Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05267 and MPMX19_05268 overlap by 4 nucleotides MPMX19_05268 and MPMX19_05269 overlap by 4 nucleotides MPMX19_05269 and MPMX19_05270 are separated by 30 nucleotides MPMX19_05270 and MPMX19_05271 are separated by 95 nucleotides MPMX19_05271 and MPMX19_05272 are separated by 20 nucleotides
MPMX19_05267: MPMX19_05267 - Kynureninase, at 802,066 to 803,259
_05267
MPMX19_05268: MPMX19_05268 - Tryptophan 2,3-dioxygenase, at 803,256 to 804,107
_05268
MPMX19_05269: MPMX19_05269 - hypothetical protein, at 804,104 to 804,937
_05269
MPMX19_05270: MPMX19_05270 - hypothetical protein, at 804,968 to 805,495
_05270
MPMX19_05271: MPMX19_05271 - hypothetical protein, at 805,591 to 805,746
_05271
MPMX19_05272: MPMX19_05272 - hypothetical protein, at 805,767 to 806,069
_05272
Position (kb)
804
805 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.155 kb on - strand at 803.155 kb on - strand at 803.233 kb on + strand at 803.233 kb on + strand at 803.234 kb on - strand at 803.271 kb on - strand at 803.283 kb on + strand at 803.283 kb on + strand at 803.283 kb on + strand at 803.283 kb on + strand at 803.284 kb on - strand at 803.334 kb on + strand at 803.335 kb on - strand at 803.343 kb on + strand, within MPMX19_05268 at 803.343 kb on + strand, within MPMX19_05268 at 803.344 kb on - strand, within MPMX19_05268 at 803.344 kb on - strand, within MPMX19_05268 at 803.344 kb on - strand, within MPMX19_05268 at 803.344 kb on - strand, within MPMX19_05268 at 803.344 kb on - strand, within MPMX19_05268 at 803.344 kb on - strand, within MPMX19_05268 at 803.347 kb on + strand, within MPMX19_05268 at 803.347 kb on + strand, within MPMX19_05268 at 803.347 kb on + strand, within MPMX19_05268 at 803.347 kb on + strand, within MPMX19_05268 at 803.348 kb on - strand, within MPMX19_05268 at 803.348 kb on - strand, within MPMX19_05268 at 803.348 kb on - strand, within MPMX19_05268 at 803.387 kb on + strand, within MPMX19_05268 at 803.387 kb on + strand, within MPMX19_05268 at 803.388 kb on - strand, within MPMX19_05268 at 803.388 kb on - strand, within MPMX19_05268 at 803.388 kb on - strand, within MPMX19_05268 at 803.388 kb on - strand, within MPMX19_05268 at 803.388 kb on - strand, within MPMX19_05268 at 803.388 kb on - strand, within MPMX19_05268 at 803.457 kb on + strand, within MPMX19_05268 at 803.457 kb on + strand, within MPMX19_05268 at 803.457 kb on + strand, within MPMX19_05268 at 803.457 kb on + strand, within MPMX19_05268 at 803.458 kb on - strand, within MPMX19_05268 at 803.458 kb on - strand, within MPMX19_05268 at 803.458 kb on - strand, within MPMX19_05268 at 803.458 kb on - strand, within MPMX19_05268 at 803.458 kb on - strand, within MPMX19_05268 at 803.595 kb on + strand, within MPMX19_05268 at 