Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05261

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05260 and MPMX19_05261 overlap by 4 nucleotidesMPMX19_05261 and MPMX19_05262 are separated by 90 nucleotidesMPMX19_05262 and MPMX19_05263 are separated by 6 nucleotides MPMX19_05260: MPMX19_05260 - Cobalt-zinc-cadmium resistance protein CzcA, at 792,920 to 796,042 _05260 MPMX19_05261: MPMX19_05261 - Multidrug resistance protein MdtE, at 796,039 to 797,157 _05261 MPMX19_05262: MPMX19_05262 - hypothetical protein, at 797,248 to 797,880 _05262 MPMX19_05263: MPMX19_05263 - hypothetical protein, at 797,887 to 799,308 _05263 Position (kb) 796 797 798Strain fitness (log2 ratio) -2 -1 0 1at 795.204 kb on + strand, within MPMX19_05260at 795.204 kb on + strand, within MPMX19_05260at 795.205 kb on - strand, within MPMX19_05260at 795.205 kb on - strand, within MPMX19_05260at 795.205 kb on - strand, within MPMX19_05260at 795.205 kb on - strand, within MPMX19_05260at 795.205 kb on - strand, within MPMX19_05260at 795.216 kb on + strand, within MPMX19_05260at 795.216 kb on + strand, within MPMX19_05260at 795.216 kb on + strand, within MPMX19_05260at 795.216 kb on + strand, within MPMX19_05260at 795.216 kb on + strand, within MPMX19_05260at 795.217 kb on - strand, within MPMX19_05260at 795.234 kb on + strand, within MPMX19_05260at 795.234 kb on + strand, within MPMX19_05260at 795.234 kb on + strand, within MPMX19_05260at 795.234 kb on + strand, within MPMX19_05260at 795.235 kb on - strand, within MPMX19_05260at 795.235 kb on - strand, within MPMX19_05260at 795.345 kb on + strand, within MPMX19_05260at 795.345 kb on + strand, within MPMX19_05260at 795.345 kb on + strand, within MPMX19_05260at 795.345 kb on + strand, within MPMX19_05260at 795.345 kb on + strand, within MPMX19_05260at 795.345 kb on + strand, within MPMX19_05260at 795.345 kb on + strand, within MPMX19_05260at 795.346 kb on - strand, within MPMX19_05260at 795.346 kb on - strand, within MPMX19_05260at 795.346 kb on - strand, within MPMX19_05260at 795.346 kb on - strand, within MPMX19_05260at 795.346 kb on - strand, within MPMX19_05260at 795.346 kb on - strand, within MPMX19_05260at 795.346 kb on - strand, within MPMX19_05260at 795.346 kb on - strand, within MPMX19_05260at 795.346 kb on - strand, within MPMX19_05260at 795.346 kb on - strand, within MPMX19_05260at 795.346 kb on - strand, within MPMX19_05260at 795.471 kb on + strand, within MPMX19_05260at 795.471 kb on + strand, within MPMX19_05260at 795.471 kb on + strand, within MPMX19_05260at 795.471 kb on + strand, within MPMX19_05260at 795.471 kb on + strand, within MPMX19_05260at 795.472 kb on - strand, within MPMX19_05260at 795.472 kb on - strand, within MPMX19_05260at 795.472 kb on - strand, within MPMX19_05260at 795.472 kb on - strand, within MPMX19_05260at 795.472 kb on - strand, within MPMX19_05260at 795.472 kb on - strand, within MPMX19_05260at 795.472 kb on - strand, within