Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05150

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05149 and MPMX19_05150 overlap by 83 nucleotidesMPMX19_05150 and MPMX19_05151 are separated by 105 nucleotides MPMX19_05149: MPMX19_05149 - hypothetical protein, at 645,512 to 647,236 _05149 MPMX19_05150: MPMX19_05150 - HTH-type transcriptional activator CmpR, at 647,154 to 648,140 _05150 MPMX19_05151: MPMX19_05151 - 2-aminoethylphosphonate--pyruvate transaminase, at 648,246 to 649,364 _05151 Position (kb) 647 648 649Strain fitness (log2 ratio) -2 -1 0 1 2at 646.262 kb on + strand, within MPMX19_05149at 646.262 kb on + strand, within MPMX19_05149at 646.262 kb on + strand, within MPMX19_05149at 646.262 kb on + strand, within MPMX19_05149at 646.262 kb on + strand, within MPMX19_05149at 646.262 kb on + strand, within MPMX19_05149at 646.262 kb on + strand, within MPMX19_05149at 646.262 kb on + strand, within MPMX19_05149at 646.262 kb on + strand, within MPMX19_05149at 646.262 kb on + strand, within MPMX19_05149at 646.262 kb on + strand, within MPMX19_05149at 646.262 kb on + strand, within MPMX19_05149at 646.263 kb on - strand, within MPMX19_05149at 646.263 kb on - strand, within MPMX19_05149at 646.263 kb on - strand, within MPMX19_05149at 646.263 kb on - strand, within MPMX19_05149at 646.263 kb on - strand, within MPMX19_05149at 646.263 kb on - strand, within MPMX19_05149at 646.263 kb on - strand, within MPMX19_05149at 646.263 kb on - strand, within MPMX19_05149at 646.264 kb on + strand, within MPMX19_05149at 646.264 kb on + strand, within MPMX19_05149at 646.264 kb on + strand, within MPMX19_05149at 646.264 kb on + strand, within MPMX19_05149at 646.264 kb on + strand, within MPMX19_05149at 646.264 kb on + strand, within MPMX19_05149at 646.264 kb on + strand, within MPMX19_05149at 646.265 kb on - strand, within MPMX19_05149at 646.265 kb on - strand, within MPMX19_05149at 646.265 kb on - strand, within MPMX19_05149at 646.265 kb on - strand, within MPMX19_05149at 646.265 kb on - strand, within MPMX19_05149at 646.265 kb on - strand, within MPMX19_05149at 646.529 kb on + strand, within MPMX19_05149at 646.529 kb on + strand, within MPMX19_05149at 646.530 kb on - strand, within MPMX19_05149at 646.556 kb on + strand, within MPMX19_05149at 646.556 kb on + strand, within MPMX19_05149at 646.557 kb on - strand, within MPMX19_05149at 646.557 kb on - strand, within MPMX19_05149at 646.557 kb on - strand, within MPMX19_05149at 646.595 kb on + strand, within MPMX19_05149at 646.595 kb on + strand, within MPMX19_05149at 646.595 kb on + strand, within MPMX19_05149at 646.766 kb on + strand, within MPMX19_05149at 646.766 kb on + strand, within MPMX19_05149at 646.766 kb on + strand, within MPMX19_05149at 646.766 kb on + strand, within MPMX19_05149at 646.766 kb on + strand, within MPMX19_05149at 646.766 kb on + strand, within MPMX19_05149at 646.766 kb on + strand, within