Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05294

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05292 and MPMX19_05293 overlap by 4 nucleotidesMPMX19_05293 and MPMX19_05294 overlap by 4 nucleotidesMPMX19_05294 and MPMX19_05295 are separated by 4 nucleotidesMPMX19_05295 and MPMX19_05296 are separated by 19 nucleotides MPMX19_05292: MPMX19_05292 - hypothetical protein, at 827,405 to 828,241 _05292 MPMX19_05293: MPMX19_05293 - hypothetical protein, at 828,238 to 829,122 _05293 MPMX19_05294: MPMX19_05294 - hypothetical protein, at 829,119 to 829,547 _05294 MPMX19_05295: MPMX19_05295 - hypothetical protein, at 829,552 to 829,863 _05295 MPMX19_05296: MPMX19_05296 - Hydrogenase 1 maturation protease, at 829,883 to 830,533 _05296 Position (kb) 829 830Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 828.141 kb on + strand, within MPMX19_05292at 828.141 kb on + strand, within MPMX19_05292at 828.141 kb on + strand, within MPMX19_05292at 828.141 kb on + strand, within MPMX19_05292at 828.141 kb on + strand, within MPMX19_05292at 828.142 kb on - strand, within MPMX19_05292at 828.142 kb on - strand, within MPMX19_05292at 828.142 kb on - strand, within MPMX19_05292at 828.142 kb on - strand, within MPMX19_05292at 828.142 kb on - strand, within MPMX19_05292at 828.142 kb on - strand, within MPMX19_05292at 828.142 kb on - strand, within MPMX19_05292at 828.142 kb on - strand, within MPMX19_05292at 828.207 kb on + strandat 828.207 kb on + strandat 828.207 kb on + strandat 828.207 kb on + strandat 828.207 kb on + strandat 828.208 kb on - strandat 828.208 kb on - strandat 828.208 kb on - strandat 828.208 kb on - strandat 828.208 kb on - strandat 828.390 kb on - strand, within MPMX19_05293at 828.390 kb on - strand, within MPMX19_05293at 828.390 kb on - strand, within MPMX19_05293at 828.390 kb on - strand, within MPMX19_05293at 828.390 kb on - strand, within MPMX19_05293at 828.392 kb on + strand, within MPMX19_05293at 828.392 kb on + strand, within MPMX19_05293at 828.392 kb on + strand, within MPMX19_05293at 828.392 kb on + strand, within MPMX19_05293at 828.392 kb on + strand, within MPMX19_05293at 828.392 kb on + strand, within MPMX19_05293at 828.392 kb on + strand, within MPMX19_05293at 828.392 kb on + strand, within MPMX19_05293at 828.392 kb on + strand, within MPMX19_05293at 828.393 kb on - strand, within MPMX19_05293at 828.393 kb on - strand, within MPMX19_05293at 829.007 kb on + strand, within MPMX19_05293at 829.007 kb on + strand, within MPMX19_05293at 829.008 kb on - strand, within MPMX19_05293at 829.008 kb on - strand, within MPMX19_05293at 829.037 kb on + strandat 829.038 kb on - strandat 829.038 kb on - strandat 829.038 kb on - strandat 829.038 kb on - strandat 829.038 kb on - strandat 829.038 kb on - strandat 829.038 kb on - strandat 829.038 kb on - strandat 