Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05299

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05298 and MPMX19_05299 are separated by 166 nucleotidesMPMX19_05299 and MPMX19_05300 overlap by 4 nucleotides MPMX19_05298: MPMX19_05298 - Periplasmic [NiFeSe] hydrogenase large subunit, at 832,642 to 833,943 _05298 MPMX19_05299: MPMX19_05299 - Periplasmic [NiFeSe] hydrogenase small subunit, at 834,110 to 835,120 _05299 MPMX19_05300: MPMX19_05300 - Signal transduction histidine-protein kinase AtoS, at 835,117 to 836,472 _05300 Position (kb) 834 835 836Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 833.141 kb on + strand, within MPMX19_05298at 833.141 kb on + strand, within MPMX19_05298at 833.141 kb on + strand, within MPMX19_05298at 833.142 kb on - strand, within MPMX19_05298at 833.294 kb on + strand, within MPMX19_05298at 833.321 kb on + strand, within MPMX19_05298at 833.321 kb on + strand, within MPMX19_05298at 833.321 kb on + strand, within MPMX19_05298at 833.321 kb on + strand, within MPMX19_05298at 833.321 kb on + strand, within MPMX19_05298at 833.321 kb on + strand, within MPMX19_05298at 833.322 kb on - strand, within MPMX19_05298at 833.322 kb on - strand, within MPMX19_05298at 833.322 kb on - strand, within MPMX19_05298at 833.349 kb on - strand, within MPMX19_05298at 833.349 kb on - strand, within MPMX19_05298at 833.349 kb on - strand, within MPMX19_05298at 833.598 kb on + strand, within MPMX19_05298at 834.073 kb on + strandat 834.339 kb on + strand, within MPMX19_05299at 834.339 kb on + strand, within MPMX19_05299at 834.339 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.471 kb on + strand, within MPMX19_05299at 834.471 kb on + strand, within MPMX19_05299at 834.471 kb on + strand, within MPMX19_05299at 834.471 kb on + strand, within MPMX19_05299at 834.472 kb on - strand, within MPMX19_05299at 834.472 kb on - strand, within MPMX19_05299at 834.472 kb on - strand, within MPMX19_05299at 834.472 kb on - strand, within MPMX19_05299at 834.472 kb on - strand, within MPMX19_05299at 834.472 kb on - strand, within MPMX19_05299at 834.477 kb on + strand, within MPMX19_05299at 834.477 kb on + strand, within MPMX19_05299at 834.478 kb on - strand, within MPMX19_05299at 834.478 kb on - strand, within MPMX19_05299at 834.478 kb on - strand, within MPMX19_05299at 834.478 kb on - strand, within MPMX19_05299at 834.478 kb on - strand, within MPMX19_05299at 834.478 kb on - strand, within MPMX19_05299at 834.480 kb on + strand, within MPMX19_05299at 834.480 kb on + strand, within MPMX19_05299at 834.481 kb on - strand, within MPMX19_05299at 834.481 kb on - strand, within MPMX19_05299at 834.522 kb on + strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.540 kb on + strand, within MPMX19_05299at 834.540 kb on + strand, within MPMX19_05299at 834.540 kb on + strand, within MPMX19_05299at 834.540 kb on + strand, within MPMX19_05299at 834.540 kb on + strand, within MPMX19_05299at 834.541 kb on - strand, within MPMX19_05299at 834.702 kb on + strand, within MPMX19_05299at 834.702 kb on + strand, within MPMX19_05299at 834.702 kb on + strand, within MPMX19_05299at 834.702 kb on + strand, within MPMX19_05299at 834.703 kb on - strand, within MPMX19_05299at 834.703 kb on - strand, within MPMX19_05299at 834.703 kb on - strand, within MPMX19_05299at 834.703 kb on - strand, within MPMX19_05299at 834.703 kb on - strand, within MPMX19_05299at 835.232 kb on + strandat 835.232 kb on + strandat 835.232 kb on + strandat 835.232 kb on + strandat 835.232 kb on + strandat 835.233 kb on - strandat 835.233 kb on - strandat 835.233 kb on - strandat 835.233 kb on - strandat 835.233 kb on - strandat 835.765 kb on + strand, within MPMX19_05300at 835.765 kb on + strand, within MPMX19_05300at 835.765 kb on + strand, within MPMX19_05300at 835.765 kb on + strand, within MPMX19_05300at 835.765 kb on + strand, within MPMX19_05300at 835.765 kb on + strand, within MPMX19_05300at 835.765 kb on + strand, within MPMX19_05300at 835.766 kb on - strand, within MPMX19_05300at 835.766 kb on - strand, within MPMX19_05300at 835.770 kb on - strand, within MPMX19_05300at 835.790 kb on + strand, within MPMX19_05300at 835.791 kb on - strand, within MPMX19_05300at 835.817 kb on + strand, within MPMX19_05300at 835.817 kb on + strand, within MPMX19_05300at 836.021 kb on + strand, within MPMX19_05300at 836.022 kb on - strand, within MPMX19_05300

