Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05158

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05157 and MPMX19_05158 are separated by 98 nucleotidesMPMX19_05158 and MPMX19_05159 are separated by 29 nucleotides MPMX19_05157: MPMX19_05157 - hypothetical protein, at 655,860 to 656,849 _05157 MPMX19_05158: MPMX19_05158 - Adaptive-response sensory-kinase SasA, at 656,948 to 658,513 _05158 MPMX19_05159: MPMX19_05159 - hypothetical protein, at 658,543 to 660,822 _05159 Position (kb) 656 657 658 659Strain fitness (log2 ratio) -3 -2 -1 0 1at 656.098 kb on - strand, within MPMX19_05157at 656.253 kb on + strand, within MPMX19_05157at 656.254 kb on - strand, within MPMX19_05157at 656.640 kb on + strand, within MPMX19_05157at 656.640 kb on + strand, within MPMX19_05157at 656.641 kb on - strand, within MPMX19_05157at 656.641 kb on - strand, within MPMX19_05157at 656.641 kb on - strand, within MPMX19_05157at 656.641 kb on - strand, within MPMX19_05157at 656.641 kb on - strand, within MPMX19_05157at 656.641 kb on - strand, within MPMX19_05157at 656.641 kb on - strand, within MPMX19_05157at 656.641 kb on - strand, within MPMX19_05157at 656.641 kb on - strand, within MPMX19_05157at 656.691 kb on + strand, within MPMX19_05157at 656.692 kb on - strand, within MPMX19_05157at 656.692 kb on - strand, within MPMX19_05157at 656.692 kb on - strand, within MPMX19_05157at 657.329 kb on + strand, within MPMX19_05158at 657.329 kb on + strand, within MPMX19_05158at 657.330 kb on - strand, within MPMX19_05158at 657.330 kb on - strand, within MPMX19_05158at 657.479 kb on - strand, within MPMX19_05158at 657.479 kb on - strand, within MPMX19_05158at 657.626 kb on - strand, within MPMX19_05158at 657.626 kb on - strand, within MPMX19_05158at 657.636 kb on + strand, within MPMX19_05158at 657.636 kb on + strand, within MPMX19_05158at 657.636 kb on + strand, within MPMX19_05158at 657.636 kb on + strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.884 kb on + strand, within MPMX19_05158at 657.884 kb on + strand, within MPMX19_05158at 657.884 kb on + strand, within MPMX19_05158at 657.884 kb on + strand, within MPMX19_05158at 658.055 kb on + strand, within MPMX19_05158at 658.055 kb on + strand, within MPMX19_05158at 658.055 kb on + strand, within MPMX19_05158at 658.056 kb on - strand, within MPMX19_05158at 658.315 kb on + strand, within MPMX19_05158at 658.357 kb on + strandat 658.357 kb on + strandat 658.357 kb on + strandat 658.364 kb on + strandat 658.364 kb on + strandat 658.364 kb on + strandat 658.365 kb on - strandat 658.550 kb on - strandat 658.625 kb on + strandat 658.625 kb on + strandat 658.626 kb on - strandat 658.631 kb on + strandat 658.631 kb on + strandat 658.631 kb on + strandat 658.631 kb on + strandat 658.631 kb on + strandat 658.631 kb on + strandat 658.631 kb on + strandat 658.631 kb on + strandat 658.631 kb on + strandat 658.631 kb on + strandat 658.631 kb on + strandat 658.631 kb on + strandat 658.632 kb on - strandat 658.632 kb on - strandat 658.632 kb on - strandat 658.632 kb on - strandat 658.850 kb on + strand, within MPMX19_05159at 658.850 kb on + strand, within MPMX19_05159at 658.850 kb on + strand, within MPMX19_05159at 658.851 kb on - strand, within MPMX19_05159at 658.851 kb on - strand, within MPMX19_05159at 659.146 kb on - strand, within MPMX19_05159at 659.273 kb on + strand, within MPMX19_05159at 659.274 kb on - strand, within MPMX19_05159at 659.274 kb on - strand, within MPMX19_05159at 659.274 kb on - strand, within MPMX19_05159at 659.471 kb on + strand, within MPMX19_05159at 659.471 kb on + strand, within MPMX19_05159at 659.471 kb on + strand, within MPMX19_05159at 659.471 kb on + strand, within MPMX19_05159at 659.471 kb on + strand, within MPMX19_05159at 659.472 kb on - strand, within MPMX19_05159at 659.472 kb on - strand, within MPMX19_05159at 659.472 kb on - strand, within MPMX19_05159at 659.472 kb on - strand, within MPMX19_05159at 659.472 kb on - strand, within MPMX19_05159