803.595 kb on + strand, within MPMX19_05268 at 803.595 kb on + strand, within MPMX19_05268 at 803.595 kb on + strand, within MPMX19_05268 at 803.595 kb on + strand, within MPMX19_05268 at 803.595 kb on + strand, within MPMX19_05268 at 803.595 kb on + strand, within MPMX19_05268 at 803.596 kb on - strand, within MPMX19_05268 at 803.596 kb on - strand, within MPMX19_05268 at 803.596 kb on - strand, within MPMX19_05268 at 803.596 kb on - strand, within MPMX19_05268 at 803.643 kb on + strand, within MPMX19_05268 at 803.643 kb on + strand, within MPMX19_05268 at 803.644 kb on - strand, within MPMX19_05268 at 803.763 kb on + strand, within MPMX19_05268 at 803.763 kb on + strand, within MPMX19_05268 at 803.763 kb on + strand, within MPMX19_05268 at 803.763 kb on + strand, within MPMX19_05268 at 803.763 kb on + strand, within MPMX19_05268 at 803.763 kb on + strand, within MPMX19_05268 at 803.764 kb on - strand, within MPMX19_05268 at 803.764 kb on - strand, within MPMX19_05268 at 803.886 kb on + strand, within MPMX19_05268 at 803.886 kb on + strand, within MPMX19_05268 at 803.886 kb on + strand, within MPMX19_05268 at 803.886 kb on + strand, within MPMX19_05268 at 803.886 kb on + strand, within MPMX19_05268 at 803.886 kb on + strand, within MPMX19_05268 at 803.887 kb on - strand, within MPMX19_05268 at 803.887 kb on - strand, within MPMX19_05268 at 803.887 kb on - strand, within MPMX19_05268 at 803.887 kb on - strand, within MPMX19_05268 at 803.916 kb on + strand, within MPMX19_05268 at 803.916 kb on + strand, within MPMX19_05268 at 803.916 kb on + strand, within MPMX19_05268 at 803.952 kb on + strand, within MPMX19_05268 at 803.952 kb on + strand, within MPMX19_05268 at 803.952 kb on + strand, within MPMX19_05268 at 803.953 kb on - strand, within MPMX19_05268 at 803.953 kb on - strand, within MPMX19_05268 at 803.953 kb on - strand, within MPMX19_05268 at 803.953 kb on - strand, within MPMX19_05268 at 803.953 kb on - strand, within MPMX19_05268 at 803.953 kb on - strand, within MPMX19_05268 at 804.042 kb on + strand at 804.042 kb on + strand at 804.042 kb on + strand at 804.143 kb on + strand at 804.143 kb on + strand at 804.144 kb on - strand at 804.144 kb on - strand at 804.144 kb on - strand at 804.144 kb on - strand at 804.180 kb on - strand at 804.260 kb on + strand, within MPMX19_05269 at 804.284 kb on + strand, within MPMX19_05269 at 804.284 kb on + strand, within MPMX19_05269 at 804.284 kb on + strand, within MPMX19_05269 at 804.284 kb on + strand, within MPMX19_05269 at 804.285 kb on - strand, within MPMX19_05269 at 804.428 kb on + strand, within MPMX19_05269 at 804.428 kb on + strand, within MPMX19_05269 at 804.428 kb on + strand, within MPMX19_05269 at 804.428 kb on + strand, within MPMX19_05269 at 804.428 kb on + strand, within