Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05166

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05164 and MPMX19_05165 overlap by 4 nucleotidesMPMX19_05165 and MPMX19_05166 are separated by 52 nucleotidesMPMX19_05166 and MPMX19_05167 are separated by 146 nucleotidesMPMX19_05167 and MPMX19_05168 overlap by 4 nucleotides MPMX19_05164: MPMX19_05164 - putative ABC transporter permease protein, at 664,934 to 665,941 _05164 MPMX19_05165: MPMX19_05165 - putative ABC transporter ATP-binding protein, at 665,938 to 666,732 _05165 MPMX19_05166: MPMX19_05166 - Metal-pseudopaline receptor CntO, at 666,785 to 668,959 _05166 MPMX19_05167: MPMX19_05167 - hypothetical protein, at 669,106 to 669,939 _05167 MPMX19_05168: MPMX19_05168 - Hemin transport system permease protein HmuU, at 669,936 to 670,979 _05168 Position (kb) 666 667 668 669Strain fitness (log2 ratio) -2 -1 0 1 2at 665.810 kb on + strand, within MPMX19_05164at 665.810 kb on + strand, within MPMX19_05164at 665.810 kb on + strand, within MPMX19_05164at 665.811 kb on - strand, within MPMX19_05164at 665.811 kb on - strand, within MPMX19_05164at 665.811 kb on - strand, within MPMX19_05164at 665.937 kb on + strandat 665.937 kb on + strandat 665.937 kb on + strandat 665.938 kb on - strandat 666.181 kb on + strand, within MPMX19_05165at 666.181 kb on + strand, within MPMX19_05165at 666.181 kb on + strand, within MPMX19_05165at 666.182 kb on - strand, within MPMX19_05165at 666.864 kb on + strandat 666.864 kb on + strandat 666.864 kb on + strandat 666.864 kb on + strandat 666.864 kb on + strandat 666.864 kb on + strandat 666.864 kb on + strandat 666.865 kb on - strandat 666.865 kb on - strandat 666.865 kb on - strandat 666.865 kb on - strandat 666.865 kb on - strandat 666.865 kb on - strandat 666.865 kb on - strandat 666.951 kb on + strandat 666.951 kb on + strandat 666.951 kb on + strandat 666.951 kb on + strandat 666.951 kb on + strandat 666.951 kb on + strandat 666.951 kb on + strandat 666.951 kb on + strandat 666.952 kb on - strandat 666.952 kb on - strandat 666.952 kb on - strandat 666.952 kb on - strandat 666.952 kb on - strandat 666.952 kb on - strandat 666.952 kb on - strandat 666.952 kb on - strandat 666.952 kb on - strandat 666.952 kb on - strandat 666.987 kb on + strandat 666.987 kb on + strandat 666.987 kb on + strandat 666.988 kb on - strandat 666.988 kb on - strandat 666.988 kb on - strandat 666.988 kb on - strandat 666.988 kb on - strandat 666.988 kb on - strandat 666.988 kb on - strandat 667.002 kb on + strandat 667.002 kb on + strandat 667.002 kb on + strandat 667.002 kb on + strandat 667.002 kb on + strandat 667.002 kb on + strandat 667.002 kb on + strandat 667.002 kb on + strandat 667.002 kb on + strandat 667.002 kb on + strandat 667.002 kb on + strandat 667.003 kb on - strand, within MPMX19_05166at 667.101 kb on + strand, within MPMX19_05166at 667.101 kb on + strand, within MPMX19_05166at 667.102 kb on - strand, within MPMX19_05166at 667.102 kb on - strand, within MPMX19_05166at 667.102 kb on - strand, within MPMX19_05166at 667.143 kb on + strand, within MPMX19_05166at 667.143 kb on + strand, within MPMX19_05166at 667.143 kb on + strand, within MPMX19_05166at 667.144 kb on - strand, within MPMX19_05166at 667.144 kb on - strand, within MPMX19_05166at 667.144 kb on - strand, within MPMX19_05166at 667.449 kb on + strand, within MPMX19_05166at 667.449 kb on + strand, within MPMX19_05166at 