Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05322

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05321 and MPMX19_05322 overlap by 8 nucleotidesMPMX19_05322 and MPMX19_05323 are separated by 49 nucleotides MPMX19_05321: MPMX19_05321 - Multicopper oxidase mco, at 861,045 to 862,529 _05321 MPMX19_05322: MPMX19_05322 - hypothetical protein, at 862,522 to 863,796 _05322 MPMX19_05323: MPMX19_05323 - hypothetical protein, at 863,846 to 864,961 _05323 Position (kb) 862 863 864Strain fitness (log2 ratio) -2 -1 0 1 2at 861.777 kb on + strand, within MPMX19_05321at 861.778 kb on - strand, within MPMX19_05321at 861.778 kb on - strand, within MPMX19_05321at 861.778 kb on - strand, within MPMX19_05321at 861.778 kb on - strand, within MPMX19_05321at 861.778 kb on - strand, within MPMX19_05321at 861.966 kb on + strand, within MPMX19_05321at 861.966 kb on + strand, within MPMX19_05321at 861.966 kb on + strand, within MPMX19_05321at 861.967 kb on - strand, within MPMX19_05321at 861.967 kb on - strand, within MPMX19_05321at 861.967 kb on - strand, within MPMX19_05321at 862.164 kb on + strand, within MPMX19_05321at 862.164 kb on + strand, within MPMX19_05321at 862.164 kb on + strand, within MPMX19_05321at 862.165 kb on - strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.285 kb on - strand, within MPMX19_05321at 862.285 kb on - strand, within MPMX19_05321at 862.285 kb on - strand, within MPMX19_05321at 862.285 kb on - strand, within MPMX19_05321at 862.285 kb on - strand, within MPMX19_05321at 862.285 kb on - strand, within MPMX19_05321at 862.285 kb on - strand, within MPMX19_05321at 862.285 kb on - strand, within MPMX19_05321at 862.285 kb on - strand, within MPMX19_05321at 862.285 kb on - strand, within MPMX19_05321at 862.341 kb on + strand, within MPMX19_05321at 862.341 kb on + strand, within MPMX19_05321at 862.341 kb on + strand, within MPMX19_05321at 862.342 kb on - strand, within MPMX19_05321at 862.342 kb on - strand, within MPMX19_05321at 862.342 kb on - strand, within MPMX19_05321at 862.512 kb on + strandat 862.513 kb on - strandat 862.513 kb on - strandat 862.513 kb on - strandat 862.513 kb on - strandat 862.513 kb on - strandat 862.513 kb on - strandat 862.513 kb on - strandat 862.513 kb on - strandat 862.513 kb on - strandat 862.534 kb on - strandat 862.693 kb on + strand, within MPMX19_05322at 862.693 kb on + strand, within MPMX19_05322at 862.693 kb on + strand, within MPMX19_05322at 862.693 kb on + strand, within MPMX19_05322at 862.694 kb on - strand, within MPMX19_05322at 862.694 kb on - strand, within MPMX19_05322at 862.694 kb on - strand, within MPMX19_05322at 862.783 kb on + strand, within MPMX19_05322at 862.783 kb on + strand, within MPMX19_05322at 862.783 kb on + strand, within MPMX19_05322at 862.784 kb on - strand, within MPMX19_05322at 862.813 kb on + strand, within MPMX19_05322at 862.813 kb on + strand, within MPMX19_05322at 862.813 kb on + strand, within MPMX19_05322at 862.813 kb on + strand, within MPMX19_05322at 862.813 kb on + strand, within MPMX19_05322at 862.879 kb on + strand, within MPMX19_05322at 862.961 kb on - strand, within MPMX19_05322at 863.113 kb on + strand, within MPMX19_05322at 863.113 kb on + strand, within MPMX19_05322at 863.113 kb on + strand, within MPMX19_05322at 863.113 kb on + strand, within MPMX19_05322at 863.113 kb on + strand, within MPMX19_05322at 863.114 kb on - strand, within MPMX19_05322at 863.114 kb on - strand, within MPMX19_05322at 863.114 kb on - strand, within