Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05202 and MPMX19_05203 are separated by 0 nucleotides MPMX19_05203 and MPMX19_05204 overlap by 4 nucleotides MPMX19_05204 and MPMX19_05205 are separated by 4 nucleotides
MPMX19_05202: MPMX19_05202 - Tryptophan synthase beta chain, at 706,323 to 707,603
_05202
MPMX19_05203: MPMX19_05203 - hypothetical protein, at 707,604 to 708,515
_05203
MPMX19_05204: MPMX19_05204 - Vitamin B12 import ATP-binding protein BtuD, at 708,512 to 709,348
_05204
MPMX19_05205: MPMX19_05205 - hypothetical protein, at 709,353 to 710,384
_05205
Position (kb) 707
708
709 Strain fitness (log2 ratio) -2
-1
0
1 at 707.444 kb on - strand, within MPMX19_05202 at 707.722 kb on + strand, within MPMX19_05203 at 707.722 kb on + strand, within MPMX19_05203 at 707.722 kb on + strand, within MPMX19_05203 at 707.722 kb on + strand, within MPMX19_05203 at 707.722 kb on + strand, within MPMX19_05203 at 707.890 kb on + strand, within MPMX19_05203 at 707.890 kb on + strand, within MPMX19_05203 at 707.890 kb on + strand, within MPMX19_05203 at 707.891 kb on - strand, within MPMX19_05203 at 707.891 kb on - strand, within MPMX19_05203 at 707.912 kb on - strand, within MPMX19_05203 at 707.912 kb on - strand, within MPMX19_05203 at 708.442 kb on + strand at 708.442 kb on + strand at 708.442 kb on + strand at 708.442 kb on + strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.622 kb on - strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.228 kb on - strand, within MPMX19_05204 at 709.228 kb on - strand, within MPMX19_05204 at 709.228 kb on - strand, within MPMX19_05204 at 709.228 kb on - strand, within MPMX19_05204 at 709.228 kb on - strand, within MPMX19_05204 at 709.228 kb on - strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.332 kb on + strand at 709.333 kb on - strand at 709.390 kb on + strand at 709.390 kb on + strand at 709.390 kb on + strand at 709.390 kb on + strand at 709.391 kb on - strand at 709.391 kb on - strand at 709.391 kb on - strand at 709.391 kb on - strand at 709.391 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 707,444 - MPMX19_05202 0.88 -0.2 707,722 + MPMX19_05203 0.13 -2.2 707,722 + MPMX19_05203 0.13 +0.3 707,722 + MPMX19_05203 0.13 -0.3 707,722 + MPMX19_05203 0.13 -1.4 707,722 + MPMX19_05203 0.13 -0.6 707,890 + MPMX19_05203 0.31 +0.0 707,890 + MPMX19_05203 0.31 +1.7 707,890 + MPMX19_05203 0.31 -1.8 707,891 - MPMX19_05203 0.31 -0.6 707,891 - MPMX19_05203 0.31 -0.6 707,912 - MPMX19_05203 0.34 -0.8 707,912 - MPMX19_05203 0.34 -1.9 708,442 + +0.4 708,442 + -0.7 708,442 + -0.6 708,442 + +0.2 708,443 - +0.4 708,443 - -0.2 708,443 - -0.4 708,443 - -0.6 708,443 - -0.6 708,443 - -1.4 708,443 - -0.3 708,622 - MPMX19_05204 0.13 -0.5 709,191 + MPMX19_05204 0.81 -1.2 709,191 + MPMX19_05204 0.81 +0.0 709,191 + MPMX19_05204 0.81 -1.1 709,191 + MPMX19_05204 0.81 -1.2 709,191 + MPMX19_05204 0.81 -2.3 709,191 + MPMX19_05204 0.81 -1.2 709,191 + MPMX19_05204 0.81 +0.1 709,191 + MPMX19_05204 0.81 +0.8 709,191 + MPMX19_05204 0.81 -0.6 709,191 + MPMX19_05204 0.81 -0.2 709,191 + MPMX19_05204 0.81 -0.4 709,191 + MPMX19_05204 0.81 -0.8 709,191 + MPMX19_05204 0.81 -0.2 709,191 + MPMX19_05204 0.81 -2.1 709,191 + MPMX19_05204 0.81 -2.2 709,191 + MPMX19_05204 0.81 +0.0 709,228 - MPMX19_05204 0.86 -0.6 709,228 - MPMX19_05204 0.86 -0.1 709,228 - MPMX19_05204 0.86 -0.1 709,228 - MPMX19_05204 0.86 -2.0 709,228 - MPMX19_05204 0.86 -0.5 709,228 - MPMX19_05204 0.86 -1.8 709,260 + MPMX19_05204 0.89 -1.2 709,260 + MPMX19_05204 0.89 -0.6 709,260 + MPMX19_05204 0.89 +0.0 709,260 + MPMX19_05204 0.89 -1.2 709,260 + MPMX19_05204 0.89 -0.7 709,260 + MPMX19_05204 0.89 -0.8 709,260 + MPMX19_05204 0.89 -0.2 709,260 + MPMX19_05204 0.89 -0.9 709,260 + MPMX19_05204 0.89 -1.0 709,260 + MPMX19_05204 0.89 +0.3 709,260 + MPMX19_05204 0.89 -0.6 709,260 + MPMX19_05204 0.89 -0.9 709,332 + +0.0 709,333 - +0.5 709,390 + -0.8 709,390 + +1.0 709,390 + -0.3 709,390 + +1.0 709,391 - -1.2 709,391 - -0.4 709,391 - +0.6 709,391 - +1.3 709,391 - +0.5
Or see this region's nucleotide sequence