Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05230

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05228 and MPMX19_05229 overlap by 4 nucleotidesMPMX19_05229 and MPMX19_05230 are separated by 103 nucleotidesMPMX19_05230 and MPMX19_05231 are separated by 272 nucleotides MPMX19_05228: MPMX19_05228 - Anti-sigma-E factor ChrR, at 754,353 to 755,039 _05228 MPMX19_05229: MPMX19_05229 - ECF RNA polymerase sigma factor RpoE, at 755,036 to 755,659 _05229 MPMX19_05230: MPMX19_05230 - putative MFS-type transporter YcaD, at 755,763 to 757,001 _05230 MPMX19_05231: MPMX19_05231 - 1,2-epoxyphenylacetyl-CoA isomerase, at 757,274 to 758,089 _05231 Position (kb) 755 756 757 758Strain fitness (log2 ratio) -2 -1 0 1 2at 754.903 kb on + strand, within MPMX19_05228at 754.903 kb on + strand, within MPMX19_05228at 754.903 kb on + strand, within MPMX19_05228at 754.903 kb on + strand, within MPMX19_05228at 754.903 kb on + strand, within MPMX19_05228at 754.903 kb on + strand, within MPMX19_05228at 754.904 kb on - strand, within MPMX19_05228at 754.904 kb on - strand, within MPMX19_05228at 754.904 kb on - strand, within MPMX19_05228at 754.904 kb on - strand, within MPMX19_05228at 754.904 kb on - strand, within MPMX19_05228at 754.936 kb on + strand, within MPMX19_05228at 754.936 kb on + strand, within MPMX19_05228at 754.936 kb on + strand, within MPMX19_05228at 754.937 kb on - strand, within MPMX19_05228at 755.095 kb on + strandat 755.157 kb on + strand, within MPMX19_05229at 755.158 kb on - strand, within MPMX19_05229at 755.158 kb on - strand, within MPMX19_05229at 755.158 kb on - strand, within MPMX19_05229at 755.478 kb on + strand, within MPMX19_05229at 755.478 kb on + strand, within MPMX19_05229at 755.478 kb on + strand, within MPMX19_05229at 755.478 kb on + strand, within MPMX19_05229at 755.478 kb on + strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.696 kb on - strandat 755.710 kb on - strandat 755.738 kb on + strandat 755.738 kb on + strandat 755.738 kb on + strandat 755.738 kb on + strandat 755.738 kb on + strandat 755.738 kb on + strandat 755.738 kb on + strandat 755.739 kb on - strandat 755.739 kb on - strandat 755.739 kb on - strandat 755.739 kb on - strandat 755.739 kb on - strandat 755.764 kb on + strandat 755.765 kb on - strandat 755.765 kb on - strandat 755.890 kb on + strand, within MPMX19_05230at 755.890 kb on + strand, within MPMX19_05230at 755.890 kb on + strand, within MPMX19_05230at 755.890 kb on + strand, within MPMX19_05230at 755.890 kb on + strand, within MPMX19_05230at 755.891 kb on - strand, within MPMX19_05230at 755.891 kb on - strand, within MPMX19_05230at 755.891 kb on - strand, within MPMX19_05230at 755.891 kb on - strand, within MPMX19_05230at 755.891 kb on - strand, within MPMX19_05230at 756.052 kb on + strand, within MPMX19_05230at 756.052 kb on + strand, within MPMX19_05230at 756.052 kb on + strand, within MPMX19_05230at 756.052 kb on + strand, within MPMX19_05230at 756.052 kb on + strand, within MPMX19_05230at 756.053 kb on - strand, within MPMX19_05230at 756.053 kb on - strand, within MPMX19_05230at 756.053 kb on - strand, within MPMX19_05230at 756.053 kb on - strand, within MPMX19_05230at 756.053 kb on - strand, within MPMX19_05230at 756.349 kb on + strand, within MPMX19_05230at 756.349 kb on + strand, within MPMX19_05230at 756.349 kb on + strand, within MPMX19_05230at 756.350 kb