Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05115 and MPMX19_05116 are separated by 172 nucleotides MPMX19_05116 and MPMX19_05117 are separated by 266 nucleotides MPMX19_05117 and MPMX19_05118 are separated by 238 nucleotides
MPMX19_05115: MPMX19_05115 - Transcriptional regulatory protein DegU, at 600,585 to 601,235
_05115
MPMX19_05116: MPMX19_05116 - hypothetical protein, at 601,408 to 601,869
_05116
MPMX19_05117: MPMX19_05117 - HTH-type transcriptional regulator HexR, at 602,136 to 603,053
_05117
MPMX19_05118: MPMX19_05118 - Phosphogluconate dehydratase, at 603,292 to 605,130
_05118
Position (kb) 602
603
604 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 601.168 kb on + strand, within MPMX19_05115 at 601.168 kb on + strand, within MPMX19_05115 at 601.168 kb on + strand, within MPMX19_05115 at 601.168 kb on + strand, within MPMX19_05115 at 601.168 kb on + strand, within MPMX19_05115 at 601.168 kb on + strand, within MPMX19_05115 at 601.168 kb on + strand, within MPMX19_05115 at 601.168 kb on + strand, within MPMX19_05115 at 601.169 kb on - strand, within MPMX19_05115 at 601.169 kb on - strand, within MPMX19_05115 at 601.169 kb on - strand, within MPMX19_05115 at 601.169 kb on - strand, within MPMX19_05115 at 601.382 kb on + strand at 601.382 kb on + strand at 601.382 kb on + strand at 601.382 kb on + strand at 601.382 kb on + strand at 601.382 kb on + strand at 601.383 kb on - strand at 601.383 kb on - strand at 601.383 kb on - strand at 601.383 kb on - strand at 601.383 kb on - strand at 601.383 kb on - strand at 601.383 kb on - strand at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.775 kb on + strand, within MPMX19_05116 at 601.775 kb on + strand, within MPMX19_05116 at 601.775 kb on + strand, within MPMX19_05116 at 601.775 kb on + strand, within MPMX19_05116 at 601.775 kb on + strand, within MPMX19_05116 at 601.775 kb on + strand, within MPMX19_05116 at 601.775 kb on + strand, within MPMX19_05116 at 601.775 kb on + strand, within MPMX19_05116 at 601.776 kb on - strand, within MPMX19_05116 at 601.776 kb on - strand, within MPMX19_05116 at 601.776 kb on - strand, within MPMX19_05116 at 601.776 kb on - strand, within MPMX19_05116 at 601.776 kb on - strand, within MPMX19_05116 at 601.776 kb on - strand, within MPMX19_05116 at 601.776 kb on - strand, within MPMX19_05116 at 601.776 kb on - strand, within MPMX19_05116 at 602.002 kb on - strand at 602.018 kb on + strand at 602.018 kb on + strand at 602.018 kb on + strand at 602.018 kb on + strand at 602.018 kb on + strand at 602.018 kb on + strand at 602.018 kb on + strand at 602.018 kb on + strand at 602.018 kb on + strand at 602.018 kb on + strand at 602.018 kb on + strand at 602.019 kb on - strand at 602.019 kb on - strand at 602.019 kb on - strand at 602.019 kb on - strand at 602.019 kb on - strand at 602.065 kb on + strand at 602.065 kb on + strand at 602.065 kb on + strand at 602.066 kb on - strand at 602.066 kb on - strand at 602.066 kb on - strand at 602.066 kb on - strand at 602.066 kb on - strand at 602.066 kb on - strand at 602.066 kb on - strand at 602.066 kb on - strand at 602.066 kb on - strand at 602.066 kb on - strand at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.746 kb on + strand, within MPMX19_05117 at 