829.174 kb on + strand, within MPMX19_05294at 829.174 kb on + strand, within MPMX19_05294at 829.174 kb on + strand, within MPMX19_05294at 829.174 kb on + strand, within MPMX19_05294at 829.174 kb on + strand, within MPMX19_05294at 829.175 kb on - strand, within MPMX19_05294at 829.175 kb on - strand, within MPMX19_05294at 829.175 kb on - strand, within MPMX19_05294at 829.465 kb on + strand, within MPMX19_05294at 829.466 kb on - strand, within MPMX19_05294at 829.466 kb on - strand, within MPMX19_05294at 829.466 kb on - strand, within MPMX19_05294at 829.466 kb on - strand, within MPMX19_05294at 829.466 kb on - strand, within MPMX19_05294at 829.720 kb on - strand, within MPMX19_05295at 829.720 kb on - strand, within MPMX19_05295at 829.720 kb on - strand, within MPMX19_05295at 829.968 kb on + strand, within MPMX19_05296at 829.968 kb on + strand, within MPMX19_05296at 829.968 kb on + strand, within MPMX19_05296at 829.969 kb on - strand, within MPMX19_05296at 829.969 kb on - strand, within MPMX19_05296at 829.969 kb on - strand, within MPMX19_05296at 829.969 kb on - strand, within MPMX19_05296at 829.969 kb on - strand, within MPMX19_05296at 830.118 kb on + strand, within MPMX19_05296at 830.118 kb on + strand, within MPMX19_05296at 830.118 kb on + strand, within MPMX19_05296at 830.119 kb on - strand, within MPMX19_05296at 830.119 kb on - strand, within MPMX19_05296at 830.180 kb on + strand, within MPMX19_05296at 830.180 kb on + strand, within MPMX19_05296at 830.180 kb on + strand, within MPMX19_05296at 830.181 kb on - strand, within MPMX19_05296at 830.181 kb on - strand, within MPMX19_05296at 830.181 kb on - strand, within MPMX19_05296at 830.181 kb on - strand, within MPMX19_05296at 830.301 kb on + strand, within MPMX19_05296at 830.358 kb on + strand, within MPMX19_05296at 830.358 kb on + strand, within MPMX19_05296at 830.358 kb on + strand, within MPMX19_05296at 830.358 kb on + strand, within MPMX19_05296at 830.358 kb on + strand, within MPMX19_05296at 830.358 kb on + strand, within MPMX19_05296at 830.359 kb on - strand, within MPMX19_05296at 830.359 kb on - strand, within MPMX19_05296at 830.359 kb on - strand, within MPMX19_05296at 830.359 kb on - strand, within MPMX19_05296at 830.359 kb on - strand, within MPMX19_05296at 830.359 kb on - strand, within MPMX19_05296at 830.359 kb on - strand, within MPMX19_05296at 830.359 kb on - strand, within MPMX19_05296

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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828,141 + MPMX19_05292 0.88 +0.3
828,141 + MPMX19_05292 0.88 -0.6
828,141 + MPMX19_05292 0.88 -1.8
828,141 + MPMX19_05292 0.88 +0.7
828,141 + MPMX19_05292 0.88 -0.1
828,142 - MPMX19_05292 0.88 -1.2
828,142 - MPMX19_05292 0.88 +0.3
828,142 - MPMX19_05292 0.88 +0.3
828,142 - MPMX19_05292 0.88 -1.2
828,142 - MPMX19_05292 0.88 -0.1