MPMX19_05260at 795.472 kb on - strand, within MPMX19_05260at 795.600 kb on + strand, within MPMX19_05260at 795.600 kb on + strand, within MPMX19_05260at 795.600 kb on + strand, within MPMX19_05260at 795.600 kb on + strand, within MPMX19_05260at 795.600 kb on + strand, within MPMX19_05260at 795.600 kb on + strand, within MPMX19_05260at 795.601 kb on - strand, within MPMX19_05260at 795.601 kb on - strand, within MPMX19_05260at 795.601 kb on - strand, within MPMX19_05260at 795.601 kb on - strand, within MPMX19_05260at 795.601 kb on - strand, within MPMX19_05260at 795.601 kb on - strand, within MPMX19_05260at 795.601 kb on - strand, within MPMX19_05260at 795.601 kb on - strand, within MPMX19_05260at 795.605 kb on - strand, within MPMX19_05260at 795.605 kb on - strand, within MPMX19_05260at 795.612 kb on + strand, within MPMX19_05260at 795.612 kb on + strand, within MPMX19_05260at 795.613 kb on - strand, within MPMX19_05260at 795.613 kb on - strand, within MPMX19_05260at 795.669 kb on + strand, within MPMX19_05260at 795.670 kb on - strand, within MPMX19_05260at 795.670 kb on - strand, within MPMX19_05260at 795.702 kb on + strand, within MPMX19_05260at 795.703 kb on - strand, within MPMX19_05260at 795.703 kb on - strand, within MPMX19_05260at 795.780 kb on + strandat 795.780 kb on + strandat 795.780 kb on + strandat 795.780 kb on + strandat 795.780 kb on + strandat 795.781 kb on - strandat 795.781 kb on - strandat 795.781 kb on - strandat 795.798 kb on + strandat 795.798 kb on + strandat 795.798 kb on + strandat 795.798 kb on + strandat 795.798 kb on + strandat 795.798 kb on + strandat 795.798 kb on + strandat 795.798 kb on + strandat 795.799 kb on - strandat 795.799 kb on - strandat 795.799 kb on - strandat 795.799 kb on - strandat 795.799 kb on - strandat 795.799 kb on - strandat 795.799 kb on - strandat 795.799 kb on - strandat 795.799 kb on - strandat 795.799 kb on - strandat 795.799 kb on - strandat 795.801 kb on + strandat 795.801 kb on + strandat 795.802 kb on - strandat 795.802 kb on - strandat 795.802 kb on - strandat 795.802 kb on - strandat 795.942 kb on + strandat 795.942 kb on + strandat 795.942 kb on + strandat 795.942 kb on + strandat 796.160 kb on + strand, within MPMX19_05261at 796.160 kb on + strand, within MPMX19_05261at 796.161 kb on - strand, within MPMX19_05261at 796.622 kb on + strand, within MPMX19_05261at 796.622 kb on + strand, within MPMX19_05261at 796.622 kb on + strand, within MPMX19_05261at 796.622 kb on + strand, within MPMX19_05261at 796.622 kb on + strand, within MPMX19_05261at 796.623 kb on - strand, within MPMX19_05261at 796.623 kb on - strand, within MPMX19_05261at 796.623 kb on - strand, within MPMX19_05261at 796.623 kb on - strand, within MPMX19_05261at 796.623 kb on - strand, within MPMX19_05261at 796.623 kb on - strand, within MPMX19_05261at 796.623 kb on - strand, within MPMX19_05261at 796.712 kb on + strand, within MPMX19_05261at 796.712 