Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05258 and MPMX19_05259 are separated by 265 nucleotides MPMX19_05259 and MPMX19_05260 are separated by 170 nucleotides
MPMX19_05258: MPMX19_05258 - hypothetical protein, at 789,827 to 791,329
_05258
MPMX19_05259: MPMX19_05259 - hypothetical protein, at 791,595 to 792,749
_05259
MPMX19_05260: MPMX19_05260 - Cobalt-zinc-cadmium resistance protein CzcA, at 792,920 to 796,042
_05260
Position (kb) 791
792
793 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.757 kb on + strand, within MPMX19_05258 at 790.758 kb on - strand, within MPMX19_05258 at 790.758 kb on - strand, within MPMX19_05258 at 790.758 kb on - strand, within MPMX19_05258 at 790.758 kb on - strand, within MPMX19_05258 at 790.758 kb on - strand, within MPMX19_05258 at 790.758 kb on - strand, within MPMX19_05258 at 790.758 kb on - strand, within MPMX19_05258 at 790.758 kb on - strand, within MPMX19_05258 at 790.758 kb on - strand, within MPMX19_05258 at 790.758 kb on - strand, within MPMX19_05258 at 790.758 kb on - strand, within MPMX19_05258 at 791.021 kb on + strand, within MPMX19_05258 at 791.022 kb on - strand, within MPMX19_05258 at 791.072 kb on + strand, within MPMX19_05258 at 791.072 kb on + strand, within MPMX19_05258 at 791.072 kb on + strand, within MPMX19_05258 at 791.072 kb on + strand, within MPMX19_05258 at 791.072 kb on + strand, within MPMX19_05258 at 791.072 kb on + strand, within MPMX19_05258 at 791.073 kb on - strand, within MPMX19_05258 at 791.073 kb on - strand, within MPMX19_05258 at 791.073 kb on - strand, within MPMX19_05258 at 791.073 kb on - strand, within MPMX19_05258 at 791.073 kb on - strand, within MPMX19_05258 at 791.183 kb on + strand at 791.183 kb on + strand at 791.183 kb on + strand at 791.183 kb on + strand at 791.183 kb on + strand at 791.183 kb on + strand at 791.183 kb on + strand at 791.183 kb on + strand at 791.183 kb on + strand at 791.183 kb on + strand at 791.183 kb on + strand at 791.183 kb on + strand at 791.183 kb on + strand at 791.183 kb on + strand at 791.183 kb on + strand at 791.183 kb on + strand at 791.183 kb on + strand at 791.183 kb on + strand at 791.183 kb on + strand at 791.183 kb on + strand at 791.183 kb on + strand at 791.184 kb on - strand at 791.184 kb on - strand at 791.184 kb on - strand at 791.184 kb on - strand at 791.184 kb on - strand at 791.184 kb on - strand at 791.184 kb on - strand at 791.184 kb on - strand at 791.184 kb on - strand at 791.184 kb on - strand at 791.184 kb on - strand at 791.184 kb on - strand at 791.184 kb on - strand at 791.184 kb on - strand at 791.184 kb on - strand at 791.184 kb on - strand at 791.184 kb on - strand at 791.184 kb on - strand at 791.184 kb on - strand at 791.185 kb on + strand at 791.186 kb on - strand at 791.261 kb on + strand at 791.261 kb on + strand at 791.261 kb on + strand at 791.261 kb on + strand at 791.261 kb on + strand at 791.261 kb on + strand at 791.261 kb on + strand at 791.261 kb on + strand at 791.261 kb on + strand at 791.262 kb on - strand at 791.262 kb on - strand at 791.262 