Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05298

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05297 and MPMX19_05298 are separated by 599 nucleotidesMPMX19_05298 and MPMX19_05299 are separated by 166 nucleotides MPMX19_05297: MPMX19_05297 - hypothetical protein, at 830,747 to 832,042 _05297 MPMX19_05298: MPMX19_05298 - Periplasmic [NiFeSe] hydrogenase large subunit, at 832,642 to 833,943 _05298 MPMX19_05299: MPMX19_05299 - Periplasmic [NiFeSe] hydrogenase small subunit, at 834,110 to 835,120 _05299 Position (kb) 832 833 834Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 831.662 kb on + strand, within MPMX19_05297at 831.662 kb on + strand, within MPMX19_05297at 831.662 kb on + strand, within MPMX19_05297at 831.662 kb on + strand, within MPMX19_05297at 831.663 kb on - strand, within MPMX19_05297at 831.771 kb on + strand, within MPMX19_05297at 831.771 kb on + strand, within MPMX19_05297at 831.771 kb on + strand, within MPMX19_05297at 831.771 kb on + strand, within MPMX19_05297at 831.771 kb on + strand, within MPMX19_05297at 831.772 kb on - strand, within MPMX19_05297at 831.772 kb on - strand, within MPMX19_05297at 831.772 kb on - strand, within MPMX19_05297at 831.772 kb on - strand, within MPMX19_05297at 831.772 kb on - strand, within MPMX19_05297at 831.772 kb on - strand, within MPMX19_05297at 831.772 kb on - strand, within MPMX19_05297at 831.772 kb on - strand, within MPMX19_05297at 831.846 kb on + strand, within MPMX19_05297at 831.846 kb on + strand, within MPMX19_05297at 831.847 kb on - strand, within MPMX19_05297at 831.847 kb on - strand, within MPMX19_05297at 831.847 kb on - strand, within MPMX19_05297at 831.847 kb on - strand, within MPMX19_05297at 832.128 kb on + strandat 832.197 kb on + strandat 832.210 kb on + strandat 832.210 kb on + strandat 832.211 kb on - strandat 832.211 kb on - strandat 832.211 kb on - strandat 832.251 kb on + strandat 832.344 kb on + strandat 832.345 kb on - strandat 832.442 kb on + strandat 832.443 kb on - strandat 832.463 kb on + strandat 832.463 kb on + strandat 832.463 kb on + strandat 832.463 kb on + strandat 832.463 kb on + strandat 832.463 kb on + strandat 832.463 kb on + strandat 832.464 kb on - strandat 832.464 kb on - strandat 832.464 kb on - strandat 832.464 kb on - strandat 832.464 kb on - strandat 832.464 kb on - strandat 832.464 kb on - strandat 832.464 kb on - strandat 832.464 kb on - strandat 832.464 kb on - strandat 832.464 kb on - strandat 832.464 kb on - strandat 832.464 kb on - strandat 832.464 kb on - strandat 832.464 kb on - strandat 832.549 kb on - strandat 832.549 kb on - strandat 832.549 kb on - strandat 832.657 kb on + strandat 832.657 kb on + strandat 832.657 kb on + strandat 832.657 kb on + strandat 832.657 kb on + strandat 832.658 kb on - strandat 832.723 kb on + strandat 833.102 kb on + strand, within MPMX19_05298at 833.103 kb on - strand, within MPMX19_05298at 833.103 kb on - strand, within MPMX19_05298at 833.103 kb on - strand, within MPMX19_05298at 833.103 kb on - strand, within MPMX19_05298at 833.141 kb on + strand, within MPMX19_05298at 833.141 kb on + strand, within MPMX19_05298at 833.141 kb on + strand, within MPMX19_05298at 833.142 kb on - strand, within MPMX19_05298at 833.294 kb on + strand, within MPMX19_05298at 833.321 kb on + strand, within MPMX19_05298at 833.321 kb on + strand, within MPMX19_05298at 833.321 kb on + strand, within MPMX19_05298at 833.321 kb on + strand, within MPMX19_05298at 833.321 kb on + strand, within MPMX19_05298at 