on - strand, within MPMX19_05230at 756.350 kb on - strand, within MPMX19_05230at 756.350 kb on - strand, within MPMX19_05230at 756.583 kb on + strand, within MPMX19_05230at 756.583 kb on + strand, within MPMX19_05230at 756.584 kb on - strand, within MPMX19_05230at 756.584 kb on - strand, within MPMX19_05230at 756.584 kb on - strand, within MPMX19_05230at 756.598 kb on + strand, within MPMX19_05230at 756.598 kb on + strand, within MPMX19_05230at 756.598 kb on + strand, within MPMX19_05230at 756.598 kb on + strand, within MPMX19_05230at 756.598 kb on + strand, within MPMX19_05230at 756.598 kb on + strand, within MPMX19_05230at 756.598 kb on + strand, within MPMX19_05230at 756.598 kb on + strand, within MPMX19_05230at 756.599 kb on - strand, within MPMX19_05230at 756.599 kb on - strand, within MPMX19_05230at 756.599 kb on - strand, within MPMX19_05230at 756.599 kb on - strand, within MPMX19_05230at 756.599 kb on - strand, within MPMX19_05230at 756.599 kb on - strand, within MPMX19_05230at 756.599 kb on - strand, within MPMX19_05230at 756.599 kb on - strand, within MPMX19_05230at 756.599 kb on - strand, within MPMX19_05230at 756.599 kb on - strand, within MPMX19_05230at 756.667 kb on + strand, within MPMX19_05230at 756.667 kb on + strand, within MPMX19_05230at 756.667 kb on + strand, within MPMX19_05230at 756.667 kb on + strand, within MPMX19_05230at 756.667 kb on + strand, within MPMX19_05230at 756.667 kb on + strand, within MPMX19_05230at 756.667 kb on + strand, within MPMX19_05230at 756.667 kb on + strand, within MPMX19_05230at 756.667 kb on + strand, within MPMX19_05230at 756.667 kb on - strand, within MPMX19_05230at 756.668 kb on - strand, within MPMX19_05230at 756.668 kb on - strand, within MPMX19_05230at 756.668 kb on - strand, within MPMX19_05230at 756.668 kb on - strand, within MPMX19_05230at 756.668 kb on - strand, within MPMX19_05230at 756.668 kb on - strand, within MPMX19_05230at 756.668 kb on - strand, within MPMX19_05230at 756.668 kb on - strand, within MPMX19_05230at 756.668 kb on - strand, within MPMX19_05230at 756.791 kb on + strand, within MPMX19_05230at 756.792 kb on - strand, within MPMX19_05230at 756.823 kb on + strand, within MPMX19_05230at 756.823 kb on + strand, within MPMX19_05230at 756.823 kb on + strand, within MPMX19_05230at 756.823 kb on + strand, within MPMX19_05230at 756.823 kb on + strand, within MPMX19_05230at 756.824 kb on - strand, within MPMX19_05230at 756.850 kb on + strand, within MPMX19_05230at 756.850 kb on + strand, within MPMX19_05230at 756.851 kb on - strand, within MPMX19_05230at 756.851 kb on - strand, within MPMX19_05230at 756.851 kb on - strand, within MPMX19_05230at 756.851 kb on - strand, within MPMX19_05230at 756.851 kb on - strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.853 kb on + strand, within MPMX19_05230at 756.854 kb on - strand, within MPMX19_05230at 756.854 kb on - strand, within MPMX19_05230at 756.854 kb on - strand, within MPMX19_05230at 756.854 kb on - strand, within MPMX19_05230at 756.854 kb on - strand, within MPMX19_05230at 756.854 kb on - strand, within MPMX19_05230at 756.854 kb on - strand, within MPMX19_05230at 756.854 kb on - strand, within MPMX19_05230at 757.184 kb on - strandat 757.238 kb on + strandat 757.238 kb on + strandat 757.238 kb on + strandat 757.238 kb on + strandat 757.238 kb on + strandat 757.238 kb on + strandat 757.238 