667.449 kb on + strand, within MPMX19_05166at 667.449 kb on + strand, within MPMX19_05166at 667.450 kb on - strand, within MPMX19_05166at 667.450 kb on - strand, within MPMX19_05166at 667.458 kb on + strand, within MPMX19_05166at 667.458 kb on + strand, within MPMX19_05166at 667.459 kb on - strand, within MPMX19_05166at 667.459 kb on - strand, within MPMX19_05166at 667.485 kb on + strand, within MPMX19_05166at 667.486 kb on - strand, within MPMX19_05166at 667.486 kb on - strand, within MPMX19_05166at 667.486 kb on - strand, within MPMX19_05166at 667.486 kb on - strand, within MPMX19_05166at 667.486 kb on - strand, within MPMX19_05166at 667.530 kb on + strand, within MPMX19_05166at 667.530 kb on + strand, within MPMX19_05166at 667.531 kb on - strand, within MPMX19_05166at 667.531 kb on - strand, within MPMX19_05166at 667.531 kb on - strand, within MPMX19_05166at 667.579 kb on - strand, within MPMX19_05166at 667.644 kb on + strand, within MPMX19_05166at 667.744 kb on - strand, within MPMX19_05166at 667.875 kb on + strand, within MPMX19_05166at 667.875 kb on + strand, within MPMX19_05166at 667.875 kb on + strand, within MPMX19_05166at 667.875 kb on + strand, within MPMX19_05166at 667.876 kb on - strand, within MPMX19_05166at 667.876 kb on - strand, within MPMX19_05166at 667.876 kb on - strand, within MPMX19_05166at 667.876 kb on - strand, within MPMX19_05166at 667.887 kb on + strand, within MPMX19_05166at 667.887 kb on + strand, within MPMX19_05166at 667.887 kb on + strand, within MPMX19_05166at 667.887 kb on + strand, within MPMX19_05166at 667.887 kb on + strand, within MPMX19_05166at 667.887 kb on + strand, within MPMX19_05166at 667.888 kb on - strand, within MPMX19_05166at 667.888 kb on - strand, within MPMX19_05166at 667.888 kb on - strand, within MPMX19_05166at 667.888 kb on - strand, within MPMX19_05166at 667.888 kb on - strand, within MPMX19_05166at 667.888 kb on - strand, within MPMX19_05166at 667.888 kb on - strand, within MPMX19_05166at 667.888 kb on - strand, within MPMX19_05166at 667.888 kb on - strand, within MPMX19_05166at 667.888 kb on - strand, within MPMX19_05166at 667.888 kb on - strand, within MPMX19_05166at 667.929 kb on + strand, within MPMX19_05166at 667.929 kb on + strand, within MPMX19_05166at 667.929 kb on + strand, within MPMX19_05166at 667.929 kb on + strand, within MPMX19_05166at 667.930 kb on - strand, within MPMX19_05166at 667.930 kb on - strand, within MPMX19_05166at 667.930 kb on - strand, within MPMX19_05166at 667.930 kb on - strand, within MPMX19_05166at 667.930 kb on - strand, within MPMX19_05166at 667.930 kb on - strand, within MPMX19_05166at 667.930 kb on - strand, within MPMX19_05166at 667.930 kb on - strand, within MPMX19_05166at 667.930 kb on - strand, within MPMX19_05166at 667.971 kb on + strand, within MPMX19_05166at 668.127 kb on + strand, within MPMX19_05166at 668.127 kb on + strand, within MPMX19_05166at 668.128 kb on - strand, within MPMX19_05166at 668.128 kb on - strand, within MPMX19_05166at 668.152 kb on - strand, within MPMX19_05166at 668.152 kb on - strand, within MPMX19_05166at 668.281 kb on - strand, within MPMX19_05166at 668.430 kb on + strand, within MPMX19_05166at 668.431 kb on - strand, within MPMX19_05166at 668.431 kb on - strand, within MPMX19_05166at 668.517 kb on + strand, within MPMX19_05166at 668.517 kb on + strand, within MPMX19_05166at 668.517 kb on + strand, within MPMX19_05166at 668.517 kb on + strand, within MPMX19_05166at 668.517 kb on + strand, within MPMX19_05166at 668.517 kb on + strand, within MPMX19_05166at 668.517 kb on + strand, within MPMX19_05166at 668.518 kb on - strand, within MPMX19_05166at 668.518 kb on - strand, within MPMX19_05166at 668.518 kb on - strand, within MPMX19_05166at 668.518 kb on - strand, within MPMX19_05166at 668.518 kb on - strand, within MPMX19_05166at 668.518 kb on - strand, within MPMX19_05166at 668.518 kb on - strand, within MPMX19_05166at 668.535 kb on + strand, within MPMX19_05166at 668.535 kb on + strand, within MPMX19_05166at 668.536 kb on - strand, within MPMX19_05166at 668.693 kb on + strand, within MPMX19_05166at 668.694 kb on - strand, within MPMX19_05166at 668.694 kb on - strand, within MPMX19_05166at 668.694 kb on - strand, within MPMX19_05166at 668.694 kb on - strand, within MPMX19_05166at 668.946 kb on + strandat 669.236 kb on + strand, within MPMX19_05167at 669.237 kb on - strand, within MPMX19_05167at 669.287 kb on + strand, within MPMX19_05167at 669.287 kb on + strand, within MPMX19_05167at 669.287 kb on + strand, within MPMX19_05167at 669.287 kb on + strand, within MPMX19_05167at 669.374 kb on + strand, within MPMX19_05167at 669.374 kb on + strand, within MPMX19_05167at 669.374 kb on + strand, within MPMX19_05167at 669.375 kb on - strand, within MPMX19_05167at 669.375 kb on - strand, within MPMX19_05167at 669.375 kb on - strand, within MPMX19_05167at 669.375 kb on - strand, within MPMX19_05167at 669.891 kb on - strandat 669.891 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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665,810 + MPMX19_05164 0.87 -1.3
665,810 + MPMX19_05164 0.87 -1.8
665,810 + MPMX19_05164 0.87 -0.6
665,811 - MPMX19_05164 0.87 +0.8
665,811 - MPMX19_05164 0.87 -1.5
665,811 - MPMX19_05164 0.87 +0.5
665,937 + +0.0
665,937 + -1.6
665,937 + -1.1
665,938 - +1.0
666,181 + MPMX19_05165 0.31 +0.0
666,181 + MPMX19_05165 0.31 +0.6
666,181 + MPMX19_05165 0.31 +2.0
666,182 - MPMX19_05165 0.31 -0.3
666,864 + +1.0
666,864 + -0.3
666,864 + +1.2
666,864 + -0.3
666,864 + +0.4
666,864 + -0.5
666,864 + +1.7
666,865 - +1.0
666,865 - -0.4
666,865 - +0.0
666,865 - -0.9
666,865 - -0.7
666,865 - -1.9
666,865 - -2.4
666,951 + -1.0
666,951 + -0.1
666,951 + +0.0
666,951 + -1.0
666,951 + +0.7
666,951 + +0.0
666,951 + -0.3
666,951 + +0.7
666,952 - -0.5
666,952 - -1.4
666,952 - -1.3
666,952 - +1.4
666,952 - -0.2
666,952 - +0.6
666,952 - -1.4
666,952 - +0.1
666,952 - -1.1
666,952 - -1.9
666,987 + +0.1
666,987 + -1.1
666,987 + -0.5
666,988 - +1.4
666,988 - -0.8
666,988 - -1.5
666,988 - -1.6
666,988 - -0.9
666,988 - -0.8
666,988 - -0.3
667,002 + -0.3
667,002 + -0.9
667,002 + -2.1
667,002 + -1.1
667,002 + +0.4
667,002 + -0.2
667,002 + -0.6
667,002 + -0.1
667,002 + +0.6
667,002 + -1.3
667,002 + +0.0
667,003 - MPMX19_05166 0.10 -0.3
667,101 + MPMX19_05166 0.15 -1.1
667,101 + MPMX19_05166 0.15 -1.6
667,102 - MPMX19_05166 0.15 -0.1
667,102 - MPMX19_05166 0.15 +0.8
667,102 - MPMX19_05166 0.15 -1.1
667,143 + MPMX19_05166 0.16 +2.0
667,143 + MPMX19_05166 0.16 +1.4
667,143 + MPMX19_05166 0.16 -0.9
667,144 - MPMX19_05166 0.17 -2.5
667,144 - MPMX19_05166 0.17 -1.8
667,144 - MPMX19_05166 0.17 -1.4
667,449 + MPMX19_05166 0.31 -0.8
667,449 + MPMX19_05166 0.31 -0.6
667,449 + MPMX19_05166 0.31 -1.0
667,449 + MPMX19_05166 0.31 -1.1
667,450 - MPMX19_05166 0.31 -1.1
667,450 - MPMX19_05166 0.31 -0.3
667,458 + MPMX19_05166 0.31 -0.6