kb on + strand, within MPMX19_05261at 796.713 kb on - strand, within MPMX19_05261at 796.713 kb on - strand, within MPMX19_05261at 796.713 kb on - strand, within MPMX19_05261at 796.713 kb on - strand, within MPMX19_05261at 796.754 kb on + strand, within MPMX19_05261at 796.755 kb on - strand, within MPMX19_05261at 797.158 kb on - strandat 797.158 kb on - strandat 797.158 kb on - strandat 797.158 kb on - strandat 797.159 kb on - strandat 797.185 kb on + strandat 797.186 kb on - strandat 797.186 kb on - strandat 797.186 kb on - strandat 797.190 kb on + strandat 797.190 kb on + strandat 797.191 kb on - strandat 797.191 kb on - strandat 797.191 kb on - strandat 797.197 kb on - strandat 797.204 kb on + strandat 797.205 kb on - strandat 797.205 kb on - strandat 797.239 kb on + strandat 797.240 kb on - strandat 797.240 kb on - strandat 797.240 kb on - strandat 797.351 kb on - strand, within MPMX19_05262at 797.410 kb on + strand, within MPMX19_05262at 797.410 kb on + strand, within MPMX19_05262at 797.410 kb on + strand, within MPMX19_05262at 797.410 kb on + strand, within MPMX19_05262at 797.411 kb on - strand, within MPMX19_05262at 797.411 kb on - strand, within MPMX19_05262at 797.411 kb on - strand, within MPMX19_05262at 797.411 kb on - strand, within MPMX19_05262at 797.411 kb on - strand, within MPMX19_05262at 797.411 kb on - strand, within MPMX19_05262at 797.411 kb on - strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.441 kb on - strand, within MPMX19_05262at 797.441 kb on - strand, within MPMX19_05262at 797.441 kb on - strand, within MPMX19_05262at 797.441 kb on - strand, within MPMX19_05262at 797.638 kb on + strand, within MPMX19_05262at 797.638 kb on + strand, within MPMX19_05262at 797.639 kb on - strand, within MPMX19_05262at 797.639 kb on - strand, within MPMX19_05262at 797.639 kb on - strand, within MPMX19_05262at 797.776 kb on + strand, within MPMX19_05262at 797.776 kb on + strand, within MPMX19_05262at 797.776 kb on + strand, within MPMX19_05262at 797.777 kb on - strand, within MPMX19_05262at 797.777 kb on - strand, within MPMX19_05262at 797.789 kb on + strand, within MPMX19_05262at 797.789 kb on + strand, within MPMX19_05262at 797.789 kb on + strand, within MPMX19_05262at 797.790 kb on - strand, within MPMX19_05262at 797.888 kb on + strandat 797.889 kb on - strandat 797.903 kb on + strandat 797.903 kb on + strandat 797.903 kb on + strandat 797.904 kb on - strandat 798.062 kb on + strand, within MPMX19_05263at 798.063 kb on - strand, within MPMX19_05263at 798.063 kb on - strand, within MPMX19_05263at 798.063 kb on - strand, within MPMX19_05263at 798.080 kb on + strand, within MPMX19_05263at 798.080 kb on + strand, within MPMX19_05263at 798.081 kb on - strand, within MPMX19_05263at 798.081 kb on - strand, within MPMX19_05263at 798.081 kb on - strand, within MPMX19_05263

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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795,204 + MPMX19_05260 0.73 -0.3