kb on - strand at 791.262 kb on - strand at 791.262 kb on - strand at 791.262 kb on - strand at 791.263 kb on + strand at 791.263 kb on + strand at 791.263 kb on + strand at 791.264 kb on - strand at 791.264 kb on - strand at 791.264 kb on - strand at 791.264 kb on - strand at 791.264 kb on - strand at 791.264 kb on - strand at 791.264 kb on - strand at 791.327 kb on + strand at 791.344 kb on + strand at 791.344 kb on + strand at 791.345 kb on - strand at 791.345 kb on - strand at 791.345 kb on - strand at 791.436 kb on + strand at 791.673 kb on + strand at 791.673 kb on + strand at 791.673 kb on + strand at 791.673 kb on + strand at 791.674 kb on - strand at 791.674 kb on - strand at 791.674 kb on - strand at 791.674 kb on - strand at 791.674 kb on - strand at 791.674 kb on - strand at 791.674 kb on - strand at 791.679 kb on + strand at 791.679 kb on + strand at 791.680 kb on - strand at 791.680 kb on - strand at 791.691 kb on + strand at 791.692 kb on - strand at 791.692 kb on - strand at 791.718 kb on + strand, within MPMX19_05259 at 791.718 kb on + strand, within MPMX19_05259 at 791.718 kb on + strand, within MPMX19_05259 at 791.718 kb on + strand, within MPMX19_05259 at 791.718 kb on + strand, within MPMX19_05259 at 791.718 kb on + strand, within MPMX19_05259 at 791.718 kb on + strand, within MPMX19_05259 at 791.719 kb on - strand, within MPMX19_05259 at 791.719 kb on - strand, within MPMX19_05259 at 791.719 kb on - strand, within MPMX19_05259 at 791.719 kb on - strand, within MPMX19_05259 at 791.719 kb on - strand, within MPMX19_05259 at 791.719 kb on - strand, within MPMX19_05259 at 791.719 kb on - strand, within MPMX19_05259 at 791.719 kb on - strand, within MPMX19_05259 at 791.719 kb on - strand, within MPMX19_05259 at 791.719 kb on - strand, within MPMX19_05259 at 791.719 kb on - strand, within MPMX19_05259 at 791.719 kb on - strand, within MPMX19_05259 at 791.742 kb on + strand, within MPMX19_05259 at 791.742 kb on + strand, within MPMX19_05259 at 791.743 kb on - strand, within MPMX19_05259 at 791.743 kb on - strand, within MPMX19_05259 at 791.796 kb on + strand, within MPMX19_05259 at 791.796 kb on + strand, within MPMX19_05259 at 791.796 kb on + strand, within MPMX19_05259 at 791.796 kb on + strand, within MPMX19_05259 at 791.796 kb on + strand, within MPMX19_05259 at 791.797 kb on - strand, within MPMX19_05259 at 791.832 kb on + strand, within MPMX19_05259 at 791.832 kb on + strand, within MPMX19_05259 at 791.832 kb on + strand, within MPMX19_05259 at 791.832 kb on + strand, within MPMX19_05259 at 791.832 kb on + strand, within MPMX19_05259 at 791.832 kb on + strand, within MPMX19_05259 at 791.832 kb on + strand, within MPMX19_05259 at 791.832 kb on + strand, within MPMX19_05259 at 791.832 kb on + strand, within MPMX19_05259 at 791.833 kb on - strand, within MPMX19_05259 at 791.833 kb on - strand, within MPMX19_05259 at 791.833 kb on - strand, within MPMX19_05259 at 791.833 kb on - strand, within MPMX19_05259 at 791.868 kb on + strand, within MPMX19_05259 at 791.934 kb on + strand, within MPMX19_05259 