Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05201 and MPMX19_05202 overlap by 4 nucleotides MPMX19_05202 and MPMX19_05203 are separated by 0 nucleotides MPMX19_05203 and MPMX19_05204 overlap by 4 nucleotides
MPMX19_05201: MPMX19_05201 - Hydroxycarboxylate dehydrogenase B, at 705,262 to 706,326
_05201
MPMX19_05202: MPMX19_05202 - Tryptophan synthase beta chain, at 706,323 to 707,603
_05202
MPMX19_05203: MPMX19_05203 - hypothetical protein, at 707,604 to 708,515
_05203
MPMX19_05204: MPMX19_05204 - Vitamin B12 import ATP-binding protein BtuD, at 708,512 to 709,348
_05204
Position (kb) 706
707
708 Strain fitness (log2 ratio) -2
-1
0
1
2 at 705.617 kb on + strand, within MPMX19_05201 at 705.618 kb on - strand, within MPMX19_05201 at 705.911 kb on + strand, within MPMX19_05201 at 705.911 kb on + strand, within MPMX19_05201 at 705.911 kb on + strand, within MPMX19_05201 at 705.911 kb on + strand, within MPMX19_05201 at 705.911 kb on + strand, within MPMX19_05201 at 705.912 kb on - strand, within MPMX19_05201 at 705.912 kb on - strand, within MPMX19_05201 at 705.912 kb on - strand, within MPMX19_05201 at 705.951 kb on - strand, within MPMX19_05201 at 705.969 kb on + strand, within MPMX19_05201 at 706.164 kb on - strand, within MPMX19_05201 at 706.164 kb on - strand, within MPMX19_05201 at 706.164 kb on - strand, within MPMX19_05201 at 706.351 kb on + strand at 706.351 kb on + strand at 706.351 kb on + strand at 706.352 kb on - strand at 706.352 kb on - strand at 706.402 kb on + strand at 706.402 kb on + strand at 706.478 kb on + strand, within MPMX19_05202 at 706.478 kb on + strand, within MPMX19_05202 at 706.478 kb on + strand, within MPMX19_05202 at 706.479 kb on - strand, within MPMX19_05202 at 706.481 kb on - strand, within MPMX19_05202 at 706.489 kb on + strand, within MPMX19_05202 at 706.489 kb on + strand, within MPMX19_05202 at 706.489 kb on + strand, within MPMX19_05202 at 706.489 kb on + strand, within MPMX19_05202 at 706.490 kb on - strand, within MPMX19_05202 at 706.490 kb on - strand, within MPMX19_05202 at 707.444 kb on - strand, within MPMX19_05202 at 707.722 kb on + strand, within MPMX19_05203 at 707.722 kb on + strand, within MPMX19_05203 at 707.722 kb on + strand, within MPMX19_05203 at 707.722 kb on + strand, within MPMX19_05203 at 707.722 kb on + strand, within MPMX19_05203 at 707.890 kb on + strand, within MPMX19_05203 at 707.890 kb on + strand, within MPMX19_05203 at 707.890 kb on + strand, within MPMX19_05203 at 707.891 kb on - strand, within MPMX19_05203 at 707.891 kb on - strand, within MPMX19_05203 at 707.912 kb on - strand, within MPMX19_05203 at 707.912 kb on - strand, within MPMX19_05203 at 708.442 kb on + strand at 708.442 kb on + strand at 708.442 kb on + strand at 708.442 kb on + strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 705,617 + MPMX19_05201 0.33 -0.4 705,618 - MPMX19_05201 0.33 -0.5 705,911 + MPMX19_05201 0.61 +1.2 705,911 + MPMX19_05201 0.61 -0.3 705,911 + MPMX19_05201 0.61 +0.6 705,911 + MPMX19_05201 0.61 -0.6 705,911 + MPMX19_05201 0.61 +0.1 705,912 - MPMX19_05201 0.61 -1.4 705,912 - MPMX19_05201 0.61 -1.0 705,912 - MPMX19_05201 0.61 -1.4 705,951 - MPMX19_05201 0.65 -1.7 705,969 + MPMX19_05201 0.66 -0.8 706,164 - MPMX19_05201 0.85 +0.0 706,164 - MPMX19_05201 0.85 +1.8 706,164 - MPMX19_05201 0.85 -1.4 706,351 + -1.4 706,351 + +0.7 706,351 + -0.6 706,352 - -0.6 706,352 - -0.9 706,402 + +0.0 706,402 + -0.9 706,478 + MPMX19_05202 0.12 -0.1 706,478 + MPMX19_05202 0.12 -0.3 706,478 + MPMX19_05202 0.12 +0.5 706,479 - MPMX19_05202 0.12 -0.3 706,481 - MPMX19_05202 0.12 -1.4 706,489 + MPMX19_05202 0.13 +0.3 706,489 + MPMX19_05202 0.13 +0.4 706,489 + MPMX19_05202 0.13 -0.3 706,489 + MPMX19_05202 0.13 -0.8 706,490 - MPMX19_05202 0.13 -0.2 706,490 - MPMX19_05202 0.13 +0.0 707,444 - MPMX19_05202 0.88 -0.2 707,722 + MPMX19_05203 0.13 -2.2 707,722 + MPMX19_05203 0.13 +0.3 707,722 + MPMX19_05203 0.13 -0.3 707,722 + MPMX19_05203 0.13 -1.4 707,722 + MPMX19_05203 0.13 -0.6 707,890 + MPMX19_05203 0.31 +0.0 707,890 + MPMX19_05203 0.31 +1.7 707,890 + MPMX19_05203 0.31 -1.8 707,891 - MPMX19_05203 0.31 -0.6 707,891 - MPMX19_05203 0.31 -0.6 707,912 - MPMX19_05203 0.34 -0.8 707,912 - MPMX19_05203 0.34 -1.9 708,442 + +0.4 708,442 + -0.7 708,442 + -0.6 708,442 + +0.2 708,443 - +0.4 708,443 - -0.2 708,443 - -0.4 708,443 - -0.6 708,443 - -0.6 708,443 - -1.4 708,443 - -0.3
Or see this region's nucleotide sequence