833.321 kb on + strand, within MPMX19_05298at 833.322 kb on - strand, within MPMX19_05298at 833.322 kb on - strand, within MPMX19_05298at 833.322 kb on - strand, within MPMX19_05298at 833.349 kb on - strand, within MPMX19_05298at 833.349 kb on - strand, within MPMX19_05298at 833.349 kb on - strand, within MPMX19_05298at 833.598 kb on + strand, within MPMX19_05298at 834.073 kb on + strandat 834.339 kb on + strand, within MPMX19_05299at 834.339 kb on + strand, within MPMX19_05299at 834.339 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.421 kb on + strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.422 kb on - strand, within MPMX19_05299at 834.471 kb on + strand, within MPMX19_05299at 834.471 kb on + strand, within MPMX19_05299at 834.471 kb on + strand, within MPMX19_05299at 834.471 kb on + strand, within MPMX19_05299at 834.472 kb on - strand, within MPMX19_05299at 834.472 kb on - strand, within MPMX19_05299at 834.472 kb on - strand, within MPMX19_05299at 834.472 kb on - strand, within MPMX19_05299at 834.472 kb on - strand, within MPMX19_05299at 834.472 kb on - strand, within MPMX19_05299at 834.477 kb on + strand, within MPMX19_05299at 834.477 kb on + strand, within MPMX19_05299at 834.478 kb on - strand, within MPMX19_05299at 834.478 kb on - strand, within MPMX19_05299at 834.478 kb on - strand, within MPMX19_05299at 834.478 kb on - strand, within MPMX19_05299at 834.478 kb on - strand, within MPMX19_05299at 834.478 kb on - strand, within MPMX19_05299at 834.480 kb on + strand, within MPMX19_05299at 834.480 kb on + strand, within MPMX19_05299at 834.481 kb on - strand, within MPMX19_05299at 834.481 kb on - strand, within MPMX19_05299at 834.522 kb on + strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.523 kb on - strand, within MPMX19_05299at 834.540 kb on + strand, within MPMX19_05299at 834.540 kb on + strand, within MPMX19_05299at 834.540 kb on + strand, within MPMX19_05299at 834.540 kb on + strand, within MPMX19_05299at 834.540 kb on + strand, within MPMX19_05299at 834.541 kb on - strand, within MPMX19_05299at 834.702 kb on + strand, within MPMX19_05299at 834.702 kb on + strand, within MPMX19_05299at 834.702 kb on + strand, within MPMX19_05299at 834.702 kb on + strand, within MPMX19_05299at 834.703 kb on - strand, within MPMX19_05299at 834.703 kb on - strand, within MPMX19_05299at 834.703 kb on - strand, within MPMX19_05299at 834.703 kb on - strand, within MPMX19_05299at 834.703 kb on - strand, within MPMX19_05299

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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831,662 + MPMX19_05297 0.71 -1.3
831,662 + MPMX19_05297 0.71 +0.8
831,662 + MPMX19_05297 0.71 -1.1
831,662 + MPMX19_05297 0.71 -0.4
831,663 - MPMX19_05297 0.71 -1.3
831,771 + MPMX19_05297 0.79 -0.6
831,771 + MPMX19_05297 0.79 +0.4
831,771 + MPMX19_05297 0.79 -1.2
831,771 + MPMX19_05297 0.79 -0.8
831,771 + MPMX19_05297 0.79 -1.7
831,772 - MPMX19_05297 0.79 -0.2
831,772 - MPMX19_05297 0.79 -0.6
831,772 - MPMX19_05297 0.79 -1.3
831,772 - MPMX19_05297 0.79 -1.0
831,772 - MPMX19_05297 0.79 +1.0
831,772 - MPMX19_05297 0.79 -0.1
831,772 - MPMX19_05297 0.79 -1.9
831,772 - MPMX19_05297 0.79 -0.3
831,846 + MPMX19_05297 0.85 -2.3
831,846 + MPMX19_05297 0.85 +1.0
831,847 - MPMX19_05297 0.85 +0.1
831,847 - MPMX19_05297 0.85 -0.8
831,847 - MPMX19_05297 0.85 -1.3
831,847 - MPMX19_05297 0.85 -2.2
832,128 + -0.9
832,197 + +0.0
832,210 + +0.7
832,210 + -0.6
832,211 - -2.2
832,211 - -0.4
832,211 - -1.6
832,251 + -0.5