MPMX19_05269 at 804.428 kb on + strand, within MPMX19_05269 at 804.428 kb on + strand, within MPMX19_05269 at 804.428 kb on + strand, within MPMX19_05269 at 804.428 kb on + strand, within MPMX19_05269 at 804.428 kb on + strand, within MPMX19_05269 at 804.429 kb on - strand, within MPMX19_05269 at 804.429 kb on - strand, within MPMX19_05269 at 804.429 kb on - strand, within MPMX19_05269 at 804.429 kb on - strand, within MPMX19_05269 at 804.429 kb on - strand, within MPMX19_05269 at 804.429 kb on - strand, within MPMX19_05269 at 804.429 kb on - strand, within MPMX19_05269 at 804.429 kb on - strand, within MPMX19_05269 at 804.429 kb on - strand, within MPMX19_05269 at 804.935 kb on + strand at 804.969 kb on + strand at 804.969 kb on + strand at 804.970 kb on - strand at 804.970 kb on - strand at 804.994 kb on - strand at 805.258 kb on + strand, within MPMX19_05270 at 805.258 kb on + strand, within MPMX19_05270 at 805.258 kb on + strand, within MPMX19_05270 at 805.258 kb on + strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.371 kb on + strand, within MPMX19_05270 at 805.371 kb on + strand, within MPMX19_05270 at 805.371 kb on + strand, within MPMX19_05270 at 805.372 kb on - strand, within MPMX19_05270 at 805.372 kb on - strand, within MPMX19_05270 at 805.372 kb on - strand, within MPMX19_05270 at 805.372 kb on - strand, within MPMX19_05270 at 805.540 kb on + strand at 805.540 kb on + strand at 805.540 kb on + strand at 805.540 kb on + strand at 805.540 kb on + strand at 805.540 kb on + strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.546 kb on + strand at 805.547 kb on - strand at 805.547 kb on - strand at 805.547 kb on - strand at 805.599 kb on + strand at 805.679 kb on + strand, within MPMX19_05271 at 805.679 kb on + strand, within MPMX19_05271 at 805.679 kb on + strand, within MPMX19_05271 at 805.679 kb on + strand, within MPMX19_05271 at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.892 kb on - strand, within MPMX19_05272 at 805.892 kb on - strand, within MPMX19_05272 at 805.892 kb on - strand, within MPMX19_05272 at 805.892 kb on - strand, within MPMX19_05272
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 803,152 + -1.5 803,152 + -0.4 803,152 + +1.0 803,152 + +0.0 803,152 + +0.8 803,152 + +0.7 803,152 + -0.4 803,152 + +1.0 803,152 + +0.9 803,152 + -0.9 803,152 + +0.4 803,152 + -1.2 803,152 + -1.4 803,152 + -1.3 803,152 + -1.2 803,152 + -0.2 803,152 + -1.7 803,152 + -0.7 803,152 + -0.6 803,153 - +0.6 803,153 - -1.4 803,153 - -1.9 803,153 - -0.1 803,153 - +1.3 803,153 - -1.4 803,153 - -0.8 803,153 - +0.0 803,153 - -0.2 803,153 - +1.0 803,153 - -0.2 803,153 - -2.2 803,153 - +0.4 803,153 - -0.2 803,153 - -1.2 803,155 - -1.9 803,155 - +0.9 803,233 + +0.9 803,233 + -1.3 803,234 - +1.8 803,271 - -1.2 803,283 + +0.1 803,283 + -0.3 803,283 + -1.2 803,283 + +1.4 803,284 - +1.4 803,334 + -1.2 803,335 - +0.7 803,343 + MPMX19_05268 0.10 +2.0 803,343 + MPMX19_05268 0.10 -0.2 803,344 - MPMX19_05268 0.10 -0.3 803,344 - MPMX19_05268 0.10 +0.0 803,344 - MPMX19_05268 0.10 -0.6 803,344 - MPMX19_05268 0.10 +0.7 803,344 - MPMX19_05268 0.10 -0.3 803,344 - MPMX19_05268 0.10 -1.2 803,347 + MPMX19_05268 0.11 +0.1 803,347 + MPMX19_05268 0.11 +0.3 803,347 + MPMX19_05268 0.11 -1.6 803,347 + MPMX19_05268 0.11 +0.0 803,348 - MPMX19_05268 0.11 +0.8 803,348 - MPMX19_05268 0.11 -1.8 803,348 - MPMX19_05268 0.11 -0.4 803,387 + MPMX19_05268 0.15 -0.2 803,387 + MPMX19_05268 0.15 -0.7 803,388 - MPMX19_05268 0.15 +1.4 803,388 - MPMX19_05268 0.15 -1.0 803,388 - MPMX19_05268 0.15 -0.2 803,388 - MPMX19_05268 0.15 -0.6 803,388 - MPMX19_05268 0.15 +1.2 803,388 - MPMX19_05268 0.15 -1.6 803,457 + MPMX19_05268 0.24 -0.6 803,457 + MPMX19_05268 0.24 +1.3 803,457 + MPMX19_05268 0.24 -0.4 803,457 + MPMX19_05268 0.24 -0.1 803,458 - MPMX19_05268 0.24 -1.3 803,458 - MPMX19_05268 0.24 -0.2 803,458 - MPMX19_05268 0.24 -1.0 803,458 - MPMX19_05268 0.24 +0.0 803,458 - MPMX19_05268 0.24 -1.5 803,595 + MPMX19_05268 0.40 -0.8 803,595 + MPMX19_05268 0.40 -1.7 803,595 + MPMX19_05268 0.40 -0.6 803,595 + MPMX19_05268 0.40 -1.0 803,595 + MPMX19_05268 0.40 +1.5 803,595 + MPMX19_05268 0.40 -2.4 803,595 + MPMX19_05268 0.40 -1.4 803,596 - MPMX19_05268 0.40 -0.8 803,596 - MPMX19_05268 0.40 +4.0 803,596 - MPMX19_05268 0.40 +0.7 803,596 - MPMX19_05268 0.40 +0.0 803,643 + MPMX19_05268 0.45 -0.9 803,643 + MPMX19_05268 0.45 -2.3 803,644 - MPMX19_05268 0.46 -0.2 803,763 + MPMX19_05268 0.60 -0.7 803,763 + MPMX19_05268 0.60 -0.7 803,763 + MPMX19_05268 0.60 +0.3 803,763 + MPMX19_05268 0.60 +0.3 803,763 + MPMX19_05268 0.60 -1.3 803,763 + MPMX19_05268 0.60 -0.6 803,764 - MPMX19_05268 0.60 -0.8 803,764 - MPMX19_05268 0.60 -1.3 803,886 + MPMX19_05268 0.74 +0.4 803,886 + MPMX19_05268 0.74 -0.8 803,886 + MPMX19_05268 0.74 +0.2 803,886 + MPMX19_05268 0.74 -0.3 803,886 + MPMX19_05268 0.74 -0.3 803,886 + MPMX19_05268 0.74 -0.1 803,887 - MPMX19_05268 0.74 -0.7 803,887 - MPMX19_05268 0.74 +0.3 803,887 - MPMX19_05268 0.74 -0.6 803,887 - MPMX19_05268 0.74 -1.5 803,916 + MPMX19_05268 0.77 -1.1 803,916 + MPMX19_05268 0.77 +1.0 803,916 + MPMX19_05268 0.77 +0.4 803,952 + MPMX19_05268 0.82 -0.9 803,952 + MPMX19_05268 0.82 -0.7 803,952 + MPMX19_05268 0.82 -0.1 803,953 - MPMX19_05268 0.82 +0.7 803,953 - MPMX19_05268 0.82 +0.2 803,953 - MPMX19_05268 0.82 -0.8 803,953 - MPMX19_05268 0.82 +0.1 803,953 - MPMX19_05268 0.82 -0.4 803,953 - MPMX19_05268 0.82 +0.6 804,042 + -1.5 804,042 + -0.1 804,042 + +0.5 804,143 + -1.8 804,143 + +0.9 804,144 - -0.3 804,144 - -1.3 804,144 - +2.0 804,144 - -0.2 804,180 - +2.0 804,260 + MPMX19_05269 