Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05208 and MPMX19_05209 are separated by 33 nucleotides MPMX19_05209 and MPMX19_05210 are separated by 10 nucleotides
MPMX19_05208: MPMX19_05208 - hypothetical protein, at 714,597 to 734,141
_05208
MPMX19_05209: MPMX19_05209 - hypothetical protein, at 734,175 to 735,857
_05209
MPMX19_05210: MPMX19_05210 - Delta(1)-pyrroline-2-carboxylate reductase 1, at 735,868 to 736,800
_05210
Position (kb) 734
735
736 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 733.275 kb on + strand at 733.275 kb on + strand at 733.275 kb on + strand at 733.275 kb on + strand at 733.275 kb on + strand at 733.275 kb on + strand at 733.276 kb on - strand at 733.276 kb on - strand at 733.277 kb on + strand at 733.277 kb on + strand at 733.277 kb on + strand at 733.278 kb on - strand at 733.278 kb on - strand at 733.323 kb on - strand at 733.350 kb on + strand at 733.350 kb on + strand at 733.350 kb on + strand at 733.350 kb on + strand at 733.350 kb on + strand at 733.351 kb on - strand at 733.351 kb on - strand at 733.351 kb on - strand at 733.453 kb on - strand at 733.497 kb on - strand at 733.524 kb on + strand at 733.525 kb on - strand at 733.525 kb on - strand at 733.525 kb on - strand at 733.525 kb on - strand at 733.525 kb on - strand at 733.528 kb on + strand at 733.528 kb on + strand at 733.528 kb on + strand at 733.529 kb on - strand at 733.529 kb on - strand at 733.529 kb on - strand at 733.529 kb on - strand at 733.608 kb on + strand at 733.608 kb on + strand at 733.608 kb on + strand at 733.608 kb on + strand at 733.616 kb on + strand at 733.617 kb on - strand at 733.617 kb on - strand at 733.617 kb on - strand at 733.680 kb on + strand at 733.680 kb on + strand at 733.680 kb on + strand at 733.680 kb on + strand at 733.680 kb on + strand at 733.681 kb on - strand at 733.681 kb on - strand at 733.821 kb on - strand at 733.956 kb on + strand at 733.956 kb on + strand at 733.957 kb on - strand at 733.957 kb on - strand at 733.976 kb on + strand at 733.976 kb on + strand at 733.976 kb on + strand at 733.976 kb on + strand at 733.976 kb on + strand at 733.976 kb on + strand at 733.976 kb on + strand at 733.976 kb on + strand at 733.977 kb on - strand at 733.977 kb on - strand at 733.977 kb on - strand at 733.977 kb on - strand at 733.977 kb on - strand at 733.977 kb on - strand at 733.977 kb on - strand at 733.977 kb on - strand at 733.977 kb on - strand at 733.977 kb on - strand at 733.977 kb on - strand at 733.977 kb on - strand at 733.977 kb on - strand at 734.238 kb on + strand at 734.391 kb on + strand, within MPMX19_05209 at 734.391 kb on + strand, within MPMX19_05209 at 734.392 kb on - strand, within MPMX19_05209 at 734.436 kb on + strand, within MPMX19_05209 at 734.436 kb on + strand, within MPMX19_05209 at 734.436 kb on + strand, within MPMX19_05209 at 734.436 kb on + strand, within MPMX19_05209 at 734.437 kb on - strand, within MPMX19_05209 at 734.437 kb on - strand, within MPMX19_05209 at 734.487 kb on + strand, within MPMX19_05209 at 734.487 kb on + strand, within MPMX19_05209 at 734.487 kb on + strand, within MPMX19_05209 at 734.488 kb on - strand, within MPMX19_05209 at 734.488 kb on - strand, within MPMX19_05209 at 734.488 kb on - strand, within