832,344 + -0.6
832,345 - -0.8
832,442 + +0.0
832,443 - +0.4
832,463 + -0.7
832,463 + +0.0
832,463 + -0.3
832,463 + -0.1
832,463 + -0.1
832,463 + -1.4
832,463 + -0.6
832,464 - -0.3
832,464 - -0.2
832,464 - -2.9
832,464 - +0.2
832,464 - -1.4
832,464 - -0.7
832,464 - +0.5
832,464 - +0.2
832,464 - -0.9
832,464 - -1.0
832,464 - -1.1
832,464 - -1.2
832,464 - -2.0
832,464 - -0.4
832,464 - +0.2
832,549 - -0.6
832,549 - -0.3
832,549 - -1.7
832,657 + -1.2
832,657 + +1.0
832,657 + +1.0
832,657 + -1.0
832,657 + -0.8
832,658 - -0.7
832,723 + -1.1
833,102 + MPMX19_05298 0.35 -2.2
833,103 - MPMX19_05298 0.35 +0.2
833,103 - MPMX19_05298 0.35 +0.4
833,103 - MPMX19_05298 0.35 +0.6
833,103 - MPMX19_05298 0.35 +0.3
833,141 + MPMX19_05298 0.38 -0.4
833,141 + MPMX19_05298 0.38 -1.3
833,141 + MPMX19_05298 0.38 -0.2
833,142 - MPMX19_05298 0.38 +1.2
833,294 + MPMX19_05298 0.50 +2.3
833,321 + MPMX19_05298 0.52 +0.0
833,321 + MPMX19_05298 0.52 -0.7
833,321 + MPMX19_05298 0.52 +0.4
833,321 + MPMX19_05298 0.52 -2.9
833,321 + MPMX19_05298 0.52 -1.6
833,321 + MPMX19_05298 0.52 -1.3
833,322 - MPMX19_05298 0.52 +0.6
833,322 - MPMX19_05298 0.52 +0.6
833,322 - MPMX19_05298 0.52 -1.0
833,349 - MPMX19_05298 0.54 +0.4
833,349 - MPMX19_05298 0.54 -1.0
833,349 - MPMX19_05298 0.54 +0.7
833,598 + MPMX19_05298 0.73 -0.6
834,073 + -2.2
834,339 + MPMX19_05299 0.23 -1.8
834,339 + MPMX19_05299 0.23 -0.7
834,339 + MPMX19_05299 0.23 -0.6
834,421 + MPMX19_05299 0.31 -1.4
834,421 + MPMX19_05299 0.31 +0.6
834,421 + MPMX19_05299 0.31 -2.0
834,421 + MPMX19_05299 0.31 -0.7
834,421 + MPMX19_05299 0.31 -0.8
834,421 + MPMX19_05299 0.31 +0.2
834,421 + MPMX19_05299 0.31 +0.1
834,421 + MPMX19_05299 0.31 +0.4
834,422 - MPMX19_05299 0.31 -1.2
834,422 - MPMX19_05299 0.31 -1.0
834,422 - MPMX19_05299 0.31 +0.1
834,422 - MPMX19_05299 0.31 -2.0
834,422 - MPMX19_05299 0.31 +0.2
834,422 - MPMX19_05299 0.31 -1.4
834,422 - MPMX19_05299 0.31 -0.6
834,422 - MPMX19_05299 0.31 -0.2
834,471 + MPMX19_05299 0.36 +1.3
834,471 + MPMX19_05299 0.36 +0.7
834,471 + MPMX19_05299 0.36 -0.6
834,471 + MPMX19_05299 0.36 +1.0
834,472 - MPMX19_05299 0.36 +0.7
834,472 - MPMX19_05299 0.36 -1.5
834,472 - MPMX19_05299 0.36 +0.3
834,472 - MPMX19_05299 0.36 +1.0
834,472 - MPMX19_05299 0.36 -0.6
834,472 - MPMX19_05299 0.36 -2.1
834,477 + MPMX19_05299 0.36 +1.4
834,477 + MPMX19_05299 0.36 -0.9
834,478 - MPMX19_05299 0.36 +0.0
834,478 - MPMX19_05299 0.36 -1.3
834,478 - MPMX19_05299 0.36 -0.8
834,478 - MPMX19_05299 0.36 -1.2
834,478 - MPMX19_05299 0.36 +0.3
834,478 - MPMX19_05299 0.36 -2.2
834,480 + MPMX19_05299 0.37 -0.8
834,480 + MPMX19_05299 0.37 -1.3
834,481 - MPMX19_05299 0.37 +0.4
834,481 - MPMX19_05299 0.37 -0.3
834,522 + MPMX19_05299 0.41 -1.2
834,523 - MPMX19_05299 0.41 -1.3
834,523 - MPMX19_05299 0.41 -0.4
834,523 - MPMX19_05299 0.41 +0.0
834,523 - MPMX19_05299 0.41 +0.0
834,523 - MPMX19_05299 0.41 +1.4
834,523 - MPMX19_05299 0.41 -1.0
834,523 - MPMX19_05299 0.41 -1.6
834,523 - MPMX19_05299 0.41 -2.0
834,540 + MPMX19_05299 0.43 -1.0
834,540 + MPMX19_05299 0.43 -0.3
834,540 + MPMX19_05299 0.43 -0.3
834,540 + MPMX19_05299 0.43 +0.1
834,540 + MPMX19_05299 0.43 -0.3
834,541 - MPMX19_05299 0.43 -1.0
834,702 + MPMX19_05299 0.59 -0.3
834,702 + MPMX19_05299 0.59 -1.4
834,702 + MPMX19_05299 0.59 +0.1
834,702 + MPMX19_05299 0.59 -1.1
834,703 - MPMX19_05299 0.59 -1.2
834,703 - MPMX19_05299 0.59 -1.2
834,703 - MPMX19_05299 0.59 -0.9
834,703 - MPMX19_05299 0.59 -1.6
834,703 - MPMX19_05299 0.59 -0.5

Or see this region's nucleotide sequence