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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656,098 - MPMX19_05157 0.24 -1.1
656,253 + MPMX19_05157 0.40 -0.7
656,254 - MPMX19_05157 0.40 -0.5
656,640 + MPMX19_05157 0.79 -0.6
656,640 + MPMX19_05157 0.79 +1.4
656,641 - MPMX19_05157 0.79 -1.0
656,641 - MPMX19_05157 0.79 +0.3
656,641 - MPMX19_05157 0.79 -0.8
656,641 - MPMX19_05157 0.79 -1.3
656,641 - MPMX19_05157 0.79 +0.0
656,641 - MPMX19_05157 0.79 -1.4
656,641 - MPMX19_05157 0.79 +0.0
656,641 - MPMX19_05157 0.79 -0.7
656,641 - MPMX19_05157 0.79 -1.2
656,691 + MPMX19_05157 0.84 +0.1
656,692 - MPMX19_05157 0.84 +0.1
656,692 - MPMX19_05157 0.84 +0.0
656,692 - MPMX19_05157 0.84 -0.1
657,329 + MPMX19_05158 0.24 -1.9
657,329 + MPMX19_05158 0.24 -2.8
657,330 - MPMX19_05158 0.24 +1.0
657,330 - MPMX19_05158 0.24 +0.6
657,479 - MPMX19_05158 0.34 -0.1
657,479 - MPMX19_05158 0.34 -0.5
657,626 - MPMX19_05158 0.43 +1.0
657,626 - MPMX19_05158 0.43 +0.4
657,636 + MPMX19_05158 0.44 -1.1
657,636 + MPMX19_05158 0.44 +1.0
657,636 + MPMX19_05158 0.44 -0.4
657,636 + MPMX19_05158 0.44 -0.8
657,637 - MPMX19_05158 0.44 +0.0
657,637 - MPMX19_05158 0.44 -1.3
657,637 - MPMX19_05158 0.44 -0.1
657,637 - MPMX19_05158 0.44 -1.2
657,637 - MPMX19_05158 0.44 -0.2
657,637 - MPMX19_05158 0.44 +0.0
657,637 - MPMX19_05158 0.44 +1.2
657,637 - MPMX19_05158 0.44 -0.1
657,637 - MPMX19_05158 0.44 -0.6
657,637 - MPMX19_05158 0.44 -0.8
657,637 - MPMX19_05158 0.44 +0.4
657,637 - MPMX19_05158 0.44 -1.8
657,884 + MPMX19_05158 0.60 -0.3
657,884 + MPMX19_05158 0.60 +0.2
657,884 + MPMX19_05158 0.60 +0.4
657,884 + MPMX19_05158 0.60 -0.1
658,055 + MPMX19_05158 0.71 -1.5
658,055 + MPMX19_05158 0.71 -1.1
658,055 + MPMX19_05158 0.71 -1.8
658,056 - MPMX19_05158 0.71 +1.0
658,315 + MPMX19_05158 0.87 -2.1
658,357 + +0.0
658,357 + +0.0
658,357 + -0.9
658,364 + +0.7
658,364 + -1.0
658,364 + -0.4
658,365 - -1.0
658,550 - +1.0
658,625 + +0.7
658,625 + -1.1
658,626 - -1.0
658,631 + -0.3
658,631 + -0.7
658,631 + +0.4
658,631 + -1.0
658,631 + +0.4
658,631 + -0.8
658,631 + -0.0
658,631 + -1.2
658,631 + -1.4
658,631 + +0.6
658,631 + -0.9
658,631 + -1.7
658,632 - +0.4
658,632 - +1.4
658,632 - +1.4
658,632 - -0.6
658,850 + MPMX19_05159 0.13 +0.2
658,850 + MPMX19_05159 0.13 -2.1
658,850 + MPMX19_05159 0.13 +0.9
658,851 - MPMX19_05159 0.14 -0.3
658,851 - MPMX19_05159 0.14 -1.8
659,146 - MPMX19_05159 0.26 +0.3
659,273 + MPMX19_05159 0.32 -2.7
659,274 - MPMX19_05159 0.32 -2.4
659,274 - MPMX19_05159 0.32 -1.6
659,274 - MPMX19_05159 0.32 -0.1
659,471 + MPMX19_05159 0.41 -1.9
659,471 + MPMX19_05159 0.41 -1.1
659,471 + MPMX19_05159 0.41 -1.8
659,471 + MPMX19_05159 0.41 +0.0
659,471 + MPMX19_05159 0.41 -1.2
659,472 - MPMX19_05159 0.41 +0.6
659,472 - MPMX19_05159 0.41 -0.7
659,472 - MPMX19_05159 0.41 -0.8
659,472 - MPMX19_05159 0.41 +0.4
659,472 - MPMX19_05159 0.41 -0.1

Or see this region's nucleotide sequence