Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05151

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05150 and MPMX19_05151 are separated by 105 nucleotidesMPMX19_05151 and MPMX19_05152 are separated by 29 nucleotidesMPMX19_05152 and MPMX19_05153 are separated by 32 nucleotides MPMX19_05150: MPMX19_05150 - HTH-type transcriptional activator CmpR, at 647,154 to 648,140 _05150 MPMX19_05151: MPMX19_05151 - 2-aminoethylphosphonate--pyruvate transaminase, at 648,246 to 649,364 _05151 MPMX19_05152: MPMX19_05152 - Phosphonoacetaldehyde hydrolase, at 649,394 to 650,224 _05152 MPMX19_05153: MPMX19_05153 - 4-methylaminobutanoate oxidase (formaldehyde-forming), at 650,257 to 651,483 _05153 Position (kb) 648 649 650Strain fitness (log2 ratio) -2 -1 0 1 2at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 648.004 kb on + strand, within MPMX19_05150at 648.004 kb on + strand, within MPMX19_05150at 648.004 kb on + strand, within MPMX19_05150at 648.004 kb on + strand, within MPMX19_05150at 648.004 kb on + strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.143 kb on - strandat 648.143 kb on - strandat 648.152 kb on + strandat 648.152 kb on + strandat 648.152 kb on + strandat 648.153 kb on - strandat 648.172 kb on + strandat 648.172 kb on + strandat 648.177 kb on + strandat 648.264 kb on + strandat 648.264 kb on + strandat 648.265 kb on - strandat 648.265 kb on - strandat 648.519 kb on + strand, within MPMX19_05151at 648.519 kb on + strand, within MPMX19_05151at 648.520 kb on - strand, within MPMX19_05151at 648.520 kb on - strand, within MPMX19_05151at 649.194 kb on + strand, within MPMX19_05151at 649.194 kb on + strand, within MPMX19_05151at 649.194 kb on + strand, within MPMX19_05151at 649.194 kb on + strand, within MPMX19_05151at 649.194 kb on + strand, within MPMX19_05151at 649.195 kb on - strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.228 kb on - strand, within MPMX19_05151at 649.406 kb on + strandat 649.407 kb on - strandat 649.419 kb on - strandat 649.419 kb on - strandat 649.419 kb on - strandat 649.419 kb on - strandat 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.674 kb on - strand, within MPMX19_05152at 649.674 kb on - strand, within MPMX19_05152at 649.674 kb on - strand, within MPMX19_05152at 649.848 kb on - strand, within MPMX19_05152at 650.144 kb on + strandat 650.144 kb on + strandat 650.144 kb on + strandat 650.144 kb on + strandat 650.144 kb on + strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
647,338 + MPMX19_05150 0.19 -1.0
647,338 + MPMX19_05150 0.19 +1.3
647,338 + MPMX19_05150 0.19 -1.0
647,338 + MPMX19_05150 0.19 +0.1
647,338 + MPMX19_05150 0.19 -1.0
647,338 + MPMX19_05150 0.19 -1.9
647,338 + MPMX19_05150 0.19 -0.5
647,338 + MPMX19_05150 0.19 +0.1
647,338 + MPMX19_05150 0.19 +0.2
647,338 + MPMX19_05150 0.19 +1.6
647,338 + MPMX19_05150 0.19 -1.3
647,338 + MPMX19_05150 0.19 +1.8
