Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05233

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05232 and MPMX19_05233 are separated by 245 nucleotidesMPMX19_05233 and MPMX19_05234 overlap by 8 nucleotidesMPMX19_05234 and MPMX19_05235 are separated by 2 nucleotides MPMX19_05232: MPMX19_05232 - Beta-ketothiolase BktB, at 758,122 to 759,303 _05232 MPMX19_05233: MPMX19_05233 - Glycine betaine/proline betaine transport system ATP-binding protein ProV, at 759,549 to 760,730 _05233 MPMX19_05234: MPMX19_05234 - Glycine betaine/choline transport system permease protein OusW, at 760,723 to 761,649 _05234 MPMX19_05235: MPMX19_05235 - HTH-type transcriptional regulator BetI, at 761,652 to 762,227 _05235 Position (kb) 759 760 761Strain fitness (log2 ratio) -2 -1 0 1at 758.551 kb on + strand, within MPMX19_05232at 758.551 kb on + strand, within MPMX19_05232at 758.551 kb on + strand, within MPMX19_05232at 758.552 kb on - strand, within MPMX19_05232at 758.552 kb on - strand, within MPMX19_05232at 758.552 kb on - strand, within MPMX19_05232at 758.552 kb on - strand, within MPMX19_05232at 758.552 kb on - strand, within MPMX19_05232at 758.552 kb on - strand, within MPMX19_05232at 758.552 kb on - strand, within MPMX19_05232at 758.552 kb on - strand, within MPMX19_05232at 758.552 kb on - strand, within MPMX19_05232at 758.627 kb on - strand, within MPMX19_05232at 758.957 kb on - strand, within MPMX19_05232at 758.983 kb on + strand, within MPMX19_05232at 758.983 kb on + strand, within MPMX19_05232at 758.983 kb on + strand, within MPMX19_05232at 758.983 kb on + strand, within MPMX19_05232at 758.983 kb on + strand, within MPMX19_05232at 758.983 kb on + strand, within MPMX19_05232at 758.983 kb on + strand, within MPMX19_05232at 758.983 kb on + strand, within MPMX19_05232at 758.983 kb on + strand, within MPMX19_05232at 758.984 kb on - strand, within MPMX19_05232at 758.984 kb on - strand, within MPMX19_05232at 758.984 kb on - strand, within MPMX19_05232at 758.984 kb on - strand, within MPMX19_05232at 758.984 kb on - strand, within MPMX19_05232at 758.984 kb on - strand, within MPMX19_05232at 758.984 kb on - strand, within MPMX19_05232at 758.984 kb on - strand, within MPMX19_05232at 758.984 kb on - strand, within MPMX19_05232at 758.984 kb on - strand, within MPMX19_05232at 759.238 kb on + strandat 759.238 kb on + strandat 759.309 kb on + strandat 759.309 kb on + strandat 759.310 kb on - strandat 759.310 kb on - strandat 759.310 kb on - strandat 759.310 kb on - strandat 759.310 kb on - strandat 759.331 kb on + strandat 759.331 kb on + strandat 759.331 kb on + strandat 759.331 kb on + strandat 759.331 kb on + strandat 759.331 kb on + strandat 759.331 kb on + strandat 759.332 kb on - strandat 759.353 kb on + strandat 759.468 kb on - strandat 759.468 kb on - strandat 759.498 kb on + strandat 759.498 kb on + strandat 759.498 kb on + strandat 759.498 kb on + strandat 759.781 kb on + strand, within MPMX19_05233at 759.885 kb on + strand, within MPMX19_05233at 759.885 kb on + strand, within MPMX19_05233at 760.065 kb on + strand, within MPMX19_05233at 760.065 kb on + strand, within MPMX19_05233at 760.065 kb on + strand, within MPMX19_05233at 760.065 kb on + strand, within MPMX19_05233at 760.065 kb on + strand, within MPMX19_05233at 760.065 kb on + strand, within MPMX19_05233at 760.065 kb on + strand, within MPMX19_05233at 760.066 kb on - strand, within MPMX19_05233at 760.066 kb on - strand, within MPMX19_05233at 760.374 kb on + strand, within MPMX19_05233at 760.374 kb on + strand, within MPMX19_05233at 760.374 kb on + strand, within MPMX19_05233at 760.374 kb on + strand, within MPMX19_05233at 760.374 kb on + strand, within MPMX19_05233at 760.374 kb on + strand, within MPMX19_05233at 760.374 kb on + strand, within MPMX19_05233at 760.374 kb on + strand, within MPMX19_05233at 760.374 kb on + strand, within MPMX19_05233at 760.375 kb on - strand, within MPMX19_05233at 760.375 kb on - strand, within MPMX19_05233at 