828,142 - MPMX19_05292 0.88 +0.2
828,142 - MPMX19_05292 0.88 -0.1
828,142 - MPMX19_05292 0.88 -1.7
828,207 + -0.8
828,207 + -1.2
828,207 + -0.3
828,207 + +0.0
828,207 + -1.9
828,208 - -0.3
828,208 - -1.6
828,208 - -0.1
828,208 - -1.3
828,208 - +0.8
828,390 - MPMX19_05293 0.17 -0.6
828,390 - MPMX19_05293 0.17 -1.1
828,390 - MPMX19_05293 0.17 -0.6
828,390 - MPMX19_05293 0.17 -1.2
828,390 - MPMX19_05293 0.17 -1.8
828,392 + MPMX19_05293 0.17 +0.8
828,392 + MPMX19_05293 0.17 -0.4
828,392 + MPMX19_05293 0.17 -0.3
828,392 + MPMX19_05293 0.17 +0.6
828,392 + MPMX19_05293 0.17 +1.0
828,392 + MPMX19_05293 0.17 -0.9
828,392 + MPMX19_05293 0.17 -1.2
828,392 + MPMX19_05293 0.17 -1.7
828,392 + MPMX19_05293 0.17 +0.3
828,393 - MPMX19_05293 0.18 -0.4
828,393 - MPMX19_05293 0.18 +0.7
829,007 + MPMX19_05293 0.87 -0.6
829,007 + MPMX19_05293 0.87 -1.0
829,008 - MPMX19_05293 0.87 -1.7
829,008 - MPMX19_05293 0.87 -0.1
829,037 + +0.2
829,038 - -1.6
829,038 - -0.6
829,038 - -0.9
829,038 - +0.0
829,038 - -1.4
829,038 - +1.0
829,038 - +0.0
829,038 - -0.3
829,174 + MPMX19_05294 0.13 -1.2
829,174 + MPMX19_05294 0.13 -0.9
829,174 + MPMX19_05294 0.13 -0.6
829,174 + MPMX19_05294 0.13 -1.5
829,174 + MPMX19_05294 0.13 -0.6
829,175 - MPMX19_05294 0.13 +1.0
829,175 - MPMX19_05294 0.13 -1.2
829,175 - MPMX19_05294 0.13 -2.6
829,465 + MPMX19_05294 0.81 -0.6
829,466 - MPMX19_05294 0.81 -0.6
829,466 - MPMX19_05294 0.81 -1.2
829,466 - MPMX19_05294 0.81 -1.9
829,466 - MPMX19_05294 0.81 -1.4
829,466 - MPMX19_05294 0.81 -3.1
829,720 - MPMX19_05295 0.54 -0.9
829,720 - MPMX19_05295 0.54 +1.0
829,720 - MPMX19_05295 0.54 +0.4
829,968 + MPMX19_05296 0.13 -0.4
829,968 + MPMX19_05296 0.13 +0.0
829,968 + MPMX19_05296 0.13 +0.0
829,969 - MPMX19_05296 0.13 -3.1
829,969 - MPMX19_05296 0.13 -1.0
829,969 - MPMX19_05296 0.13 -1.2
829,969 - MPMX19_05296 0.13 +0.4
829,969 - MPMX19_05296 0.13 -0.8
830,118 + MPMX19_05296 0.36 +0.5
830,118 + MPMX19_05296 0.36 +0.2
830,118 + MPMX19_05296 0.36 -1.2
830,119 - MPMX19_05296 0.36 -0.2
830,119 - MPMX19_05296 0.36 +0.1
830,180 + MPMX19_05296 0.46 +2.0
830,180 + MPMX19_05296 0.46 +0.7
830,180 + MPMX19_05296 0.46 -0.9
830,181 - MPMX19_05296 0.46 -0.2
830,181 - MPMX19_05296 0.46 -1.1
830,181 - MPMX19_05296 0.46 -0.4
830,181 - MPMX19_05296 0.46 -0.5
830,301 + MPMX19_05296 0.64 -0.4
830,358 + MPMX19_05296 0.73 +0.1
830,358 + MPMX19_05296 0.73 -0.6
830,358 + MPMX19_05296 0.73 -0.6
830,358 + MPMX19_05296 0.73 +0.8
830,358 + MPMX19_05296 0.73 -0.2
830,358 + MPMX19_05296 0.73 +1.0
830,359 - MPMX19_05296 0.73 -0.5
830,359 - MPMX19_05296 0.73 -0.3
830,359 - MPMX19_05296 0.73 -1.2
830,359 - MPMX19_05296 0.73 -0.2
830,359 - MPMX19_05296 0.73 -0.9
830,359 - MPMX19_05296 0.73 -0.2
830,359 - MPMX19_05296 0.73 +1.0
830,359 - MPMX19_05296 0.73 -0.2

Or see this region's nucleotide sequence