kb on + strandat 757.238 kb on + strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.239 kb on - strandat 757.253 kb on - strandat 757.582 kb on - strand, within MPMX19_05231at 757.706 kb on + strand, within MPMX19_05231at 757.706 kb on + strand, within MPMX19_05231at 757.706 kb on + strand, within MPMX19_05231at 757.706 kb on + strand, within MPMX19_05231at 757.706 kb on + strand, within MPMX19_05231at 757.706 kb on + strand, within MPMX19_05231at 757.706 kb on + strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.707 kb on - strand, within MPMX19_05231at 757.925 kb on + strand, within MPMX19_05231at 757.926 kb on - strand, within MPMX19_05231

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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754,903 + MPMX19_05228 0.80 -0.3
754,903 + MPMX19_05228 0.80 +0.4
754,903 + MPMX19_05228 0.80 +0.0
754,903 + MPMX19_05228 0.80 +0.4
754,903 + MPMX19_05228 0.80 +0.3
754,903 + MPMX19_05228 0.80 -1.4
754,904 - MPMX19_05228 0.80 -0.6
754,904 - MPMX19_05228 0.80 -0.6
754,904 - MPMX19_05228 0.80 -1.1
754,904 - MPMX19_05228 0.80 +0.0
754,904 - MPMX19_05228 0.80 -1.0
754,936 + MPMX19_05228 0.85 -0.7
754,936 + MPMX19_05228 0.85 -0.6
754,936 + MPMX19_05228 0.85 -0.6
754,937 - MPMX19_05228 0.85 -0.8
755,095 + -1.7
755,157 + MPMX19_05229 0.19 -1.5
755,158 - MPMX19_05229 0.20 +1.7
755,158 - MPMX19_05229 0.20 -0.9
755,158 - MPMX19_05229 0.20 -0.9
755,478 + MPMX19_05229 0.71 -0.6
755,478 + MPMX19_05229 0.71 -0.7
755,478 + MPMX19_05229 0.71 +0.6
755,478 + MPMX19_05229 0.71 -0.9
755,478 + MPMX19_05229 0.71 -1.4
755,479 - MPMX19_05229 0.71 -1.9
755,479 - MPMX19_05229 0.71 -1.2
755,479 - MPMX19_05229 0.71 +0.0
755,479 - MPMX19_05229 0.71 -0.2
755,479 - MPMX19_05229 0.71 -0.4
755,479 - MPMX19_05229 0.71 +0.7
755,479 - MPMX19_05229 0.71 -0.2
755,479 - MPMX19_05229 0.71 +0.1
755,479 - MPMX19_05229 0.71 -0.7
755,479 - MPMX19_05229 0.71 -0.6
755,479 - MPMX19_05229 0.71 -0.7
755,696 - +0.1
755,710 - -1.3
755,738 + -0.2
755,738 + -0.6
755,738 + -1.2
755,738 + -1.3
755,738 + -0.9
755,738 + -2.3
755,738 + -0.6
755,739 - -0.2
755,739 - -1.1
755,739 - +0.0
755,739 - -0.2
755,739 - -1.2
755,764 + +1.0
755,765 - -0.7
755,765 - +1.0
755,890 + MPMX19_05230 0.10 -1.0
755,890 + MPMX19_05230 0.10 -0.9
755,890 + MPMX19_05230 0.10 -2.4
755,890 + MPMX19_05230 0.10 +0.4
755,890 + MPMX19_05230 0.10 -1.0
755,891 - MPMX19_05230 0.10 +0.3
755,891 - MPMX19_05230 0.10 +0.0
755,891 - MPMX19_05230 0.10 -1.4
755,891 - MPMX19_05230 0.10 -0.5
755,891 - MPMX19_05230 0.10 -0.8
756,052 + MPMX19_05230 0.23 +1.4
756,052 + MPMX19_05230 0.23 +0.6
756,052 + MPMX19_05230 0.23 -0.7
756,052 + MPMX19_05230 0.23 +0.8
756,052 + MPMX19_05230 0.23 -0.8
756,053 - MPMX19_05230 0.23 -1.8
756,053 - MPMX19_05230 0.23 +0.0
756,053 - MPMX19_05230 0.23 +0.3
756,053 - MPMX19_05230 0.23 -0.3
756,053 - MPMX19_05230 0.23 -1.5
756,349 + MPMX19_05230 0.47 -1.8
756,349 + MPMX19_05230 0.47 +0.3
756,349 + MPMX19_05230 0.47 -1.3
756,350 - MPMX19_05230 0.47 +0.4
756,350 - MPMX19_05230 0.47 -2.0
756,350 - MPMX19_05230 0.47 +0.4
756,583 + MPMX19_05230 0.66 -0.4
756,583 + MPMX19_05230 0.66 +0.4
756,584 - MPMX19_05230 0.66 -0.6
756,584 - MPMX19_05230 0.66 -0.2
756,584 - MPMX19_05230 0.66 +2.0
756,598 + MPMX19_05230 0.67 -1.2
756,598 + MPMX19_05230 0.67 -0.3
756,598 + MPMX19_05230 0.67 +0.0
756,598 + MPMX19_05230 0.67 -1.4
756,598 + MPMX19_05230 0.67 -1.0
