327 - HTH-type transcriptional regulator PgrR, at 868,402 to 869,301 _05327 MPMX19_05328: MPMX19_05328 - hypothetical protein, at 869,317 to 869,634 _05328 MPMX19_05329: MPMX19_05329 - PTS system fructose-specific EIIB'BC component, at 869,792 to 871,564 _05329 Position (kb) 869 870Strain fitness (log2 ratio) -2 -1 0 1 2 3at 868.351 kb on + strandat 868.364 kb on + strandat 868.549 kb on + strand, within MPMX19_05327at 868.550 kb on - strand, within MPMX19_05327at 868.550 kb on - strand, within MPMX19_05327at 868.550 kb on - strand, within MPMX19_05327at 868.717 kb on + strand, within MPMX19_05327at 868.718 kb on - strand, within MPMX19_05327at 868.718 kb on - strand, within MPMX19_05327at 868.829 kb on - strand, within MPMX19_05327at 868.924 kb on + strand, within MPMX19_05327at 868.924 kb on + strand, within MPMX19_05327at 868.925 kb on - strand, within MPMX19_05327at 868.925 kb on - strand, within MPMX19_05327at 868.925 kb on - strand, within MPMX19_05327at 868.925 kb on - strand, within MPMX19_05327at 869.125 kb on + strand, within MPMX19_05327at 869.125 kb on + strand, within MPMX19_05327at 869.125 kb on + strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.213 kb on - strandat 869.213 kb on - strandat 869.293 kb on + strandat 869.293 kb on + strandat 869.293 kb on + strandat 869.294 kb on - strandat 869.294 kb on - strandat 869.294 kb on - strandat 869.336 kb on + strandat 869.336 kb on + strandat 869.336 kb on + strandat 869.337 kb on - strandat 869.337 kb on - strandat 869.388 kb on + strand, within MPMX19_05328at 869.388 kb on + strand, within MPMX19_05328at 869.388 kb on + strand, within MPMX19_05328at 869.389 kb on - strand, within MPMX19_05328at 869.389 kb on - strand, within MPMX19_05328at 869.389 kb on - strand, within MPMX19_05328at 869.389 kb on - strand, within MPMX19_05328at 869.710 kb on - strandat 869.710 kb on - strandat 869.710 kb on - strandat 869.710 kb on - strandat 869.713 kb on + strandat 869.713 kb on + strandat 869.713 kb on + strandat 869.713 kb on + strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.916 kb on + strandat 869.916 kb on + strandat 869.917 kb on - strandat 869.917 kb on - strandat 869.917 kb on - strandat 870.234 kb on + strand, within MPMX19_05329at 870.235 kb on - strand, within MPMX19_05329at 870.235 kb on - strand, within MPMX19_05329at 870.235 kb on - strand, within MPMX19_05329at 870.235 kb on - strand, within MPMX19_05329at 870.235 kb on - strand, within MPMX19_05329at 870.235 kb on - strand, within MPMX19_05329at 870.235 kb on - strand, within MPMX19_05329at 870.270 kb on + strand, within MPMX19_05329at 870.270 kb on + strand, within MPMX19_05329at 870.270 kb on + strand, within MPMX19_05329at 870.270 kb on + strand, within MPMX19_05329at 870.270 kb on + strand, within MPMX19_05329at 870.271 kb on - strand, within MPMX19_05329at 870.271 kb on - strand, within MPMX19_05329at 870.271 kb on - strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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868,351 + -0.3
868,364 + -0.4
868,549 + MPMX19_05327 0.16 +0.8
868,550 - MPMX19_05327 0.16 +2.0
868,550 - MPMX19_05327 0.16 -1.8
868,550 - MPMX19_05327 0.16 -1.0
868,717 + MPMX19_05327 0.35 -1.2
868,718 - MPMX19_05327 0.35 -0.9
868,718 - MPMX19_05327 0.35 -0.6
868,829 - MPMX19_05327 0.47 -1.6
868,924 + MPMX19_05327 0.58 +0.2