647,338 + MPMX19_05150 0.19 -0.3
647,339 - MPMX19_05150 0.19 -1.0
647,339 - MPMX19_05150 0.19 +0.6
647,339 - MPMX19_05150 0.19 +0.2
647,339 - MPMX19_05150 0.19 -0.9
647,339 - MPMX19_05150 0.19 +0.7
647,339 - MPMX19_05150 0.19 -0.4
647,339 - MPMX19_05150 0.19 +0.0
647,339 - MPMX19_05150 0.19 -0.7
647,339 - MPMX19_05150 0.19 +0.6
647,674 + MPMX19_05150 0.53 -0.9
647,674 + MPMX19_05150 0.53 -2.1
647,674 + MPMX19_05150 0.53 -1.2
647,674 + MPMX19_05150 0.53 +2.6
647,674 + MPMX19_05150 0.53 +0.0
647,674 + MPMX19_05150 0.53 -0.1
647,674 + MPMX19_05150 0.53 -1.7
647,674 + MPMX19_05150 0.53 +0.4
647,674 + MPMX19_05150 0.53 +0.3
647,674 + MPMX19_05150 0.53 +1.5
647,675 - MPMX19_05150 0.53 -0.9
647,675 - MPMX19_05150 0.53 +1.5
647,675 - MPMX19_05150 0.53 -1.5
647,675 - MPMX19_05150 0.53 -0.6
647,675 - MPMX19_05150 0.53 -0.9
647,675 - MPMX19_05150 0.53 -0.3
647,675 - MPMX19_05150 0.53 -0.8
647,675 - MPMX19_05150 0.53 -2.0
647,675 - MPMX19_05150 0.53 +0.4
647,675 - MPMX19_05150 0.53 -0.8
647,675 - MPMX19_05150 0.53 -1.1
648,004 + MPMX19_05150 0.86 -0.1
648,004 + MPMX19_05150 0.86 +0.2
648,004 + MPMX19_05150 0.86 -1.0
648,004 + MPMX19_05150 0.86 -0.8
648,004 + MPMX19_05150 0.86 -1.1
648,005 - MPMX19_05150 0.86 -0.2
648,005 - MPMX19_05150 0.86 +0.6
648,005 - MPMX19_05150 0.86 -1.1
648,005 - MPMX19_05150 0.86 -0.6
648,005 - MPMX19_05150 0.86 -0.1
648,005 - MPMX19_05150 0.86 +1.2
648,005 - MPMX19_05150 0.86 -0.4
648,005 - MPMX19_05150 0.86 -2.0
648,143 - -0.8
648,143 - -0.2
648,152 + -1.0
648,152 + -1.3
648,152 + -0.9
648,153 - -1.4
648,172 + -1.3
648,172 + -1.7
648,177 + -1.5
648,264 + +0.2
648,264 + -1.1
648,265 - -1.1
648,265 - +0.8
648,519 + MPMX19_05151 0.24 -1.7
648,519 + MPMX19_05151 0.24 -0.3
648,520 - MPMX19_05151 0.24 -1.5
648,520 - MPMX19_05151 0.24 -0.4
649,194 + MPMX19_05151 0.85 -1.1
649,194 + MPMX19_05151 0.85 +0.2
649,194 + MPMX19_05151 0.85 -0.1
649,194 + MPMX19_05151 0.85 +0.2
649,194 + MPMX19_05151 0.85 +0.7
649,195 - MPMX19_05151 0.85 -0.7
649,227 + MPMX19_05151 0.88 -0.4
649,227 + MPMX19_05151 0.88 -1.3
649,227 + MPMX19_05151 0.88 -1.2
649,227 + MPMX19_05151 0.88 +0.3
649,227 + MPMX19_05151 0.88 +1.0
649,227 + MPMX19_05151 0.88 -0.5
649,227 + MPMX19_05151 0.88 +0.2
649,228 - MPMX19_05151 0.88 +0.1
649,406 + -1.0
649,407 - -0.1
649,419 - +0.0
649,419 - +0.3
649,419 - -1.1
649,419 - -0.9
649,673 + MPMX19_05152 0.34 -0.1
649,673 + MPMX19_05152 0.34 +1.0
649,673 + MPMX19_05152 0.34 +1.2
649,673 + MPMX19_05152 0.34 -1.0
649,673 + MPMX19_05152 0.34 +0.2
649,673 + MPMX19_05152 0.34 -1.1
649,674 - MPMX19_05152 0.34 +0.6
649,674 - MPMX19_05152 0.34 +0.0
649,674 - MPMX19_05152 0.34 +0.0
649,848 - MPMX19_05152 0.55 +0.3
650,144 + -0.1
650,144 + -1.3
650,144 + +0.7
650,144 + +1.5
650,144 + -1.8
650,145 - -1.7
650,145 - -0.9
650,145 - -0.6
650,145 - -0.6
650,145 - +0.3
650,145 - -0.8
650,145 - -1.2
650,145 - -1.7

Or see this region's nucleotide sequence