MPMX19_05209 at 734.488 kb on - strand, within MPMX19_05209 at 734.488 kb on - strand, within MPMX19_05209 at 734.488 kb on - strand, within MPMX19_05209 at 734.488 kb on - strand, within MPMX19_05209 at 734.488 kb on - strand, within MPMX19_05209 at 734.560 kb on - strand, within MPMX19_05209 at 734.560 kb on - strand, within MPMX19_05209 at 734.994 kb on + strand, within MPMX19_05209 at 735.003 kb on + strand, within MPMX19_05209 at 735.004 kb on - strand, within MPMX19_05209 at 735.062 kb on + strand, within MPMX19_05209 at 735.062 kb on + strand, within MPMX19_05209 at 735.062 kb on + strand, within MPMX19_05209 at 735.246 kb on + strand, within MPMX19_05209 at 735.246 kb on + strand, within MPMX19_05209 at 735.246 kb on + strand, within MPMX19_05209 at 735.246 kb on + strand, within MPMX19_05209 at 735.246 kb on + strand, within MPMX19_05209 at 735.246 kb on + strand, within MPMX19_05209 at 735.246 kb on + strand, within MPMX19_05209 at 735.246 kb on + strand, within MPMX19_05209 at 735.246 kb on + strand, within MPMX19_05209 at 735.246 kb on + strand, within MPMX19_05209 at 735.246 kb on + strand, within MPMX19_05209 at 735.246 kb on + strand, within MPMX19_05209 at 735.246 kb on + strand, within MPMX19_05209 at 735.246 kb on + strand, within MPMX19_05209 at 735.246 kb on + strand, within MPMX19_05209 at 735.246 kb on + strand, within MPMX19_05209 at 735.246 kb on + strand, within MPMX19_05209 at 735.246 kb on + strand, within MPMX19_05209 at 735.246 kb on + strand, within MPMX19_05209 at 735.247 kb on - strand, within MPMX19_05209 at 735.247 kb on - strand, within MPMX19_05209 at 735.247 kb on - strand, within MPMX19_05209 at 735.247 kb on - strand, within MPMX19_05209 at 735.247 kb on - strand, within MPMX19_05209 at 735.247 kb on - strand, within MPMX19_05209 at 735.247 kb on - strand, within MPMX19_05209 at 735.247 kb on - strand, within MPMX19_05209 at 735.247 kb on - strand, within MPMX19_05209 at 735.247 kb on - strand, within MPMX19_05209 at 735.247 kb on - strand, within MPMX19_05209 at 735.247 kb on - strand, within MPMX19_05209 at 735.247 kb on - strand, within MPMX19_05209 at 735.247 kb on - strand, within MPMX19_05209 at 735.375 kb on + strand, within MPMX19_05209 at 735.447 kb on + strand, within MPMX19_05209 at 735.447 kb on + strand, within MPMX19_05209 at 735.447 kb on + strand, within MPMX19_05209 at 735.447 kb on + strand, within MPMX19_05209 at 735.447 kb on + strand, within MPMX19_05209 at 735.447 kb on + strand, within MPMX19_05209 at 735.447 kb on + strand, within MPMX19_05209 at 735.448 kb on - strand, within MPMX19_05209 at 735.448 kb on - strand, within MPMX19_05209 at 735.448 kb on - strand, within MPMX19_05209 at 735.448 kb on - strand, within MPMX19_05209 at 735.448 kb on - strand, within MPMX19_05209 at 735.448 kb on - strand, within MPMX19_05209 at 735.448 kb on - strand, within MPMX19_05209 at 735.448 kb on - strand, within MPMX19_05209 at 735.450 kb on + strand, within MPMX19_05209 at 735.450 kb on + strand, within MPMX19_05209 at 735.450 kb on + strand, within MPMX19_05209 at 735.450 kb on + strand, within MPMX19_05209 at 735.451 kb on - strand, within MPMX19_05209 at 735.547 kb on + strand, within MPMX19_05209 at 735.547 kb on + strand, within MPMX19_05209 at 735.548 