795,204 + MPMX19_05260 0.73 -0.0
795,205 - MPMX19_05260 0.73 -1.4
795,205 - MPMX19_05260 0.73 +0.2
795,205 - MPMX19_05260 0.73 -0.2
795,205 - MPMX19_05260 0.73 -0.7
795,205 - MPMX19_05260 0.73 -2.5
795,216 + MPMX19_05260 0.74 -2.2
795,216 + MPMX19_05260 0.74 -0.2
795,216 + MPMX19_05260 0.74 +0.0
795,216 + MPMX19_05260 0.74 -1.3
795,216 + MPMX19_05260 0.74 -0.4
795,217 - MPMX19_05260 0.74 -1.2
795,234 + MPMX19_05260 0.74 +0.0
795,234 + MPMX19_05260 0.74 -1.4
795,234 + MPMX19_05260 0.74 +0.0
795,234 + MPMX19_05260 0.74 +0.1
795,235 - MPMX19_05260 0.74 -2.3
795,235 - MPMX19_05260 0.74 -1.3
795,345 + MPMX19_05260 0.78 +0.0
795,345 + MPMX19_05260 0.78 +0.0
795,345 + MPMX19_05260 0.78 -0.3
795,345 + MPMX19_05260 0.78 -1.8
795,345 + MPMX19_05260 0.78 -2.2
795,345 + MPMX19_05260 0.78 -1.7
795,345 + MPMX19_05260 0.78 -0.8
795,346 - MPMX19_05260 0.78 -2.2
795,346 - MPMX19_05260 0.78 -0.2
795,346 - MPMX19_05260 0.78 -1.0
795,346 - MPMX19_05260 0.78 +0.1
795,346 - MPMX19_05260 0.78 -0.8
795,346 - MPMX19_05260 0.78 -1.2
795,346 - MPMX19_05260 0.78 +0.3
795,346 - MPMX19_05260 0.78 -0.6
795,346 - MPMX19_05260 0.78 -0.7
795,346 - MPMX19_05260 0.78 +0.4
795,346 - MPMX19_05260 0.78 +0.8
795,471 + MPMX19_05260 0.82 -0.8
795,471 + MPMX19_05260 0.82 -1.3
795,471 + MPMX19_05260 0.82 +0.8
795,471 + MPMX19_05260 0.82 -2.2
795,471 + MPMX19_05260 0.82 +0.4
795,472 - MPMX19_05260 0.82 -0.3
795,472 - MPMX19_05260 0.82 -0.4
795,472 - MPMX19_05260 0.82 -0.4
795,472 - MPMX19_05260 0.82 -2.2
795,472 - MPMX19_05260 0.82 +1.2
795,472 - MPMX19_05260 0.82 -1.1
795,472 - MPMX19_05260 0.82 -0.3
795,472 - MPMX19_05260 0.82 +1.4
795,600 + MPMX19_05260 0.86 -0.5
795,600 + MPMX19_05260 0.86 +0.0
795,600 + MPMX19_05260 0.86 -1.3
795,600 + MPMX19_05260 0.86 -0.3
795,600 + MPMX19_05260 0.86 -0.2
795,600 + MPMX19_05260 0.86 -1.2
795,601 - MPMX19_05260 0.86 -0.5
795,601 - MPMX19_05260 0.86 -0.7
795,601 - MPMX19_05260 0.86 +1.7
795,601 - MPMX19_05260 0.86 -0.7
795,601 - MPMX19_05260 0.86 +0.6
795,601 - MPMX19_05260 0.86 -2.3
795,601 - MPMX19_05260 0.86 -2.1
795,601 - MPMX19_05260 0.86 +1.7
795,605 - MPMX19_05260 0.86 -1.8
795,605 - MPMX19_05260 0.86 -0.3
795,612 + MPMX19_05260 0.86 -0.1
795,612 + MPMX19_05260 0.86 +0.5
795,613 - MPMX19_05260 0.86 +0.2
795,613 - MPMX19_05260 0.86 -1.3
795,669 + MPMX19_05260 0.88 -1.2
795,670 - MPMX19_05260 0.88 -0.3
795,670 - MPMX19_05260 0.88 +1.2
795,702 + MPMX19_05260 0.89 -0.3
795,703 - MPMX19_05260 0.89 -0.6
795,703 - MPMX19_05260 0.89 -2.6
795,780 + +0.4
795,780 + +0.0
795,780 + -0.4
795,780 + -1.2
795,780 + -0.7
795,781 - -0.9
795,781 - -0.6
795,781 - +0.7
795,798 + -0.3
795,798 + -0.5
795,798 + -0.6
795,798 + -1.3
795,798 + -1.2
795,798 + -0.4
795,798 + -0.1
795,798 + +0.1
795,799 - -0.1
795,799 - -1.0
795,799 - -0.9
795,799 - +0.8
795,799 - -2.2
795,799 - +0.4
795,799 - -2.2
795,799 - -1.4
795,799 - -0.7
795,799 - -0.9
795,799 - -0.8
795,801 + +0.0