MPMX19_05149at 646.766 kb on + strand, within MPMX19_05149at 646.767 kb on - strand, within MPMX19_05149at 646.767 kb on - strand, within MPMX19_05149at 646.767 kb on - strand, within MPMX19_05149at 646.767 kb on - strand, within MPMX19_05149at 646.767 kb on - strand, within MPMX19_05149at 646.767 kb on - strand, within MPMX19_05149at 646.767 kb on - strand, within MPMX19_05149at 646.767 kb on - strand, within MPMX19_05149at 646.767 kb on - strand, within MPMX19_05149at 646.767 kb on - strand, within MPMX19_05149at 646.767 kb on - strand, within MPMX19_05149at 646.767 kb on - strand, within MPMX19_05149at 646.767 kb on - strand, within MPMX19_05149at 646.767 kb on - strand, within MPMX19_05149at 646.767 kb on - strand, within MPMX19_05149at 646.811 kb on + strand, within MPMX19_05149at 646.812 kb on - strand, within MPMX19_05149at 646.812 kb on - strand, within MPMX19_05149at 646.812 kb on - strand, within MPMX19_05149at 646.856 kb on + strand, within MPMX19_05149at 646.856 kb on + strand, within MPMX19_05149at 646.856 kb on + strand, within MPMX19_05149at 646.856 kb on + strand, within MPMX19_05149at 646.856 kb on + strand, within MPMX19_05149at 646.856 kb on + strand, within MPMX19_05149at 646.856 kb on + strand, within MPMX19_05149at 646.857 kb on - strand, within MPMX19_05149at 647.009 kb on + strand, within MPMX19_05149at 647.009 kb on + strand, within MPMX19_05149at 647.009 kb on + strand, within MPMX19_05149at 647.009 kb on + strand, within MPMX19_05149at 647.009 kb on + strand, within MPMX19_05149at 647.009 kb on + strand, within MPMX19_05149at 647.009 kb on + strand, within MPMX19_05149at 647.010 kb on - strand, within MPMX19_05149at 647.010 kb on - strand, within MPMX19_05149at 647.010 kb on - strand, within MPMX19_05149at 647.010 kb on - strand, within MPMX19_05149at 647.010 kb on - strand, within MPMX19_05149at 647.010 kb on - strand, within MPMX19_05149at 647.010 kb on - strand, within MPMX19_05149at 647.010 kb on - strand, within MPMX19_05149at 647.057 kb on + strand, within MPMX19_05149at 647.057 kb on + strand, within MPMX19_05149at 647.057 kb on + strand, within MPMX19_05149at 647.058 kb on - strand, within MPMX19_05149at 647.058 kb on - strand, within MPMX19_05149at 647.058 kb on - strand, within MPMX19_05149at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 648.004 kb on + strand, within MPMX19_05150at 648.004 kb on + strand, within MPMX19_05150at 648.004 kb on + strand, within MPMX19_05150at 648.004 kb on + strand, within MPMX19_05150at 648.004 kb on + strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.143 kb on - strandat 648.143 kb on - strandat 648.152 kb on + strandat 648.152 kb on + strandat 648.152 kb on + strandat 648.153 kb on - strandat 648.172 kb on + strandat 648.172 kb on + strandat 648.177 kb on + strandat 648.264 kb on + strandat 648.264 kb on + strandat 648.265 kb on - strandat 648.265 kb on - strandat 648.519 kb on + strand, within MPMX19_05151at 648.519 kb on + strand, within MPMX19_05151at 648.520 kb on - strand, within MPMX19_05151at 648.520 kb on - strand, within MPMX19_05151