at 791.934 kb on + strand, within MPMX19_05259 at 791.934 kb on + strand, within MPMX19_05259 at 791.935 kb on - strand, within MPMX19_05259 at 791.935 kb on - strand, within MPMX19_05259 at 791.935 kb on - strand, within MPMX19_05259 at 791.935 kb on - strand, within MPMX19_05259 at 792.027 kb on + strand, within MPMX19_05259 at 792.027 kb on + strand, within MPMX19_05259 at 792.027 kb on + strand, within MPMX19_05259 at 792.027 kb on + strand, within MPMX19_05259 at 792.027 kb on + strand, within MPMX19_05259 at 792.028 kb on - strand, within MPMX19_05259 at 792.028 kb on - strand, within MPMX19_05259 at 792.028 kb on - strand, within MPMX19_05259 at 792.028 kb on - strand, within MPMX19_05259 at 792.052 kb on - strand, within MPMX19_05259 at 792.087 kb on + strand, within MPMX19_05259 at 792.087 kb on + strand, within MPMX19_05259 at 792.087 kb on + strand, within MPMX19_05259 at 792.088 kb on - strand, within MPMX19_05259 at 792.088 kb on - strand, within MPMX19_05259 at 792.088 kb on - strand, within MPMX19_05259 at 792.088 kb on - strand, within MPMX19_05259 at 792.276 kb on + strand, within MPMX19_05259 at 792.276 kb on + strand, within MPMX19_05259 at 792.276 kb on + strand, within MPMX19_05259 at 792.276 kb on + strand, within MPMX19_05259 at 792.276 kb on + strand, within MPMX19_05259 at 792.277 kb on - strand, within MPMX19_05259 at 792.277 kb on - strand, within MPMX19_05259 at 792.277 kb on - strand, within MPMX19_05259 at 792.277 kb on - strand, within MPMX19_05259 at 792.495 kb on + strand, within MPMX19_05259 at 792.495 kb on + strand, within MPMX19_05259 at 792.495 kb on + strand, within MPMX19_05259 at 792.496 kb on - strand, within MPMX19_05259 at 792.496 kb on - strand, within MPMX19_05259 at 792.496 kb on - strand, within MPMX19_05259 at 792.496 kb on - strand, within MPMX19_05259 at 792.504 kb on + strand, within MPMX19_05259 at 792.504 kb on + strand, within MPMX19_05259 at 792.504 kb on + strand, within MPMX19_05259 at 792.528 kb on + strand, within MPMX19_05259 at 792.528 kb on + strand, within MPMX19_05259 at 792.528 kb on + strand, within MPMX19_05259 at 792.529 kb on - strand, within MPMX19_05259 at 792.529 kb on - strand, within MPMX19_05259 at 792.529 kb on - strand, within MPMX19_05259 at 792.655 kb on - strand at 792.743 kb on - strand at 792.743 kb on - strand at 792.802 kb on - strand at 792.802 kb on - strand at 792.913 kb on + strand at 792.913 kb on + strand at 793.014 kb on + strand at 793.014 kb on + strand at 793.509 kb on + strand, within MPMX19_05260 at 793.509 kb on + strand, within MPMX19_05260 at 793.509 kb on + strand, within MPMX19_05260 at 793.510 kb on - strand, within MPMX19_05260 at 793.510 kb on - strand, within MPMX19_05260 at 793.660 kb on - strand, within MPMX19_05260