0.19 +0.0 804,284 + MPMX19_05269 0.22 -1.9 804,284 + MPMX19_05269 0.22 -2.8 804,284 + MPMX19_05269 0.22 -0.2 804,284 + MPMX19_05269 0.22 +1.1 804,285 - MPMX19_05269 0.22 -1.0 804,428 + MPMX19_05269 0.39 -0.2 804,428 + MPMX19_05269 0.39 -0.3 804,428 + MPMX19_05269 0.39 -1.0 804,428 + MPMX19_05269 0.39 -1.2 804,428 + MPMX19_05269 0.39 -0.4 804,428 + MPMX19_05269 0.39 +0.1 804,428 + MPMX19_05269 0.39 -2.0 804,428 + MPMX19_05269 0.39 +0.2 804,428 + MPMX19_05269 0.39 +1.0 804,428 + MPMX19_05269 0.39 +2.2 804,429 - MPMX19_05269 0.39 -1.5 804,429 - MPMX19_05269 0.39 -1.0 804,429 - MPMX19_05269 0.39 +1.3 804,429 - MPMX19_05269 0.39 +1.0 804,429 - MPMX19_05269 0.39 +0.7 804,429 - MPMX19_05269 0.39 +1.3 804,429 - MPMX19_05269 0.39 -0.8 804,429 - MPMX19_05269 0.39 -0.6 804,429 - MPMX19_05269 0.39 -0.2 804,935 + +0.4 804,969 + -0.3 804,969 + -2.4 804,970 - +0.6 804,970 - -0.6 804,994 - +0.8 805,258 + MPMX19_05270 0.55 -2.4 805,258 + MPMX19_05270 0.55 -3.3 805,258 + MPMX19_05270 0.55 -0.8 805,258 + MPMX19_05270 0.55 -0.9 805,259 - MPMX19_05270 0.55 -1.2 805,259 - MPMX19_05270 0.55 +0.0 805,259 - MPMX19_05270 0.55 -0.4 805,259 - MPMX19_05270 0.55 +0.6 805,259 - MPMX19_05270 0.55 -1.0 805,259 - MPMX19_05270 0.55 -0.2 805,269 + MPMX19_05270 0.57 -0.3 805,269 + MPMX19_05270 0.57 +1.0 805,269 + MPMX19_05270 0.57 -0.9 805,269 + MPMX19_05270 0.57 +0.3 805,269 + MPMX19_05270 0.57 -1.4 805,270 - MPMX19_05270 0.57 +0.1 805,270 - MPMX19_05270 0.57 -1.1 805,270 - MPMX19_05270 0.57 -0.8 805,270 - MPMX19_05270 0.57 -1.7 805,270 - MPMX19_05270 0.57 -0.8 805,371 + MPMX19_05270 0.76 -1.3 805,371 + MPMX19_05270 0.76 -2.3 805,371 + MPMX19_05270 0.76 -0.5 805,372 - MPMX19_05270 0.77 -1.8 805,372 - MPMX19_05270 0.77 -1.4 805,372 - MPMX19_05270 0.77 +1.4 805,372 - MPMX19_05270 0.77 -0.1 805,540 + -1.0 805,540 + +2.6 805,540 + -1.3 805,540 + -2.2 805,540 + -0.2 805,540 + -1.5 805,541 - -0.8 805,541 - -0.6 805,541 - -0.5 805,541 - -1.3 805,541 - +0.4 805,541 - +0.0 805,541 - -0.8 805,541 - -1.2 805,546 + -1.0 805,547 - -0.6 805,547 - -0.2 805,547 - +0.8 805,599 + +1.0 805,679 + MPMX19_05271 0.56 -1.3 805,679 + MPMX19_05271 0.56 -0.8 805,679 + MPMX19_05271 0.56 -3.0 805,679 + MPMX19_05271 0.56 -0.9 805,734 + +0.9 805,734 + +0.2 805,734 + -0.9 805,734 + -2.9 805,734 + -1.1 805,734 + +0.3 805,734 + +0.4 805,735 - -0.8 805,735 - -1.3 805,735 - -1.3 805,735 - +0.4 805,735 - -0.9 805,735 - -1.9 805,735 - -0.9 805,891 + MPMX19_05272 0.41 -0.4 805,891 + MPMX19_05272 0.41 +0.4 805,891 + MPMX19_05272 0.41 +0.4 805,891 + MPMX19_05272 0.41 +1.2 805,891 + MPMX19_05272 0.41 -0.6 805,891 + MPMX19_05272 0.41 +0.3 805,892 - MPMX19_05272 0.41 -0.4 805,892 - MPMX19_05272 0.41 -1.3 805,892 - MPMX19_05272 0.41 -0.3 805,892 - MPMX19_05272 0.41 -1.7
Or see this region's nucleotide sequence