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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833,141 + MPMX19_05298 0.38 -0.4
833,141 + MPMX19_05298 0.38 -1.3
833,141 + MPMX19_05298 0.38 -0.2
833,142 - MPMX19_05298 0.38 +1.2
833,294 + MPMX19_05298 0.50 +2.3
833,321 + MPMX19_05298 0.52 +0.0
833,321 + MPMX19_05298 0.52 -0.7
833,321 + MPMX19_05298 0.52 +0.4
833,321 + MPMX19_05298 0.52 -2.9
833,321 + MPMX19_05298 0.52 -1.6
833,321 + MPMX19_05298 0.52 -1.3
833,322 - MPMX19_05298 0.52 +0.6
833,322 - MPMX19_05298 0.52 +0.6
833,322 - MPMX19_05298 0.52 -1.0
833,349 - MPMX19_05298 0.54 +0.4
833,349 - MPMX19_05298 0.54 -1.0
833,349 - MPMX19_05298 0.54 +0.7
833,598 + MPMX19_05298 0.73 -0.6
834,073 + -2.2
834,339 + MPMX19_05299 0.23 -1.8
834,339 + MPMX19_05299 0.23 -0.7
834,339 + MPMX19_05299 0.23 -0.6
834,421 + MPMX19_05299 0.31 -1.4
834,421 + MPMX19_05299 0.31 +0.6
834,421 + MPMX19_05299 0.31 -2.0
834,421 + MPMX19_05299 0.31 -0.7
834,421 + MPMX19_05299 0.31 -0.8
834,421 + MPMX19_05299 0.31 +0.2
834,421 + MPMX19_05299 0.31 +0.1
834,421 + MPMX19_05299 0.31 +0.4
834,422 - MPMX19_05299 0.31 -1.2
834,422 - MPMX19_05299 0.31 -1.0
834,422 - MPMX19_05299 0.31 +0.1
834,422 - MPMX19_05299 0.31 -2.0
834,422 - MPMX19_05299 0.31 +0.2
834,422 - MPMX19_05299 0.31 -1.4
834,422 - MPMX19_05299 0.31 -0.6
834,422 - MPMX19_05299 0.31 -0.2
834,471 + MPMX19_05299 0.36 +1.3
834,471 + MPMX19_05299 0.36 +0.7
834,471 + MPMX19_05299 0.36 -0.6
834,471 + MPMX19_05299 0.36 +1.0
834,472 - MPMX19_05299 0.36 +0.7
834,472 - MPMX19_05299 0.36 -1.5
834,472 - MPMX19_05299 0.36 +0.3
834,472 - MPMX19_05299 0.36 +1.0
834,472 - MPMX19_05299 0.36 -0.6
834,472 - MPMX19_05299 0.36 -2.1
834,477 + MPMX19_05299 0.36 +1.4
834,477 + MPMX19_05299 0.36 -0.9
834,478 - MPMX19_05299 0.36 +0.0
834,478 - MPMX19_05299 0.36 -1.3
834,478 - MPMX19_05299 0.36 -0.8
834,478 - MPMX19_05299 0.36 -1.2
834,478 - MPMX19_05299 0.36 +0.3
834,478 - MPMX19_05299 0.36 -2.2
834,480 + MPMX19_05299 0.37 -0.8
834,480 + MPMX19_05299 0.37 -1.3
834,481 - MPMX19_05299 0.37 +0.4
834,481 - MPMX19_05299 0.37 -0.3
834,522 + MPMX19_05299 0.41 -1.2
834,523 - MPMX19_05299 0.41 -1.3
834,523 - MPMX19_05299 0.41 -0.4
834,523 - MPMX19_05299 0.41 +0.0
834,523 - MPMX19_05299 0.41 +0.0
834,523 - MPMX19_05299 0.41 +1.4
834,523 - MPMX19_05299 0.41 -1.0
834,523 - MPMX19_05299 0.41 -1.6
834,523 - MPMX19_05299 0.41 -2.0
834,540 + MPMX19_05299 0.43 -1.0
834,540 + MPMX19_05299 0.43 -0.3
834,540 + MPMX19_05299 0.43 -0.3
834,540 + MPMX19_05299 0.43 +0.1
834,540 + MPMX19_05299 0.43 -0.3
834,541 - MPMX19_05299 0.43 -1.0
834,702 + MPMX19_05299 0.59 -0.3
834,702 + MPMX19_05299 0.59 -1.4
834,702 + MPMX19_05299 0.59 +0.1
834,702 + MPMX19_05299 0.59 -1.1
834,703 - MPMX19_05299 0.59 -1.2
834,703 - MPMX19_05299 0.59 -1.2
834,703 - MPMX19_05299 0.59 -0.9
834,703 - MPMX19_05299 0.59 -1.6
834,703 - MPMX19_05299 0.59 -0.5
835,232 + -0.2
835,232 + -0.6
835,232 + -2.0
835,232 + +0.7
835,232 + -0.8
835,233 - +0.8
835,233 - -1.4
835,233 - -0.4
835,233 - +0.0
835,233 - -0.6
835,765 + MPMX19_05300 0.48 +0.3
835,765 + MPMX19_05300 0.48 -0.2
835,765 + MPMX19_05300 0.48 -2.2
835,765 + MPMX19_05300 0.48 +0.1
835,765 + MPMX19_05300 0.48 -1.4
835,765 + MPMX19_05300 0.48 -1.2
835,765 + MPMX19_05300 0.48 -0.6
835,766 - MPMX19_05300 0.48 +1.4
835,766 - MPMX19_05300 0.48 -0.6
835,770 - MPMX19_05300 0.48 +0.0
835,790 + MPMX19_05300 0.50 -0.8
835,791 - MPMX19_05300 0.50 +0.0
835,817 + MPMX19_05300 0.52 +0.4
835,817 + MPMX19_05300 0.52 +1.0
836,021 + MPMX19_05300 0.67 -1.6
836,022 - MPMX19_05300 0.67 -0.3

Or see this region's nucleotide sequence