MPMX19_05322at 863.256 kb on + strand, within MPMX19_05322at 863.256 kb on + strand, within MPMX19_05322at 863.257 kb on - strand, within MPMX19_05322at 863.257 kb on - strand, within MPMX19_05322at 863.257 kb on - strand, within MPMX19_05322at 863.257 kb on - strand, within MPMX19_05322at 863.257 kb on - strand, within MPMX19_05322at 863.257 kb on - strand, within MPMX19_05322at 863.356 kb on + strand, within MPMX19_05322at 863.357 kb on - strand, within MPMX19_05322at 863.357 kb on - strand, within MPMX19_05322at 863.357 kb on - strand, within MPMX19_05322at 863.526 kb on + strand, within MPMX19_05322at 863.526 kb on + strand, within MPMX19_05322at 863.526 kb on + strand, within MPMX19_05322at 863.526 kb on + strand, within MPMX19_05322at 863.526 kb on + strand, within MPMX19_05322at 863.526 kb on + strand, within MPMX19_05322at 863.527 kb on - strand, within MPMX19_05322at 863.527 kb on - strand, within MPMX19_05322at 863.527 kb on - strand, within MPMX19_05322at 863.527 kb on - strand, within MPMX19_05322at 863.779 kb on + strandat 863.779 kb on + strandat 863.779 kb on + strandat 863.780 kb on - strandat 863.780 kb on - strandat 863.780 kb on - strandat 863.780 kb on - strandat 863.780 kb on - strandat 863.794 kb on + strandat 863.795 kb on - strandat 863.795 kb on - strandat 863.795 kb on - strandat 863.845 kb on + strandat 863.845 kb on + strandat 863.846 kb on - strandat 863.859 kb on + strandat 863.859 kb on + strandat 863.860 kb on - strandat 863.860 kb on - strandat 863.860 kb on - strandat 863.860 kb on - strandat 863.860 kb on - strandat 863.860 kb on - strandat 863.860 kb on - strandat 864.023 kb on + strand, within MPMX19_05323at 864.024 kb on - strand, within MPMX19_05323at 864.024 kb on - strand, within MPMX19_05323at 864.032 kb on - strand, within MPMX19_05323at 864.371 kb on + strand, within MPMX19_05323at 864.371 kb on + strand, within MPMX19_05323at 864.372 kb on - strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.521 kb on + strand, within MPMX19_05323at 864.522 kb on - strand, within MPMX19_05323at 864.522 kb on - strand, within MPMX19_05323at 864.522 kb on - strand, within MPMX19_05323at 864.522 kb on - strand, within MPMX19_05323at 864.522 kb on - strand, within MPMX19_05323at 864.522 kb on - strand, within MPMX19_05323

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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861,777 + MPMX19_05321 0.49 -1.3
861,778 - MPMX19_05321 0.49 -1.1
861,778 - MPMX19_05321 0.49 -0.1
861,778 - MPMX19_05321 0.49 +0.8
861,778 - MPMX19_05321 0.49 -0.2
861,778 - MPMX19_05321 0.49 -1.2
861,966 + MPMX19_05321 0.62 -1.0
861,966 + MPMX19_05321 0.62 -0.7
861,966 + MPMX19_05321 0.62 +0.3
861,967 - MPMX19_05321 0.62 +0.6
861,967 - MPMX19_05321 0.62 -0.3
861,967 - MPMX19_05321 0.62 +0.6
862,164 + MPMX19_05321 0.75 +0.4
862,164 + MPMX19_05321 0.75 +0.2
862,164 + MPMX19_05321 0.75 +0.4
862,165 - MPMX19_05321 0.75 +0.3
862,284 + MPMX19_05321 0.83 -1.0
862,284 + MPMX19_05321 0.83 -1.1
862,284 + MPMX19_05321 0.83 +0.3
862,284 + MPMX19_05321 0.83 -1.2
862,284 + MPMX19_05321 0.83 +0.8
862,284 + MPMX19_05321 0.83 +0.1
862,284 + MPMX19_05321 0.83 -1.0
862,284 + MPMX19_05321 0.83 +1.3
862,284 + MPMX19_05321 0.83 -0.4
862,284 + MPMX19_05321 0.83 +0.7
862,284 + MPMX19_05321 0.83 -1.0
862,285 - MPMX19_05321 0.84 -0.6
862,285 - MPMX19_05321 0.84 +1.8
862,285 - MPMX19_05321 0.84 +1.4
862,285 - MPMX19_05321 0.84 -2.2
862,285 - MPMX19_05321 0.84 -0.3
862,285 - MPMX19_05321 0.84 -0.8