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 790,757 + MPMX19_05258 0.62 +0.4 790,757 + MPMX19_05258 0.62 -1.3 790,757 + MPMX19_05258 0.62 -2.1 790,757 + MPMX19_05258 0.62 -1.0 790,757 + MPMX19_05258 0.62 +0.0 790,757 + MPMX19_05258 0.62 +0.3 790,757 + MPMX19_05258 0.62 -0.9 790,757 + MPMX19_05258 0.62 -0.2 790,757 + MPMX19_05258 0.62 +0.8 790,757 + MPMX19_05258 0.62 -0.6 790,757 + MPMX19_05258 0.62 +0.3 790,757 + MPMX19_05258 0.62 +0.6 790,757 + MPMX19_05258 0.62 -0.5 790,757 + MPMX19_05258 0.62 -0.0 790,757 + MPMX19_05258 0.62 -0.9 790,757 + MPMX19_05258 0.62 -0.6 790,757 + MPMX19_05258 0.62 +0.0 790,757 + MPMX19_05258 0.62 -1.3 790,757 + MPMX19_05258 0.62 +1.0 790,757 + MPMX19_05258 0.62 +0.3 790,757 + MPMX19_05258 0.62 -0.3 790,757 + MPMX19_05258 0.62 +0.7 790,757 + MPMX19_05258 0.62 -0.3 790,757 + MPMX19_05258 0.62 -0.9 790,758 - MPMX19_05258 0.62 -1.7 790,758 - MPMX19_05258 0.62 -0.7 790,758 - MPMX19_05258 0.62 +0.1 790,758 - MPMX19_05258 0.62 -0.5 790,758 - MPMX19_05258 0.62 +1.1 790,758 - MPMX19_05258 0.62 -0.6 790,758 - MPMX19_05258 0.62 +0.3 790,758 - MPMX19_05258 0.62 +0.7 790,758 - MPMX19_05258 0.62 -0.9 790,758 - MPMX19_05258 0.62 +0.5 790,758 - MPMX19_05258 0.62 -1.2 791,021 + MPMX19_05258 0.79 +1.4 791,022 - MPMX19_05258 0.80 -0.9 791,072 + MPMX19_05258 0.83 -1.2 791,072 + MPMX19_05258 0.83 -0.3 791,072 + MPMX19_05258 0.83 +0.7 791,072 + MPMX19_05258 0.83 -0.2 791,072 + MPMX19_05258 0.83 +0.4 791,072 + MPMX19_05258 0.83 +0.4 791,073 - MPMX19_05258 0.83 +0.8 791,073 - MPMX19_05258 0.83 +0.7 791,073 - MPMX19_05258 0.83 -0.8 791,073 - MPMX19_05258 0.83 +0.0 791,073 - MPMX19_05258 0.83 -1.2 791,183 + -0.5 791,183 + -2.3 791,183 + -2.5 791,183 + -1.2 791,183 + +0.3 791,183 + -0.8 791,183 + -0.3 791,183 + -0.3 791,183 + +1.4 791,183 + -0.6 791,183 + +1.2 791,183 + -1.6 791,183 + -1.0 791,183 + -0.9 791,183 + -1.2 791,183 + -0.5 791,183 + -0.7 791,183 + +0.6 791,183 + -0.6 791,183 + -1.4 791,183 + +0.3 791,184 - -0.8 791,184 - -0.6 791,184 - +0.7 791,184 - +0.1 791,184 - -0.1 791,184 - -0.2 791,184 - -0.2 791,184 - -1.3 791,184 - -2.1 791,184 - -0.2 791,184 - +1.0 791,184 - -0.3 791,184 - +1.4 791,184 - -1.7 791,184 - +0.6 791,184 - -0.6 791,184 - -1.0 791,184 - +0.4 791,184 - -0.6 791,185 + +0.8 791,186 - -0.6 791,261 + +0.1 791,261 + +0.1 791,261 + -1.4 791,261 + +0.4 791,261 + -1.0 791,261 + +0.1 791,261 + -0.1 791,261 + +0.3 791,261 + -2.0 791,262 - +0.1 791,262 - +2.0 791,262 - -1.0 791,262 - -0.9 791,262 - +0.2 791,262 - -0.6 791,263 + -1.0 791,263 + -0.4 791,263 + -2.3 791,264 - -1.6 791,264 - -1.0 791,264 - -1.0 791,264 - -1.4 791,264 - +2.0 791,264 - -2.3 791,264 - -0.8 791,327 + +0.2 791,344 + -1.4 791,344 + -2.4 791,345 - -2.0 791,345 - +0.3 791,345 - +0.3 791,436 + -0.6 791,673 + -2.0 791,673 + +0.5 791,673 + -0.4 791,673 + -0.1 791,674 - -1.8 791,674 - -0.1 791,674 - +1.3 791,674 - -1.4 791,674 - -0.2 791,674 - -0.6 791,674 - -0.3 791,679 + -0.2 791,679 + +0.1 791,680 - +0.1 791,680 - +1.0 791,691 + +0.2 791,692 - -1.4 791,692 - -0.3 791,718 + MPMX19_05259 0.11 -1.2 791,718 + MPMX19_05259 0.11 -0.2 791,718 + MPMX19_05259 0.11 +0.6 791,718 + MPMX19_05259 0.11 -1.9 791,718 + MPMX19_05259 0.11 +0.4 791,718 + MPMX19_05259 0.11 -1.4 791,718 + MPMX19_05259 0.11 -0.8 791,719 - MPMX19_05259 0.11 -0.3 791,719 - MPMX19_05259 0.11 +0.8 791,719 - MPMX19_05259 0.11 +0.2 791,719 - MPMX19_05259 0.11 +0.4 791,719 - MPMX19_05259 0.11 -0.8 791,719 - MPMX19_05259 0.11 +1.2 791,719 - MPMX19_05259 0.11 +0.7 791,719 - MPMX19_05259 0.11 +1.4 791,719 - MPMX19_05259 0.11 +1.8 791,719 - MPMX19_05259 0.11 -0.6 791,719 - MPMX19_05259 0.11 -2.2 791,719 - MPMX19_05259 0.11 -2.7 791,742 + MPMX19_05259 0.13 -2.2 791,742 + MPMX19_05259 0.13 -0.4 791,743 - MPMX19_05259 0.13 -0.1 791,743 - MPMX19_05259 0.13 +0.7 791,796 + MPMX19_05259 0.17 -0.5 791,796 + MPMX19_05259 0.17 -0.6 791,796 + MPMX19_05259 0.17 -1.8 791,796 + MPMX19_05259 0.17 -1.2 791,796 + MPMX19_05259 0.17 -1.0 791,797 - MPMX19_05259 0.17 -0.3 791,832 + MPMX19_05259 0.21 +0.0 791,832 + MPMX19_05259 0.21 -0.6 791,832 + MPMX19_05259 0.21 -1.3 791,832 + MPMX19_05259 0.21 -0.6 791,832 + MPMX19_05259 0.21 +0.4 791,832 + MPMX19_05259 0.21 +0.2 791,832 + MPMX19_05259 0.21 -1.0 791,832 + MPMX19_05259 0.21 -0.6 791,832 + MPMX19_05259 0.21 -2.0 791,833 - MPMX19_05259 0.21 -0.7 791,833 - MPMX19_05259 0.21 -0.7 791,833 - MPMX19_05259 0.21 -0.4 791,833 - MPMX19_05259 0.21 +0.4 791,868 + MPMX19_05259 0.24 -1.0 791,934 + MPMX19_05259 0.29 -0.1 791,934 + MPMX19_05259 0.29 -0.3 791,934 + MPMX19_05259 0.29 +0.8 791,935 - MPMX19_05259 0.29 +0.0 791,935 - MPMX19_05259 0.29 +0.3 791,935 - MPMX19_05259 0.29 -1.1 791,935 - MPMX19_05259 0.29 +0.4 792,027 + MPMX19_05259 0.37 -0.8 792,027 + MPMX19_05259 0.37 -0.7 792,027 + MPMX19_05259 0.37 -0.1 792,027 + MPMX19_05259 0.37 -0.6 792,027 + MPMX19_05259 0.37 +1.8 792,028 - MPMX19_05259 0.37 -1.0 792,028 - MPMX19_05259 0.37 +0.2 792,028 - MPMX19_05259 0.37 +0.6 792,028 - MPMX19_05259 0.37 -2.2 792,052 - MPMX19_05259 0.40 +0.0 792,087 + MPMX19_05259 0.43 +0.7 792,087 + MPMX19_05259 0.43 -0.6 792,087 + MPMX19_05259 0.43 -0.9 792,088 - MPMX19_05259 0.43 -1.3 792,088 - MPMX19_05259 0.43 -1.4 792,088 - MPMX19_05259 0.43 -0.7 792,088 - MPMX19_05259 0.43 -1.9 792,276 + MPMX19_05259 0.59 +0.3 792,276 + MPMX19_05259 0.59 +0.1 792,276 + MPMX19_05259 0.59 -0.7 792,276 + MPMX19_05259 0.59 -0.1 792,276 + MPMX19_05259 0.59 -0.2 792,277 - MPMX19_05259 0.59 -0.4 792,277 - MPMX19_05259 0.59 -0.9 792,277 - MPMX19_05259 0.59 -1.4 792,277 - MPMX19_05259 0.59 -2.1 792,495 + MPMX19_05259 0.78 -1.9 792,495 + MPMX19_05259 0.78 -1.6 792,495 + MPMX19_05259 0.78 -0.2 792,496 - MPMX19_05259 0.78 -1.3 792,496 - MPMX19_05259 0.78 -0.6 792,496 - MPMX19_05259 0.78 -2.0 792,496 - MPMX19_05259 0.78 +0.3 792,504 + MPMX19_05259 0.79 -0.9 792,504 + MPMX19_05259 0.79 -1.3 792,504 + MPMX19_05259 0.79 -2.2 792,528 + MPMX19_05259 0.81 +0.5 792,528 + MPMX19_05259 0.81 -0.3 792,528 + MPMX19_05259 0.81 +0.4 792,529 - MPMX19_05259 0.81 -1.7 792,529 - MPMX19_05259 0.81 -3.4 792,529 - MPMX19_05259 0.81 -0.4 792,655 - -0.3 792,743 - -1.6 792,743 - +0.0 792,802 - +0.4 792,802 - -0.5 792,913 + -1.0 792,913 + -0.8 793,014 + +0.3 793,014 + -1.2 793,509 + MPMX19_05260 0.19 -2.0 793,509 + MPMX19_05260 0.19 -0.7 793,509 + MPMX19_05260 0.19 +1.8 793,510 - MPMX19_05260 0.19 -0.8 793,510 - MPMX19_05260 0.19 -0.4 793,660 - MPMX19_05260 0.24 +0.4
Or see this region's nucleotide sequence