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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646,262 + MPMX19_05149 0.43 +0.8
646,262 + MPMX19_05149 0.43 +0.0
646,262 + MPMX19_05149 0.43 -0.4
646,262 + MPMX19_05149 0.43 -0.9
646,262 + MPMX19_05149 0.43 +0.0
646,262 + MPMX19_05149 0.43 +0.0
646,262 + MPMX19_05149 0.43 -0.9
646,262 + MPMX19_05149 0.43 -0.1
646,262 + MPMX19_05149 0.43 -0.2
646,262 + MPMX19_05149 0.43 -0.8
646,262 + MPMX19_05149 0.43 -1.3
646,262 + MPMX19_05149 0.43 -0.3
646,263 - MPMX19_05149 0.44 -0.7
646,263 - MPMX19_05149 0.44 +0.2
646,263 - MPMX19_05149 0.44 +0.0
646,263 - MPMX19_05149 0.44 -0.4
646,263 - MPMX19_05149 0.44 -0.4
646,263 - MPMX19_05149 0.44 -0.8
646,263 - MPMX19_05149 0.44 +0.0
646,263 - MPMX19_05149 0.44 -1.5
646,264 + MPMX19_05149 0.44 -0.5
646,264 + MPMX19_05149 0.44 +1.0
646,264 + MPMX19_05149 0.44 -1.5
646,264 + MPMX19_05149 0.44 -1.4
646,264 + MPMX19_05149 0.44 -1.3
646,264 + MPMX19_05149 0.44 +1.3
646,264 + MPMX19_05149 0.44 -1.2
646,265 - MPMX19_05149 0.44 +0.0
646,265 - MPMX19_05149 0.44 -1.5
646,265 - MPMX19_05149 0.44 -1.1
646,265 - MPMX19_05149 0.44 -0.4
646,265 - MPMX19_05149 0.44 -0.1
646,265 - MPMX19_05149 0.44 -0.7
646,529 + MPMX19_05149 0.59 -0.6
646,529 + MPMX19_05149 0.59 +1.0
646,530 - MPMX19_05149 0.59 -1.0
646,556 + MPMX19_05149 0.61 -0.3
646,556 + MPMX19_05149 0.61 -0.1
646,557 - MPMX19_05149 0.61 +0.3
646,557 - MPMX19_05149 0.61 -1.4
646,557 - MPMX19_05149 0.61 -1.0
646,595 + MPMX19_05149 0.63 +1.2
646,595 + MPMX19_05149 0.63 -0.8
646,595 + MPMX19_05149 0.63 +0.5
646,766 + MPMX19_05149 0.73 -1.5
646,766 + MPMX19_05149 0.73 -0.3
646,766 + MPMX19_05149 0.73 -0.2
646,766 + MPMX19_05149 0.73 -0.4
646,766 + MPMX19_05149 0.73 +0.0
646,766 + MPMX19_05149 0.73 +0.2
646,766 + MPMX19_05149 0.73 +1.5
646,766 + MPMX19_05149 0.73 -2.0
646,767 - MPMX19_05149 0.73 +0.5
646,767 - MPMX19_05149 0.73 -1.1
646,767 - MPMX19_05149 0.73 -0.4
646,767 - MPMX19_05149 0.73 +0.0
646,767 - MPMX19_05149 0.73 -0.2
646,767 - MPMX19_05149 0.73 +0.0
646,767 - MPMX19_05149 0.73 -0.5
646,767 - MPMX19_05149 0.73 -1.1
646,767 - MPMX19_05149 0.73 -0.1
646,767 - MPMX19_05149 0.73 +0.5
646,767 - MPMX19_05149 0.73 +0.4
646,767 - MPMX19_05149 0.73 +1.5
646,767 - MPMX19_05149 0.73 -1.2
646,767 - MPMX19_05149 0.73 +1.0
646,767 - MPMX19_05149 0.73 -0.4
646,811 + MPMX19_05149 0.75 -0.1
646,812 - MPMX19_05149 0.75 -0.4
646,812 - MPMX19_05149 0.75 +1.0
646,812 - MPMX19_05149 0.75 -1.1
646,856 + MPMX19_05149 0.78 -1.2
646,856 + MPMX19_05149 0.78 +0.8
646,856 + MPMX19_05149 0.78 -1.0
646,856 + MPMX19_05149 0.78 -0.3
646,856 + MPMX19_05149 0.78 -0.5
646,856 + MPMX19_05149 0.78 -0.3
646,856 + MPMX19_05149 0.78 -1.4
646,857 - MPMX19_05149 0.78 +0.0
