Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05185

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05183 and MPMX19_05184 are separated by 9 nucleotidesMPMX19_05184 and MPMX19_05185 are separated by 9 nucleotidesMPMX19_05185 and MPMX19_05186 are separated by 20 nucleotides MPMX19_05183: MPMX19_05183 - Putative aliphatic sulfonates-binding protein, at 686,362 to 687,354 _05183 MPMX19_05184: MPMX19_05184 - (R)-phenoxypropionate/alpha-ketoglutarate- dioxygenase, at 687,364 to 688,242 _05184 MPMX19_05185: MPMX19_05185 - hypothetical protein, at 688,252 to 689,301 _05185 MPMX19_05186: MPMX19_05186 - Thiosulfate sulfurtransferase GlpE, at 689,322 to 690,953 _05186 Position (kb) 688 689 690Strain fitness (log2 ratio) -2 -1 0 1 2at 687.365 kb on + strandat 687.365 kb on + strandat 687.365 kb on + strandat 687.365 kb on + strandat 687.365 kb on + strandat 687.365 kb on + strandat 687.366 kb on - strandat 687.366 kb on - strandat 687.366 kb on - strandat 687.366 kb on - strandat 687.366 kb on - strandat 687.366 kb on - strandat 687.723 kb on - strand, within MPMX19_05184at 687.896 kb on + strand, within MPMX19_05184at 687.897 kb on - strand, within MPMX19_05184at 687.897 kb on - strand, within MPMX19_05184at 687.897 kb on - strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 688.380 kb on - strand, within MPMX19_05185at 688.451 kb on + strand, within MPMX19_05185at 688.451 kb on + strand, within MPMX19_05185at 688.451 kb on + strand, within MPMX19_05185at 688.451 kb on + strand, within MPMX19_05185at 688.452 kb on - strand, within MPMX19_05185at 688.452 kb on - strand, within MPMX19_05185at 688.452 kb on - strand, within MPMX19_05185at 688.452 kb on - strand, within MPMX19_05185at 688.452 kb on - strand, within MPMX19_05185at 688.452 kb on - strand, within MPMX19_05185at 688.452 kb on - strand, within MPMX19_05185at 688.605 kb on - strand, within MPMX19_05185at 688.605 kb on - strand, within MPMX19_05185at 688.814 kb on + strand, within MPMX19_05185at 688.814 kb on + strand, within MPMX19_05185at 688.814 kb on + strand, within MPMX19_05185at 688.815 kb on - strand, within MPMX19_05185at 688.815 kb on - strand, within MPMX19_05185at 688.843 kb on - strand, within MPMX19_05185at 688.901 kb on + strand, within MPMX19_05185at 688.901 kb on + strand, within MPMX19_05185at 688.901 kb on + strand, within MPMX19_05185at 688.901 kb on + strand, within MPMX19_05185at 688.902 kb on - strand, within MPMX19_05185at 688.960 kb on - strand, within MPMX19_05185at 688.974 kb on + strand, within MPMX19_05185at 689.075 kb on + strand, within MPMX19_05185at 689.075 kb on + strand, within MPMX19_05185at 689.075 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.159 kb on + strand, within MPMX19_05185at 689.159 kb on + strand, within MPMX19_05185at 689.160 kb on - strand, within MPMX19_05185at 689.393 kb on - strandat 689.393 kb on - strandat 689.393 kb on - strandat 689.393 kb on - strandat 689.393 kb on - strandat 689.393 kb on - strandat 689.443 kb on + strandat 689.443 kb on + strandat 689.587 kb on + strand, within MPMX19_05186at 689.588 kb on - strand, within MPMX19_05186at 689.588 kb on - strand, within MPMX19_05186at 689.683 kb on + strand, within MPMX19_05186at 689.683 kb on + strand, within MPMX19_05186at 689.683 kb on + strand, within MPMX19_05186at 689.683 kb on + strand, within MPMX19_05186at 689.683 kb on + strand, within MPMX19_05186at 689.683 kb on + strand, within MPMX19_05186at 689.990 kb on - strand, within MPMX19_05186at 689.990 kb on - strand, within MPMX19_05186at 689.990 kb on - strand, within MPMX19_05186at 689.990 kb on - strand, within MPMX19_05186at 690.058 kb on + strand, within MPMX19_05186at 690.058 kb on + strand, within MPMX19_05186at 690.058 kb on + strand, within MPMX19_05186at 690.058 kb on + strand, within MPMX19_05186at 690.071 kb on + strand, within MPMX19_05186at 690.072 kb on - strand, within MPMX19_05186at 690.072 kb on - strand, within MPMX19_05186