kb on - strand, within MPMX19_05209 at 735.548 kb on - strand, within MPMX19_05209 at 735.648 kb on + strand, within MPMX19_05209 at 735.648 kb on + strand, within MPMX19_05209 at 735.648 kb on + strand, within MPMX19_05209 at 735.648 kb on + strand, within MPMX19_05209 at 735.649 kb on - strand, within MPMX19_05209 at 735.649 kb on - strand, within MPMX19_05209 at 735.649 kb on - strand, within MPMX19_05209 at 735.649 kb on - strand, within MPMX19_05209 at 735.649 kb on - strand, within MPMX19_05209 at 735.649 kb on - strand, within MPMX19_05209 at 735.649 kb on - strand, within MPMX19_05209 at 735.649 kb on - strand, within MPMX19_05209 at 735.675 kb on + strand, within MPMX19_05209 at 735.675 kb on + strand, within MPMX19_05209 at 735.675 kb on + strand, within MPMX19_05209 at 735.676 kb on - strand, within MPMX19_05209 at 735.676 kb on - strand, within MPMX19_05209 at 735.696 kb on + strand at 735.696 kb on + strand at 735.696 kb on + strand at 735.696 kb on + strand at 735.696 kb on + strand at 735.696 kb on + strand at 735.697 kb on - strand at 735.697 kb on - strand at 735.697 kb on - strand at 735.697 kb on - strand at 735.697 kb on - strand at 735.697 kb on - strand at 735.697 kb on - strand at 735.697 kb on - strand at 735.697 kb on - strand at 735.697 kb on - strand at 735.810 kb on + strand at 735.810 kb on + strand at 735.855 kb on + strand at 735.855 kb on + strand at 735.855 kb on + strand at 735.855 kb on + strand at 735.856 kb on - strand at 735.856 kb on - strand at 735.856 kb on - strand at 735.856 kb on - strand at 735.856 kb on - strand at 736.115 kb on + strand, within MPMX19_05210 at 736.115 kb on + strand, within MPMX19_05210 at 736.115 kb on + strand, within MPMX19_05210 at 736.116 kb on - strand, within MPMX19_05210 at 736.116 kb on - strand, within MPMX19_05210 at 736.116 kb on - strand, within MPMX19_05210 at 736.185 kb on - strand, within MPMX19_05210 at 736.185 kb on - strand, within MPMX19_05210 at 736.185 kb on - strand, within MPMX19_05210 at 736.237 kb on + strand, within MPMX19_05210 at 736.237 kb on + strand, within MPMX19_05210 at 736.237 kb on + strand, within MPMX19_05210 at 736.238 kb on - strand, within MPMX19_05210 at 736.238 kb on - strand, within MPMX19_05210 at 736.347 kb on - strand, within MPMX19_05210 at 736.373 kb on + strand, within MPMX19_05210 at 736.373 kb on + strand, within MPMX19_05210 at 736.374 kb on - strand, within MPMX19_05210 at 736.374 kb on - strand, within MPMX19_05210 at 736.374 kb on - strand, within MPMX19_05210 at 736.374 kb on - strand, within MPMX19_05210 at 736.374 kb on - strand, within MPMX19_05210 at 736.526 kb on + strand, within MPMX19_05210 at 736.526 kb on + strand, within MPMX19_05210 at 736.526 kb on + strand, within MPMX19_05210 at 736.527 kb on - strand, within MPMX19_05210 at 736.527 kb on - strand, within MPMX19_05210 at 736.527 kb on - strand, within MPMX19_05210 at 736.700 kb on + strand, within MPMX19_05210 at 736.700 kb on + strand, within MPMX19_05210 at 736.701 kb on - strand, within MPMX19_05210 at 736.846 kb on + strand at 736.846 kb on + strand at 736.846 kb on + strand at 736.846 kb on + strand at 736.846 kb on + strand at 736.846 kb on + strand at 736.846 kb on + strand at 736.847 kb on - strand at 736.847 kb