868,924 + MPMX19_05327 0.58 -0.4
868,925 - MPMX19_05327 0.58 +0.2
868,925 - MPMX19_05327 0.58 +1.0
868,925 - MPMX19_05327 0.58 -1.0
868,925 - MPMX19_05327 0.58 -2.3
869,125 + MPMX19_05327 0.80 +0.4
869,125 + MPMX19_05327 0.80 -1.2
869,125 + MPMX19_05327 0.80 +0.4
869,126 - MPMX19_05327 0.80 -0.4
869,126 - MPMX19_05327 0.80 -0.6
869,126 - MPMX19_05327 0.80 +0.2
869,126 - MPMX19_05327 0.80 -1.9
869,126 - MPMX19_05327 0.80 +0.4
869,126 - MPMX19_05327 0.80 +0.6
869,128 + MPMX19_05327 0.81 +0.8
869,128 + MPMX19_05327 0.81 -1.2
869,128 + MPMX19_05327 0.81 +0.0
869,128 + MPMX19_05327 0.81 -0.5
869,128 + MPMX19_05327 0.81 -0.4
869,128 + MPMX19_05327 0.81 +0.0
869,129 - MPMX19_05327 0.81 -0.5
869,129 - MPMX19_05327 0.81 +0.5
869,129 - MPMX19_05327 0.81 -1.3
869,129 - MPMX19_05327 0.81 -0.3
869,129 - MPMX19_05327 0.81 -0.8
869,129 - MPMX19_05327 0.81 -2.0
869,129 - MPMX19_05327 0.81 -1.2
869,213 - -1.3
869,213 - -0.0
869,293 + -1.4
869,293 + +0.0
869,293 + +0.2
869,294 - -1.6
869,294 - -1.3
869,294 - +1.3
869,336 + -0.1
869,336 + -0.2
869,336 + +0.0
869,337 - +0.7
869,337 - -1.6
869,388 + MPMX19_05328 0.22 +0.1
869,388 + MPMX19_05328 0.22 -0.4
869,388 + MPMX19_05328 0.22 -0.9
869,389 - MPMX19_05328 0.23 +0.4
869,389 - MPMX19_05328 0.23 +0.3
869,389 - MPMX19_05328 0.23 -0.8
869,389 - MPMX19_05328 0.23 +0.0
869,710 - +1.4
869,710 - +3.6
869,710 - +0.4
869,710 - +0.6
869,713 + -1.4
869,713 + -0.3
869,713 + -2.1
869,713 + +0.4
869,714 - -0.4
869,714 - -0.3
869,714 - -1.0
869,714 - -0.6
869,714 - +1.4
869,714 - +0.9
869,714 - -0.1
869,714 - -0.1
869,714 - -0.6
869,714 - -0.3
869,916 + -0.4
869,916 + +2.0
869,917 - -2.1
869,917 - -0.6
869,917 - +0.4
870,234 + MPMX19_05329 0.25 -1.0
870,235 - MPMX19_05329 0.25 -1.0
870,235 - MPMX19_05329 0.25 +0.1
870,235 - MPMX19_05329 0.25 -0.4
870,235 - MPMX19_05329 0.25 -0.3
870,235 - MPMX19_05329 0.25 -0.1
870,235 - MPMX19_05329 0.25 -1.2
870,235 - MPMX19_05329 0.25 -0.2
870,270 + MPMX19_05329 0.27 +0.9
870,270 + MPMX19_05329 0.27 +1.0
870,270 + MPMX19_05329 0.27 -0.8
870,270 + MPMX19_05329 0.27 +0.2
870,270 + MPMX19_05329 0.27 -1.7
870,271 - MPMX19_05329 0.27 -0.3
870,271 - MPMX19_05329 0.27 -1.2
870,271 - MPMX19_05329 0.27 -0.1
870,417 + MPMX19_05329 0.35 +0.6
870,417 + MPMX19_05329 0.35 -0.4
870,417 + MPMX19_05329 0.35 -1.2
870,417 + MPMX19_05329 0.35 +0.6
870,417 + MPMX19_05329 0.35 +0.1
870,417 + MPMX19_05329 0.35 -1.6
870,417 + MPMX19_05329 0.35 -1.1
870,417 + MPMX19_05329 0.35 -2.2
870,417 + MPMX19_05329 0.35 +0.6
870,417 + MPMX19_05329 0.35 +0.3
870,417 + MPMX19_05329 0.35 -0.0
870,417 + MPMX19_05329 0.35 -0.6
870,417 + MPMX19_05329 0.35 +1.3
870,417 + MPMX19_05329 0.35 -0.0
870,418 - MPMX19_05329 0.35 +0.5
870,418 - MPMX19_05329 0.35 -0.5
870,418 - MPMX19_05329 0.35 +0.2
870,418 - MPMX19_05329 0.35 -1.1
870,418 - MPMX19_05329 0.35 -1.6
870,418 - MPMX19_05329 0.35 +0.1
870,418 - MPMX19_05329 0.35 +1.2
870,418 - MPMX19_05329 0.35 -0.9
870,418 - MPMX19_05329 0.35 -1.3
870,418 - MPMX19_05329 0.35 -1.2
870,418 - MPMX19_05329 0.35 +0.2
870,418 - MPMX19_05329 0.35 -1.4
870,418 - MPMX19_05329 0.35 +0.6
870,418 - MPMX19_05329 0.35 -0.6
870,418 - MPMX19_05329 0.35 -1.8
870,418 - MPMX19_05329 0.35 -1.3
870,418 - MPMX19_05329 0.35 -2.0
870,418 - MPMX19_05329 0.35 -0.2
870,418 - MPMX19_05329 0.35 +0.0

Or see this region's nucleotide sequence