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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687,365 + -0.8
687,365 + -1.0
687,365 + +0.3
687,365 + -0.8
687,365 + -0.5
687,365 + -0.6
687,366 - -1.2
687,366 - +0.5
687,366 - -1.0
687,366 - -2.0
687,366 - -0.6
687,366 - +0.4
687,723 - MPMX19_05184 0.41 -0.7
687,896 + MPMX19_05184 0.61 +0.7
687,897 - MPMX19_05184 0.61 -0.2
687,897 - MPMX19_05184 0.61 -1.3
687,897 - MPMX19_05184 0.61 +1.8
687,980 + MPMX19_05184 0.70 -0.3
687,980 + MPMX19_05184 0.70 -1.7
687,980 + MPMX19_05184 0.70 +0.4
687,980 + MPMX19_05184 0.70 -0.0
687,980 + MPMX19_05184 0.70 +1.0
687,980 + MPMX19_05184 0.70 +0.0
687,980 + MPMX19_05184 0.70 -0.6
687,980 + MPMX19_05184 0.70 +0.3
687,980 + MPMX19_05184 0.70 +0.2
687,980 + MPMX19_05184 0.70 +0.4
687,980 + MPMX19_05184 0.70 -1.2
687,980 + MPMX19_05184 0.70 -1.3
687,980 + MPMX19_05184 0.70 -0.6
687,980 + MPMX19_05184 0.70 -1.4
687,980 + MPMX19_05184 0.70 -0.8
688,380 - MPMX19_05185 0.12 +2.0
688,451 + MPMX19_05185 0.19 -0.3
688,451 + MPMX19_05185 0.19 +0.7
688,451 + MPMX19_05185 0.19 -1.7
688,451 + MPMX19_05185 0.19 -0.2
688,452 - MPMX19_05185 0.19 +0.9
688,452 - MPMX19_05185 0.19 +1.0
688,452 - MPMX19_05185 0.19 +0.1
688,452 - MPMX19_05185 0.19 -1.2
688,452 - MPMX19_05185 0.19 -1.2
688,452 - MPMX19_05185 0.19 -0.3
688,452 - MPMX19_05185 0.19 +1.0
688,605 - MPMX19_05185 0.34 -1.3
688,605 - MPMX19_05185 0.34 +0.3
688,814 + MPMX19_05185 0.54 -0.8
688,814 + MPMX19_05185 0.54 -0.5
688,814 + MPMX19_05185 0.54 -1.3
688,815 - MPMX19_05185 0.54 +0.0
688,815 - MPMX19_05185 0.54 +0.8
688,843 - MPMX19_05185 0.56 -1.6
688,901 + MPMX19_05185 0.62 -0.2
688,901 + MPMX19_05185 0.62 +0.1
688,901 + MPMX19_05185 0.62 +0.4
688,901 + MPMX19_05185 0.62 +0.1
688,902 - MPMX19_05185 0.62 +1.0
688,960 - MPMX19_05185 0.67 +1.0
688,974 + MPMX19_05185 0.69 -1.2
689,075 + MPMX19_05185 0.78 +0.2
689,075 + MPMX19_05185 0.78 -0.8
689,075 + MPMX19_05185 0.78 -0.6
689,147 + MPMX19_05185 0.85 -0.3
689,147 + MPMX19_05185 0.85 -1.7
689,147 + MPMX19_05185 0.85 -0.2
689,147 + MPMX19_05185 0.85 -1.1
689,147 + MPMX19_05185 0.85 -1.3
689,147 + MPMX19_05185 0.85 -0.4
689,147 + MPMX19_05185 0.85 -0.1
689,147 + MPMX19_05185 0.85 -0.3
689,148 - MPMX19_05185 0.85 -1.0
689,148 - MPMX19_05185 0.85 +0.3
689,148 - MPMX19_05185 0.85 +0.3
689,148 - MPMX19_05185 0.85 +0.0
689,148 - MPMX19_05185 0.85 -0.6
689,148 - MPMX19_05185 0.85 +0.6
689,148 - MPMX19_05185 0.85 +0.7
689,148 - MPMX19_05185 0.85 -0.7
689,148 - MPMX19_05185 0.85 -0.4
689,148 - MPMX19_05185 0.85 -0.3
689,159 + MPMX19_05185 0.86 -1.2
689,159 + MPMX19_05185 0.86 -0.6
689,160 - MPMX19_05185 0.86 -0.3
689,393 - -0.5
689,393 - -1.6
689,393 - +0.0
689,393 - -1.9
689,393 - +0.7
689,393 - -2.1
689,443 + -1.2
689,443 + -0.4
689,587 + MPMX19_05186 0.16 +1.7
689,588 - MPMX19_05186 0.16 -0.3
689,588 - MPMX19_05186 0.16 -0.8
689,683 + MPMX19_05186 0.22 +0.6
689,683 + MPMX19_05186 0.22 +0.2
689,683 + MPMX19_05186 0.22 -1.0
689,683 + MPMX19_05186 0.22 -1.1
689,683 + MPMX19_05186 0.22 -0.3
689,683 + MPMX19_05186 0.22 -1.0
689,990 - MPMX19_05186 0.41 -1.4
689,990 - MPMX19_05186 0.41 -1.2
689,990 - MPMX19_05186 0.41 +0.0
689,990 - MPMX19_05186 0.41 -0.1
690,058 + MPMX19_05186 0.45 -0.2
690,058 + MPMX19_05186 0.45 +0.8
690,058 + MPMX19_05186 0.45 -1.6
690,058 + MPMX19_05186 0.45 -1.7
690,071 + MPMX19_05186 0.46 -0.1
690,072 - MPMX19_05186 0.46 -0.2
690,072 - MPMX19_05186 0.46 -0.4

Or see this region's nucleotide sequence