760.375 kb on - strand, within MPMX19_05233at 760.375 kb on - strand, within MPMX19_05233at 760.375 kb on - strand, within MPMX19_05233at 760.375 kb on - strand, within MPMX19_05233at 760.482 kb on + strand, within MPMX19_05233at 761.173 kb on + strand, within MPMX19_05234at 761.173 kb on + strand, within MPMX19_05234at 761.174 kb on - strand, within MPMX19_05234at 761.534 kb on + strand, within MPMX19_05234at 761.534 kb on + strand, within MPMX19_05234at 761.534 kb on + strand, within MPMX19_05234at 761.534 kb on + strand, within MPMX19_05234at 761.534 kb on + strand, within MPMX19_05234at 761.535 kb on - strand, within MPMX19_05234at 761.535 kb on - strand, within MPMX19_05234at 761.535 kb on - strand, within MPMX19_05234at 761.535 kb on - strand, within MPMX19_05234at 761.677 kb on + strandat 761.677 kb on + strandat 761.677 kb on + strandat 761.677 kb on + strandat 761.677 kb on + strandat 761.678 kb on - strandat 761.678 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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758,551 + MPMX19_05232 0.36 -0.6
758,551 + MPMX19_05232 0.36 +0.5
758,551 + MPMX19_05232 0.36 +0.9
758,552 - MPMX19_05232 0.36 -0.4
758,552 - MPMX19_05232 0.36 +0.1
758,552 - MPMX19_05232 0.36 -2.4
758,552 - MPMX19_05232 0.36 +0.4
758,552 - MPMX19_05232 0.36 -0.4
758,552 - MPMX19_05232 0.36 -0.8
758,552 - MPMX19_05232 0.36 +0.7
758,552 - MPMX19_05232 0.36 -0.3
758,552 - MPMX19_05232 0.36 -0.8
758,627 - MPMX19_05232 0.43 -1.9
758,957 - MPMX19_05232 0.71 -0.3
758,983 + MPMX19_05232 0.73 -1.0
758,983 + MPMX19_05232 0.73 +0.2
758,983 + MPMX19_05232 0.73 -0.7
758,983 + MPMX19_05232 0.73 -1.4
758,983 + MPMX19_05232 0.73 -1.7
758,983 + MPMX19_05232 0.73 -0.5
758,983 + MPMX19_05232 0.73 -0.6
758,983 + MPMX19_05232 0.73 +0.1
758,983 + MPMX19_05232 0.73 -0.6
758,984 - MPMX19_05232 0.73 -1.2
758,984 - MPMX19_05232 0.73 -0.2
758,984 - MPMX19_05232 0.73 +0.4
758,984 - MPMX19_05232 0.73 -1.8
758,984 - MPMX19_05232 0.73 -2.2
758,984 - MPMX19_05232 0.73 -0.8
758,984 - MPMX19_05232 0.73 +1.0
758,984 - MPMX19_05232 0.73 +0.0
758,984 - MPMX19_05232 0.73 +0.0
758,984 - MPMX19_05232 0.73 +0.8
759,238 + -1.2
759,238 + +0.6
759,309 + -0.6
759,309 + -0.4
759,310 - -1.9
759,310 - -0.1
759,310 - -0.2
759,310 - +0.0
759,310 - -1.1
759,331 + +0.3
759,331 + +0.0
759,331 + +0.0
759,331 + -0.3
759,331 + +0.8
759,331 + -0.9
759,331 + -1.0
759,332 - -0.7
759,353 + -0.4
759,468 - +0.4
759,468 - -1.3
759,498 + -0.8
759,498 + +0.4
759,498 + -0.8
759,498 + -2.2
759,781 + MPMX19_05233 0.20 -0.4
759,885 + MPMX19_05233 0.28 -0.8
759,885 + MPMX19_05233 0.28 -0.4
760,065 + MPMX19_05233 0.44 -1.0
760,065 + MPMX19_05233 0.44 +0.0
760,065 + MPMX19_05233 0.44 +1.0
760,065 + MPMX19_05233 0.44 -0.4
760,065 + MPMX19_05233 0.44 -2.5
760,065 + MPMX19_05233 0.44 +0.7
760,065 + MPMX19_05233 0.44 +0.3
760,066 - MPMX19_05233 0.44 -0.6
760,066 - MPMX19_05233 0.44 +0.7
760,374 + MPMX19_05233 0.70 -0.3
760,374 + MPMX19_05233 0.70 +0.1
760,374 + MPMX19_05233 0.70 +0.0
760,374 + MPMX19_05233 0.70 -0.4
760,374 + MPMX19_05233 0.70 +0.2
760,374 + MPMX19_05233 0.70 +0.9
760,374 + MPMX19_05233 0.70 -0.5
760,374 + MPMX19_05233 0.70 +0.5
760,374 + MPMX19_05233 0.70 +0.0
760,375 - MPMX19_05233 0.70 +0.6
760,375 - MPMX19_05233 0.70 -1.3
760,375 - MPMX19_05233 0.70 -0.7
760,375 - MPMX19_05233 0.70 -0.3
760,375 - MPMX19_05233 0.70 -0.8
760,375 - MPMX19_05233 0.70 -0.8
760,482 + MPMX19_05233 0.79 -0.2
761,173 + MPMX19_05234 0.49 -0.5
761,173 + MPMX19_05234 0.49 -1.2
761,174 - MPMX19_05234 0.49 +0.4
761,534 + MPMX19_05234 0.87 +1.1
761,534 + MPMX19_05234 0.87 -2.2
761,534 + MPMX19_05234 0.87 -1.0
761,534 + MPMX19_05234 0.87 -0.6
761,534 + MPMX19_05234 0.87 -0.7
761,535 - MPMX19_05234 0.88 -1.4
761,535 - MPMX19_05234 0.88 -0.5
761,535 - MPMX19_05234 0.88 -1.4
761,535 - MPMX19_05234 0.88 -0.8
761,677 + -0.3
761,677 + +0.8
761,677 + -1.4
761,677 + +0.7
761,677 + -1.6
761,678 - +0.0
761,678 - -0.3

Or see this region's nucleotide sequence