667,458 + MPMX19_05166 0.31 -0.1
667,459 - MPMX19_05166 0.31 -0.2
667,459 - MPMX19_05166 0.31 -0.9
667,485 + MPMX19_05166 0.32 -1.2
667,486 - MPMX19_05166 0.32 +0.9
667,486 - MPMX19_05166 0.32 -1.3
667,486 - MPMX19_05166 0.32 +0.4
667,486 - MPMX19_05166 0.32 -0.8
667,486 - MPMX19_05166 0.32 -1.6
667,530 + MPMX19_05166 0.34 -0.5
667,530 + MPMX19_05166 0.34 -0.4
667,531 - MPMX19_05166 0.34 +0.2
667,531 - MPMX19_05166 0.34 +0.4
667,531 - MPMX19_05166 0.34 +0.4
667,579 - MPMX19_05166 0.37 -0.8
667,644 + MPMX19_05166 0.39 +1.4
667,744 - MPMX19_05166 0.44 -1.3
667,875 + MPMX19_05166 0.50 -0.4
667,875 + MPMX19_05166 0.50 -0.8
667,875 + MPMX19_05166 0.50 -1.4
667,875 + MPMX19_05166 0.50 +0.2
667,876 - MPMX19_05166 0.50 -0.6
667,876 - MPMX19_05166 0.50 -0.3
667,876 - MPMX19_05166 0.50 -0.3
667,876 - MPMX19_05166 0.50 +0.1
667,887 + MPMX19_05166 0.51 +0.6
667,887 + MPMX19_05166 0.51 -1.8
667,887 + MPMX19_05166 0.51 -2.3
667,887 + MPMX19_05166 0.51 -1.3
667,887 + MPMX19_05166 0.51 -0.3
667,887 + MPMX19_05166 0.51 +0.0
667,888 - MPMX19_05166 0.51 -1.1
667,888 - MPMX19_05166 0.51 -0.6
667,888 - MPMX19_05166 0.51 +0.4
667,888 - MPMX19_05166 0.51 +0.7
667,888 - MPMX19_05166 0.51 -0.4
667,888 - MPMX19_05166 0.51 -1.2
667,888 - MPMX19_05166 0.51 +0.7
667,888 - MPMX19_05166 0.51 -0.9
667,888 - MPMX19_05166 0.51 -1.6
667,888 - MPMX19_05166 0.51 -0.4
667,888 - MPMX19_05166 0.51 -0.4
667,929 + MPMX19_05166 0.53 -1.1
667,929 + MPMX19_05166 0.53 -0.5
667,929 + MPMX19_05166 0.53 -2.4
667,929 + MPMX19_05166 0.53 +0.0
667,930 - MPMX19_05166 0.53 +0.4
667,930 - MPMX19_05166 0.53 -1.0
667,930 - MPMX19_05166 0.53 +0.4
667,930 - MPMX19_05166 0.53 -0.1
667,930 - MPMX19_05166 0.53 +0.4
667,930 - MPMX19_05166 0.53 +1.0
667,930 - MPMX19_05166 0.53 -1.9
667,930 - MPMX19_05166 0.53 -1.1
667,930 - MPMX19_05166 0.53 -1.7
667,971 + MPMX19_05166 0.55 -0.5
668,127 + MPMX19_05166 0.62 -1.0
668,127 + MPMX19_05166 0.62 -1.7
668,128 - MPMX19_05166 0.62 -0.8
668,128 - MPMX19_05166 0.62 -0.4
668,152 - MPMX19_05166 0.63 +0.8
668,152 - MPMX19_05166 0.63 -1.5
668,281 - MPMX19_05166 0.69 +0.2
668,430 + MPMX19_05166 0.76 -0.1
668,431 - MPMX19_05166 0.76 -0.8
668,431 - MPMX19_05166 0.76 +0.0
668,517 + MPMX19_05166 0.80 +0.2
668,517 + MPMX19_05166 0.80 +0.2
668,517 + MPMX19_05166 0.80 +0.8
668,517 + MPMX19_05166 0.80 -1.4
668,517 + MPMX19_05166 0.80 -1.9
668,517 + MPMX19_05166 0.80 -1.8
668,517 + MPMX19_05166 0.80 -1.6
668,518 - MPMX19_05166 0.80 -0.1
668,518 - MPMX19_05166 0.80 +0.2
668,518 - MPMX19_05166 0.80 -0.1
668,518 - MPMX19_05166 0.80 -0.8
668,518 - MPMX19_05166 0.80 +0.2
668,518 - MPMX19_05166 0.80 -0.6
668,518 - MPMX19_05166 0.80 -1.3
668,535 + MPMX19_05166 0.80 +0.0
668,535 + MPMX19_05166 0.80 -2.1
668,536 - MPMX19_05166 0.81 -2.2
668,693 + MPMX19_05166 0.88 +0.1
668,694 - MPMX19_05166 0.88 -2.1
668,694 - MPMX19_05166 0.88 -0.4
668,694 - MPMX19_05166 0.88 -1.3
668,694 - MPMX19_05166 0.88 -1.0
668,946 + +0.7
669,236 + MPMX19_05167 0.16 -1.8
669,237 - MPMX19_05167 0.16 -0.3
669,287 + MPMX19_05167 0.22 -1.2
669,287 + MPMX19_05167 0.22 -1.4
669,287 + MPMX19_05167 0.22 -1.6
669,287 + MPMX19_05167 0.22 -1.9
669,374 + MPMX19_05167 0.32 -1.8
669,374 + MPMX19_05167 0.32 -2.6
669,374 + MPMX19_05167 0.32 +0.4
669,375 - MPMX19_05167 0.32 -1.4
669,375 - MPMX19_05167 0.32 -0.4
669,375 - MPMX19_05167 0.32 -0.3
669,375 - MPMX19_05167 0.32 +0.6
669,891 - +0.6
669,891 - +1.2

Or see this region's nucleotide sequence