647,009 + MPMX19_05149 0.87 -0.5
647,009 + MPMX19_05149 0.87 -1.2
647,009 + MPMX19_05149 0.87 -1.3
647,009 + MPMX19_05149 0.87 +0.3
647,009 + MPMX19_05149 0.87 -2.0
647,009 + MPMX19_05149 0.87 -1.6
647,009 + MPMX19_05149 0.87 -0.4
647,010 - MPMX19_05149 0.87 +0.5
647,010 - MPMX19_05149 0.87 +0.5
647,010 - MPMX19_05149 0.87 -1.4
647,010 - MPMX19_05149 0.87 -1.3
647,010 - MPMX19_05149 0.87 -0.8
647,010 - MPMX19_05149 0.87 +1.6
647,010 - MPMX19_05149 0.87 +0.3
647,010 - MPMX19_05149 0.87 -1.5
647,057 + MPMX19_05149 0.90 -0.7
647,057 + MPMX19_05149 0.90 -2.0
647,057 + MPMX19_05149 0.90 -0.1
647,058 - MPMX19_05149 0.90 +0.5
647,058 - MPMX19_05149 0.90 -2.0
647,058 - MPMX19_05149 0.90 -1.0
647,338 + MPMX19_05150 0.19 -1.0
647,338 + MPMX19_05150 0.19 +1.3
647,338 + MPMX19_05150 0.19 -1.0
647,338 + MPMX19_05150 0.19 +0.1
647,338 + MPMX19_05150 0.19 -1.0
647,338 + MPMX19_05150 0.19 -1.9
647,338 + MPMX19_05150 0.19 -0.5
647,338 + MPMX19_05150 0.19 +0.1
647,338 + MPMX19_05150 0.19 +0.2
647,338 + MPMX19_05150 0.19 +1.6
647,338 + MPMX19_05150 0.19 -1.3
647,338 + MPMX19_05150 0.19 +1.8
647,338 + MPMX19_05150 0.19 -0.3
647,339 - MPMX19_05150 0.19 -1.0
647,339 - MPMX19_05150 0.19 +0.6
647,339 - MPMX19_05150 0.19 +0.2
647,339 - MPMX19_05150 0.19 -0.9
647,339 - MPMX19_05150 0.19 +0.7
647,339 - MPMX19_05150 0.19 -0.4
647,339 - MPMX19_05150 0.19 +0.0
647,339 - MPMX19_05150 0.19 -0.7
647,339 - MPMX19_05150 0.19 +0.6
647,674 + MPMX19_05150 0.53 -0.9
647,674 + MPMX19_05150 0.53 -2.1
647,674 + MPMX19_05150 0.53 -1.2
647,674 + MPMX19_05150 0.53 +2.6
647,674 + MPMX19_05150 0.53 +0.0
647,674 + MPMX19_05150 0.53 -0.1
647,674 + MPMX19_05150 0.53 -1.7
647,674 + MPMX19_05150 0.53 +0.4
647,674 + MPMX19_05150 0.53 +0.3
647,674 + MPMX19_05150 0.53 +1.5
647,675 - MPMX19_05150 0.53 -0.9
647,675 - MPMX19_05150 0.53 +1.5
647,675 - MPMX19_05150 0.53 -1.5
647,675 - MPMX19_05150 0.53 -0.6
647,675 - MPMX19_05150 0.53 -0.9
647,675 - MPMX19_05150 0.53 -0.3
647,675 - MPMX19_05150 0.53 -0.8
647,675 - MPMX19_05150 0.53 -2.0
647,675 - MPMX19_05150 0.53 +0.4
647,675 - MPMX19_05150 0.53 -0.8
647,675 - MPMX19_05150 0.53 -1.1
648,004 + MPMX19_05150 0.86 -0.1
648,004 + MPMX19_05150 0.86 +0.2
648,004 + MPMX19_05150 0.86 -1.0
648,004 + MPMX19_05150 0.86 -0.8
648,004 + MPMX19_05150 0.86 -1.1
648,005 - MPMX19_05150 0.86 -0.2
648,005 - MPMX19_05150 0.86 +0.6
648,005 - MPMX19_05150 0.86 -1.1
648,005 - MPMX19_05150 0.86 -0.6
648,005 - MPMX19_05150 0.86 -0.1
648,005 - MPMX19_05150 0.86 +1.2
648,005 - MPMX19_05150 0.86 -0.4
648,005 - MPMX19_05150 0.86 -2.0
648,143 - -0.8
648,143 - -0.2
648,152 + -1.0
648,152 + -1.3
648,152 + -0.9
648,153 - -1.4
648,172 + -1.3
648,172 + -1.7
648,177 + -1.5
648,264 + +0.2
648,264 + -1.1
648,265 - -1.1
648,265 - +0.8
648,519 + MPMX19_05151 0.24 -1.7
648,519 + MPMX19_05151 0.24 -0.3
648,520 - MPMX19_05151 0.24 -1.5
648,520 - MPMX19_05151 0.24 -0.4

Or see this region's nucleotide sequence