862,285 - MPMX19_05321 0.84 -0.1
862,285 - MPMX19_05321 0.84 -0.3
862,285 - MPMX19_05321 0.84 -1.2
862,285 - MPMX19_05321 0.84 +1.0
862,341 + MPMX19_05321 0.87 +0.4
862,341 + MPMX19_05321 0.87 -0.3
862,341 + MPMX19_05321 0.87 +1.0
862,342 - MPMX19_05321 0.87 -1.1
862,342 - MPMX19_05321 0.87 -1.3
862,342 - MPMX19_05321 0.87 +0.0
862,512 + -0.4
862,513 - -1.0
862,513 - -0.6
862,513 - -0.1
862,513 - +0.0
862,513 - +0.3
862,513 - +1.3
862,513 - +1.3
862,513 - -1.7
862,513 - -0.4
862,534 - -0.2
862,693 + MPMX19_05322 0.13 +1.0
862,693 + MPMX19_05322 0.13 +1.5
862,693 + MPMX19_05322 0.13 +0.6
862,693 + MPMX19_05322 0.13 +0.1
862,694 - MPMX19_05322 0.13 -0.7
862,694 - MPMX19_05322 0.13 -0.8
862,694 - MPMX19_05322 0.13 +2.0
862,783 + MPMX19_05322 0.20 -1.6
862,783 + MPMX19_05322 0.20 -0.6
862,783 + MPMX19_05322 0.20 -0.5
862,784 - MPMX19_05322 0.21 +0.4
862,813 + MPMX19_05322 0.23 +0.2
862,813 + MPMX19_05322 0.23 -1.1
862,813 + MPMX19_05322 0.23 +0.0
862,813 + MPMX19_05322 0.23 -1.0
862,813 + MPMX19_05322 0.23 -1.4
862,879 + MPMX19_05322 0.28 -0.1
862,961 - MPMX19_05322 0.34 +0.7
863,113 + MPMX19_05322 0.46 +0.4
863,113 + MPMX19_05322 0.46 +0.1
863,113 + MPMX19_05322 0.46 +1.8
863,113 + MPMX19_05322 0.46 +0.4
863,113 + MPMX19_05322 0.46 -0.6
863,114 - MPMX19_05322 0.46 -1.2
863,114 - MPMX19_05322 0.46 -0.2
863,114 - MPMX19_05322 0.46 -0.8
863,256 + MPMX19_05322 0.58 -1.1
863,256 + MPMX19_05322 0.58 +0.4
863,257 - MPMX19_05322 0.58 -0.4
863,257 - MPMX19_05322 0.58 -0.2
863,257 - MPMX19_05322 0.58 +0.8
863,257 - MPMX19_05322 0.58 -0.1
863,257 - MPMX19_05322 0.58 +2.0
863,257 - MPMX19_05322 0.58 +0.4
863,356 + MPMX19_05322 0.65 +0.4
863,357 - MPMX19_05322 0.65 -1.4
863,357 - MPMX19_05322 0.65 -0.9
863,357 - MPMX19_05322 0.65 +1.0
863,526 + MPMX19_05322 0.79 -1.8
863,526 + MPMX19_05322 0.79 +0.4
863,526 + MPMX19_05322 0.79 -0.5
863,526 + MPMX19_05322 0.79 +0.7
863,526 + MPMX19_05322 0.79 -2.4
863,526 + MPMX19_05322 0.79 +0.2
863,527 - MPMX19_05322 0.79 +1.4
863,527 - MPMX19_05322 0.79 +0.6
863,527 - MPMX19_05322 0.79 -0.3
863,527 - MPMX19_05322 0.79 +0.0
863,779 + -0.6
863,779 + +0.3
863,779 + +1.1
863,780 - -0.3
863,780 - -0.1
863,780 - +0.8
863,780 - -0.4
863,780 - +0.1
863,794 + -0.4
863,795 - -0.7
863,795 - -0.3
863,795 - +0.6
863,845 + -0.1
863,845 + +0.0
863,846 - -0.8
863,859 + +0.3
863,859 + +0.6
863,860 - +0.2
863,860 - +0.0
863,860 - -1.0
863,860 - +0.0
863,860 - +0.0
863,860 - +0.3
863,860 - -0.5
864,023 + MPMX19_05323 0.16 -0.4
864,024 - MPMX19_05323 0.16 -0.5
864,024 - MPMX19_05323 0.16 -0.6
864,032 - MPMX19_05323 0.17 +0.2
864,371 + MPMX19_05323 0.47 -0.1
864,371 + MPMX19_05323 0.47 -0.9
864,372 - MPMX19_05323 0.47 +1.2
864,521 + MPMX19_05323 0.60 -0.8
864,521 + MPMX19_05323 0.60 +0.4
864,521 + MPMX19_05323 0.60 -0.9
864,521 + MPMX19_05323 0.60 -0.3
864,521 + MPMX19_05323 0.60 +1.6
864,521 + MPMX19_05323 0.60 -1.5
864,521 + MPMX19_05323 0.60 -0.6
864,521 + MPMX19_05323 0.60 -0.2
864,521 + MPMX19_05323 0.60 -1.7
864,521 + MPMX19_05323 0.60 -0.3
864,521 + MPMX19_05323 0.60 -1.3
864,521 + MPMX19_05323 0.60 -0.7
864,521 + MPMX19_05323 0.60 -0.8
864,521 + MPMX19_05323 0.60 -0.6
864,521 + MPMX19_05323 0.60 +1.4
864,521 + MPMX19_05323 0.60 -1.0
864,521 + MPMX19_05323 0.60 -0.2
864,522 - MPMX19_05323 0.61 -0.8
864,522 - MPMX19_05323 0.61 +0.7
864,522 - MPMX19_05323 0.61 -1.0
864,522 - MPMX19_05323 0.61 -0.9
864,522 - MPMX19_05323 0.61 -0.9
864,522 - MPMX19_05323 0.61 -1.2

Or see this region's nucleotide sequence