756,598 + MPMX19_05230 0.67 -0.3
756,598 + MPMX19_05230 0.67 -0.3
756,598 + MPMX19_05230 0.67 -2.2
756,599 - MPMX19_05230 0.67 -1.1
756,599 - MPMX19_05230 0.67 -0.3
756,599 - MPMX19_05230 0.67 -0.4
756,599 - MPMX19_05230 0.67 -0.8
756,599 - MPMX19_05230 0.67 -0.6
756,599 - MPMX19_05230 0.67 +0.1
756,599 - MPMX19_05230 0.67 +0.2
756,599 - MPMX19_05230 0.67 +0.4
756,599 - MPMX19_05230 0.67 -1.4
756,599 - MPMX19_05230 0.67 +1.4
756,667 + MPMX19_05230 0.73 -1.0
756,667 + MPMX19_05230 0.73 -1.4
756,667 + MPMX19_05230 0.73 -0.4
756,667 + MPMX19_05230 0.73 -2.3
756,667 + MPMX19_05230 0.73 -0.6
756,667 + MPMX19_05230 0.73 -1.8
756,667 + MPMX19_05230 0.73 -1.2
756,667 + MPMX19_05230 0.73 -0.5
756,667 + MPMX19_05230 0.73 -1.2
756,667 - MPMX19_05230 0.73 -2.4
756,668 - MPMX19_05230 0.73 -1.4
756,668 - MPMX19_05230 0.73 -0.6
756,668 - MPMX19_05230 0.73 -0.2
756,668 - MPMX19_05230 0.73 -1.3
756,668 - MPMX19_05230 0.73 -0.2
756,668 - MPMX19_05230 0.73 -1.0
756,668 - MPMX19_05230 0.73 -1.3
756,668 - MPMX19_05230 0.73 -1.3
756,668 - MPMX19_05230 0.73 +0.3
756,791 + MPMX19_05230 0.83 -1.0
756,792 - MPMX19_05230 0.83 -0.4
756,823 + MPMX19_05230 0.86 +0.1
756,823 + MPMX19_05230 0.86 -0.3
756,823 + MPMX19_05230 0.86 -0.5
756,823 + MPMX19_05230 0.86 +0.4
756,823 + MPMX19_05230 0.86 -0.8
756,824 - MPMX19_05230 0.86 +0.3
756,850 + MPMX19_05230 0.88 -0.4
756,850 + MPMX19_05230 0.88 +0.3
756,851 - MPMX19_05230 0.88 -1.4
756,851 - MPMX19_05230 0.88 -1.4
756,851 - MPMX19_05230 0.88 +0.0
756,851 - MPMX19_05230 0.88 -0.7
756,851 - MPMX19_05230 0.88 +1.3
756,853 + MPMX19_05230 0.88 -1.2
756,853 + MPMX19_05230 0.88 -1.3
756,853 + MPMX19_05230 0.88 +0.1
756,853 + MPMX19_05230 0.88 -0.9
756,853 + MPMX19_05230 0.88 -0.5
756,853 + MPMX19_05230 0.88 +0.7
756,853 + MPMX19_05230 0.88 +0.1
756,853 + MPMX19_05230 0.88 -0.9
756,853 + MPMX19_05230 0.88 -1.9
756,853 + MPMX19_05230 0.88 +0.4
756,853 + MPMX19_05230 0.88 -0.6
756,854 - MPMX19_05230 0.88 -0.4
756,854 - MPMX19_05230 0.88 -1.4
756,854 - MPMX19_05230 0.88 -0.8
756,854 - MPMX19_05230 0.88 +0.8
756,854 - MPMX19_05230 0.88 -2.4
756,854 - MPMX19_05230 0.88 -0.1
756,854 - MPMX19_05230 0.88 -0.2
756,854 - MPMX19_05230 0.88 -0.8
757,184 - -1.4
757,238 + +0.1
757,238 + +0.8
757,238 + -1.3
757,238 + +0.4
757,238 + -0.6
757,238 + -0.2
757,238 + -0.7
757,238 + -2.0
757,239 - -1.0
757,239 - -0.1
757,239 - -0.2
757,239 - +0.8
757,239 - -1.4
757,239 - +0.0
757,239 - +0.0
757,239 - +0.6
757,239 - +0.0
757,239 - -0.9
757,239 - -2.5
757,239 - -1.0
757,239 - -1.7
757,253 - -0.7
757,582 - MPMX19_05231 0.38 -0.6
757,706 + MPMX19_05231 0.53 -0.4
757,706 + MPMX19_05231 0.53 -2.1
757,706 + MPMX19_05231 0.53 -0.6
757,706 + MPMX19_05231 0.53 -1.6
757,706 + MPMX19_05231 0.53 -0.5
757,706 + MPMX19_05231 0.53 -0.2
757,706 + MPMX19_05231 0.53 -1.8
757,707 - MPMX19_05231 0.53 -0.7
757,707 - MPMX19_05231 0.53 -0.8
757,707 - MPMX19_05231 0.53 +0.8
757,707 - MPMX19_05231 0.53 -0.2
757,707 - MPMX19_05231 0.53 +1.0
757,707 - MPMX19_05231 0.53 +0.2
757,707 - MPMX19_05231 0.53 -0.1
757,707 - MPMX19_05231 0.53 -2.6
757,707 - MPMX19_05231 0.53 -0.4
757,707 - MPMX19_05231 0.53 +0.3
757,707 - MPMX19_05231 0.53 +0.0
757,707 - MPMX19_05231 0.53 -1.1
757,707 - MPMX19_05231 0.53 +0.8
757,707 - MPMX19_05231 0.53 -1.3
757,925 + MPMX19_05231 0.80 -0.6
757,926 - MPMX19_05231 0.80 +0.4

Or see this region's nucleotide sequence