795,801 + -0.4
795,802 - -0.3
795,802 - +0.8
795,802 - +1.0
795,802 - -0.7
795,942 + -0.1
795,942 + -1.2
795,942 + +0.2
795,942 + -0.1
796,160 + MPMX19_05261 0.11 -1.8
796,160 + MPMX19_05261 0.11 -0.8
796,161 - MPMX19_05261 0.11 -0.2
796,622 + MPMX19_05261 0.52 -1.2
796,622 + MPMX19_05261 0.52 -1.7
796,622 + MPMX19_05261 0.52 -0.3
796,622 + MPMX19_05261 0.52 -1.3
796,622 + MPMX19_05261 0.52 -1.8
796,623 - MPMX19_05261 0.52 +0.4
796,623 - MPMX19_05261 0.52 -0.2
796,623 - MPMX19_05261 0.52 +0.4
796,623 - MPMX19_05261 0.52 -2.2
796,623 - MPMX19_05261 0.52 +0.1
796,623 - MPMX19_05261 0.52 -2.0
796,623 - MPMX19_05261 0.52 -0.3
796,712 + MPMX19_05261 0.60 +1.3
796,712 + MPMX19_05261 0.60 -0.2
796,713 - MPMX19_05261 0.60 -0.8
796,713 - MPMX19_05261 0.60 -0.7
796,713 - MPMX19_05261 0.60 +0.8
796,713 - MPMX19_05261 0.60 -1.0
796,754 + MPMX19_05261 0.64 +0.2
796,755 - MPMX19_05261 0.64 +0.4
797,158 - +0.7
797,158 - -0.6
797,158 - -1.6
797,158 - -0.8
797,159 - +0.4
797,185 + -1.6
797,186 - -0.4
797,186 - -1.0
797,186 - -0.4
797,190 + -0.2
797,190 + -1.7
797,191 - -0.3
797,191 - -2.6
797,191 - +0.3
797,197 - +0.2
797,204 + -0.8
797,205 - +0.3
797,205 - -0.6
797,239 + +1.5
797,240 - +0.0
797,240 - -0.8
797,240 - -0.0
797,351 - MPMX19_05262 0.16 -0.1
797,410 + MPMX19_05262 0.26 +0.4
797,410 + MPMX19_05262 0.26 -1.0
797,410 + MPMX19_05262 0.26 -0.4
797,410 + MPMX19_05262 0.26 +0.3
797,411 - MPMX19_05262 0.26 +0.6
797,411 - MPMX19_05262 0.26 +0.8
797,411 - MPMX19_05262 0.26 +0.6
797,411 - MPMX19_05262 0.26 +1.6
797,411 - MPMX19_05262 0.26 -0.3
797,411 - MPMX19_05262 0.26 +1.0
797,411 - MPMX19_05262 0.26 -0.8
797,440 + MPMX19_05262 0.30 -0.8
797,440 + MPMX19_05262 0.30 -1.2
797,440 + MPMX19_05262 0.30 -2.4
797,440 + MPMX19_05262 0.30 -1.4
797,440 + MPMX19_05262 0.30 -1.2
797,440 + MPMX19_05262 0.30 +0.4
797,440 + MPMX19_05262 0.30 -1.6
797,440 + MPMX19_05262 0.30 -1.4
797,440 + MPMX19_05262 0.30 +0.0
797,441 - MPMX19_05262 0.30 -0.6
797,441 - MPMX19_05262 0.30 +0.1
797,441 - MPMX19_05262 0.30 -1.6
797,441 - MPMX19_05262 0.30 +0.0
797,638 + MPMX19_05262 0.62 -1.6
797,638 + MPMX19_05262 0.62 +0.3
797,639 - MPMX19_05262 0.62 +0.3
797,639 - MPMX19_05262 0.62 -1.3
797,639 - MPMX19_05262 0.62 -0.1
797,776 + MPMX19_05262 0.83 +0.6
797,776 + MPMX19_05262 0.83 -1.6
797,776 + MPMX19_05262 0.83 +0.9
797,777 - MPMX19_05262 0.84 +0.4
797,777 - MPMX19_05262 0.84 +1.6
797,789 + MPMX19_05262 0.85 -1.3
797,789 + MPMX19_05262 0.85 +0.0
797,789 + MPMX19_05262 0.85 -1.2
797,790 - MPMX19_05262 0.86 -1.3
797,888 + +0.6
797,889 - +1.6
797,903 + -0.3
797,903 + -1.7
797,903 + -0.2
797,904 - +0.0
798,062 + MPMX19_05263 0.12 -0.2
798,063 - MPMX19_05263 0.12 -0.2
798,063 - MPMX19_05263 0.12 +1.0
798,063 - MPMX19_05263 0.12 -0.2
798,080 + MPMX19_05263 0.14 -0.4
798,080 + MPMX19_05263 0.14 +0.4
798,081 - MPMX19_05263 0.14 -1.7
798,081 - MPMX19_05263 0.14 +0.2
798,081 - MPMX19_05263 0.14 +0.0

Or see this region's nucleotide sequence