on - strand at 736.847 kb on - strand at 736.847 kb on - strand at 736.847 kb on - strand at 736.847 kb on - strand at 736.848 kb on + strand at 736.849 kb on - strand at 736.849 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 733,275 + -2.1 733,275 + -1.1 733,275 + -0.7 733,275 + -0.5 733,275 + +0.3 733,275 + -0.1 733,276 - -1.7 733,276 - +0.4 733,277 + -0.4 733,277 + -1.7 733,277 + +1.0 733,278 - +0.4 733,278 - -1.1 733,323 - -2.7 733,350 + -0.4 733,350 + -0.2 733,350 + -1.1 733,350 + -0.1 733,350 + +0.3 733,351 - -0.7 733,351 - -3.3 733,351 - +0.4 733,453 - +0.4 733,497 - -0.6 733,524 + +0.0 733,525 - -0.3 733,525 - -1.1 733,525 - -0.6 733,525 - -0.5 733,525 - -1.7 733,528 + -0.0 733,528 + -0.6 733,528 + +0.8 733,529 - +0.3 733,529 - -1.1 733,529 - -0.6 733,529 - -1.2 733,608 + -0.7 733,608 + -1.0 733,608 + -0.4 733,608 + -1.2 733,616 + -0.9 733,617 - -1.2 733,617 - +0.0 733,617 - -2.6 733,680 + -0.9 733,680 + +1.4 733,680 + -0.6 733,680 + -0.1 733,680 + -1.1 733,681 - -1.3 733,681 - +0.2 733,821 - +0.1 733,956 + -0.8 733,956 + -0.1 733,957 - -0.3 733,957 - -0.6 733,976 + -0.4 733,976 + -0.8 733,976 + +0.0 733,976 + -0.9 733,976 + +0.5 733,976 + -1.2 733,976 + -0.3 733,976 + -1.2 733,977 - -1.5 733,977 - -1.9 733,977 - +0.4 733,977 - -1.1 733,977 - +0.7 733,977 - +0.2 733,977 - +0.3 733,977 - -0.3 733,977 - -1.2 733,977 - +0.4 733,977 - -1.0 733,977 - +1.4 733,977 - -0.6 734,238 + -0.9 734,391 + MPMX19_05209 0.13 +1.8 734,391 + MPMX19_05209 0.13 -0.3 734,392 - MPMX19_05209 0.13 -0.3 734,436 + MPMX19_05209 0.16 -1.2 734,436 + MPMX19_05209 0.16 -1.2 734,436 + MPMX19_05209 0.16 -0.6 734,436 + MPMX19_05209 0.16 +0.6 734,437 - MPMX19_05209 0.16 -0.4 734,437 - MPMX19_05209 0.16 +0.6 734,487 + MPMX19_05209 0.19 +0.0 734,487 + MPMX19_05209 0.19 -1.4 734,487 + MPMX19_05209 0.19 -0.6 734,488 - MPMX19_05209 0.19 -0.9 734,488 - MPMX19_05209 0.19 -0.8 734,488 - MPMX19_05209 0.19 -0.7 734,488 - MPMX19_05209 0.19 +0.5 734,488 - MPMX19_05209 0.19 -0.1 734,488 - MPMX19_05209 0.19 +0.1 734,488 - MPMX19_05209 0.19 -0.7 734,488 - MPMX19_05209 0.19 +0.3 734,560 - MPMX19_05209 0.23 +0.3 734,560 - MPMX19_05209 0.23 -2.1 734,994 + MPMX19_05209 0.49 +1.2 735,003 + MPMX19_05209 0.49 -1.9 735,004 - MPMX19_05209 0.49 +0.1 735,062 + MPMX19_05209 0.53 -0.1 735,062 + MPMX19_05209 0.53 +0.0 735,062 + MPMX19_05209 0.53 +0.4 735,246 + MPMX19_05209 0.64 -0.8 735,246 + MPMX19_05209 0.64 +1.0 735,246 + MPMX19_05209 0.64 -1.0 735,246 + MPMX19_05209 0.64 -0.6 735,246 + MPMX19_05209 0.64 -1.9 735,246 + MPMX19_05209 0.64 -1.3 735,246 + MPMX19_05209 0.64 -1.0 735,246 + MPMX19_05209 0.64 +1.4 735,246 + MPMX19_05209 0.64 +0.6 735,246 + MPMX19_05209 0.64 -0.3 735,246 + MPMX19_05209 0.64 +1.3 735,246 + MPMX19_05209 0.64 +0.6 735,246 + MPMX19_05209 0.64 -0.4 735,246 + MPMX19_05209 0.64 -0.2 735,246 + MPMX19_05209 0.64 +0.4 735,246 + MPMX19_05209 0.64 -0.6 735,246 + MPMX19_05209 0.64 -0.7 735,246 + MPMX19_05209 0.64 +0.4 735,246 + MPMX19_05209 0.64 -1.3 735,247 - MPMX19_05209 0.64 -1.8 735,247 - MPMX19_05209 0.64 -0.8 735,247 - MPMX19_05209 0.64 +0.8 735,247 - MPMX19_05209 0.64 -0.2 735,247 - MPMX19_05209 0.64 -0.6 735,247 - MPMX19_05209 0.64 +0.3 735,247 - MPMX19_05209 0.64 +0.8 735,247 - MPMX19_05209 0.64 -1.6 735,247 - MPMX19_05209 0.64 +0.6 735,247 - MPMX19_05209 0.64 +0.6 735,247 - MPMX19_05209 0.64 -1.0 735,247 - MPMX19_05209 0.64 +0.7 735,247 - MPMX19_05209 0.64 -1.0 735,247 - MPMX19_05209 0.64 -0.6 735,375 + MPMX19_05209 0.71 +0.4 735,447 + MPMX19_05209 0.76 -0.8 735,447 + MPMX19_05209 0.76 -2.9 735,447 + MPMX19_05209 0.76 -2.1 735,447 + MPMX19_05209 0.76 +0.2 735,447 + MPMX19_05209 0.76 -1.8 735,447 + MPMX19_05209 0.76 -0.8 735,447 + MPMX19_05209 0.76 -1.4 735,448 - MPMX19_05209 0.76 -1.9 735,448 - MPMX19_05209 0.76 -2.9 735,448 - MPMX19_05209 0.76 -0.6 735,448 - MPMX19_05209 0.76 +1.0 735,448 - MPMX19_05209 0.76 +0.9 735,448 - MPMX19_05209 0.76 +0.0 735,448 - MPMX19_05209 0.76 +1.0 735,448 - MPMX19_05209 0.76 -0.1 735,450 + MPMX19_05209 0.76 -0.3 735,450 + MPMX19_05209 0.76 -2.4 735,450 + MPMX19_05209 0.76 -0.6 735,450 + MPMX19_05209 0.76 -1.6 735,451 - MPMX19_05209 0.76 +0.1 735,547 + MPMX19_05209 0.82 -0.3 735,547 + MPMX19_05209 0.82 -0.3 735,548 - MPMX19_05209 0.82 -0.5 735,548 - MPMX19_05209 0.82 -0.9 735,648 + MPMX19_05209 0.88 +0.3 735,648 + MPMX19_05209 0.88 -0.4 735,648 + MPMX19_05209 0.88 +1.2 735,648 + MPMX19_05209 0.88 -0.3 735,649 - MPMX19_05209 0.88 -0.2 735,649 - MPMX19_05209 0.88 -0.6 735,649 - MPMX19_05209 0.88 -0.2 735,649 - MPMX19_05209 0.88 -0.8 735,649 - MPMX19_05209 0.88 -1.0 735,649 - MPMX19_05209 0.88 -0.8 735,649 - MPMX19_05209 0.88 +0.1 735,649 - MPMX19_05209 0.88 -1.3 735,675 + MPMX19_05209 0.89 +0.9 735,675 + MPMX19_05209 0.89 -0.8 735,675 + MPMX19_05209 0.89 +0.5 735,676 - MPMX19_05209 0.89 +0.8 735,676 - MPMX19_05209 0.89 -0.6 735,696 + -1.6 735,696 + -0.2 735,696 + -1.7 735,696 + -0.3 735,696 + -0.5 735,696 + -0.2 735,697 - -1.6 735,697 - +0.0 735,697 - +0.8 735,697 - +1.7 735,697 - +0.4 735,697 - -2.0 735,697 - -2.7 735,697 - -0.8 735,697 - +0.7 735,697 - -0.6 735,810 + -0.8 735,810 + -1.2 735,855 + -1.4 735,855 + +1.3 735,855 + +0.7 735,855 + -1.8 735,856 - +0.6 735,856 - -2.1 735,856 - -0.3 735,856 - -0.4 735,856 - -0.8 736,115 + MPMX19_05210 0.26 -0.8 736,115 + MPMX19_05210 0.26 +0.0 736,115 + MPMX19_05210 0.26 +0.4 736,116 - MPMX19_05210 0.27 -1.4 736,116 - MPMX19_05210 0.27 +1.0 736,116 - MPMX19_05210 0.27 -0.4 736,185 - MPMX19_05210 0.34 -1.3 736,185 - MPMX19_05210 0.34 +0.3 736,185 - MPMX19_05210 0.34 +0.4 736,237 + MPMX19_05210 0.40 +0.3 736,237 + MPMX19_05210 0.40 -1.8 736,237 + MPMX19_05210 0.40 -1.6 736,238 - MPMX19_05210 0.40 -1.7 736,238 - MPMX19_05210 0.40 -0.6 736,347 - MPMX19_05210 0.51 -0.2 736,373 + MPMX19_05210 0.54 -2.2 736,373 + MPMX19_05210 0.54 -0.6 736,374 - MPMX19_05210 0.54 -0.6 736,374 - MPMX19_05210 0.54 -2.9 736,374 - MPMX19_05210 0.54 -0.4 736,374 - MPMX19_05210 0.54 +0.0 736,374 - MPMX19_05210 0.54 -0.6 736,526 + MPMX19_05210 0.71 +0.5 736,526 + MPMX19_05210 0.71 -1.1 736,526 + MPMX19_05210 0.71 +0.5 736,527 - MPMX19_05210 0.71 -1.1 736,527 - MPMX19_05210 0.71 -0.3 736,527 - MPMX19_05210 0.71 -0.3 736,700 + MPMX19_05210 0.89 -1.5 736,700 + MPMX19_05210 0.89 -0.6 736,701 - MPMX19_05210 0.89 -0.7 736,846 + -0.3 736,846 + -1.3 736,846 + -0.2 736,846 + -0.9 736,846 + -1.0 736,846 + -2.0 736,846 + -1.0 736,847 - -1.2 736,847 - +0.0 736,847 - -0.6 736,847 - +1.0 736,847 - +1.4 736,847 - -0.4 736,848 + -1.3 736,849 - -0.8 736,849 - +0.1
Or see this region's nucleotide sequence