602.746 kb on + strand, within MPMX19_05117 at 602.746 kb on + strand, within MPMX19_05117 at 602.746 kb on + strand, within MPMX19_05117 at 602.746 kb on + strand, within MPMX19_05117 at 602.746 kb on + strand, within MPMX19_05117 at 602.747 kb on - strand, within MPMX19_05117 at 602.747 kb on - strand, within MPMX19_05117 at 602.747 kb on - strand, within MPMX19_05117 at 602.747 kb on - strand, within MPMX19_05117 at 602.747 kb on - strand, within MPMX19_05117 at 602.747 kb on - strand, within MPMX19_05117 at 603.003 kb on + strand at 603.003 kb on + strand at 603.003 kb on + strand at 603.003 kb on + strand at 603.003 kb on + strand at 603.003 kb on + strand at 603.003 kb on + strand at 603.003 kb on + strand at 603.003 kb on + strand at 603.003 kb on + strand at 603.003 kb on + strand at 603.004 kb on - strand at 603.004 kb on - strand at 603.004 kb on - strand at 603.004 kb on - strand at 603.004 kb on - strand at 603.004 kb on - strand at 603.004 kb on - strand at 603.004 kb on - strand at 603.004 kb on - strand at 603.004 kb on - strand at 603.004 kb on - strand at 603.005 kb on + strand at 603.005 kb on + strand at 603.006 kb on - strand at 603.006 kb on - strand at 603.006 kb on - strand at 603.017 kb on + strand at 603.017 kb on + strand at 603.017 kb on + strand at 603.018 kb on - strand at 603.018 kb on - strand at 603.058 kb on + strand at 603.058 kb on + strand at 603.058 kb on + strand at 603.058 kb on + strand at 603.059 kb on - strand at 603.059 kb on - strand at 603.059 kb on - strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.151 kb on + strand at 603.151 kb on + strand at 603.152 kb on - strand at 603.152 kb on - strand at 603.152 kb on - strand at 603.152 kb on - strand at 603.203 kb on - strand at 603.203 kb on - strand at 603.203 kb on - strand at 603.203 kb on - strand at 603.241 kb on + strand at 603.241 kb on + strand at 603.241 kb on + strand at 603.526 kb on + strand, within MPMX19_05118
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 601,168 + MPMX19_05115 0.90 +0.3 601,168 + MPMX19_05115 0.90 -0.7 601,168 + MPMX19_05115 0.90 -1.4 601,168 + MPMX19_05115 0.90 -0.4 601,168 + MPMX19_05115 0.90 +1.0 601,168 + MPMX19_05115 0.90 -0.2 601,168 + MPMX19_05115 0.90 -2.0 601,168 + MPMX19_05115 0.90 -0.8 601,169 - MPMX19_05115 0.90 +0.1 601,169 - MPMX19_05115 0.90 +0.0 601,169 - MPMX19_05115 0.90 -2.0 601,169 - MPMX19_05115 0.90 +0.5 601,382 + +0.5 601,382 + -0.8 601,382 + -2.3 601,382 + +1.0 601,382 + -2.2 601,382 + -0.5 601,383 - -0.3 601,383 - -1.1 601,383 - -1.3 601,383 - -0.3 601,383 - -1.2 601,383 - -0.3 601,383 - +0.3 601,490 + MPMX19_05116 0.18 -1.1 601,490 + MPMX19_05116 0.18 +1.6 601,490 + MPMX19_05116 0.18 +0.4 601,490 + MPMX19_05116 0.18 -2.0 601,490 + MPMX19_05116 0.18 +0.0 601,490 + MPMX19_05116 0.18 -1.2 601,490 + MPMX19_05116 0.18 -1.4 601,490 + MPMX19_05116 0.18 +1.3 601,490 + MPMX19_05116 0.18 +0.3 601,490 + MPMX19_05116 0.18 -0.5 601,490 + MPMX19_05116 0.18 -1.0 601,490 + MPMX19_05116 0.18 -0.4 601,490 + MPMX19_05116 0.18 -0.1 601,490 + MPMX19_05116 0.18 +0.0 601,490 + MPMX19_05116 0.18 +0.0 601,490 + MPMX19_05116 0.18 -0.3 601,490 + MPMX19_05116 0.18 +0.2 601,490 + MPMX19_05116 0.18 -0.9 601,490 + MPMX19_05116 0.18 +0.7 601,490 + MPMX19_05116 0.18 -1.2 601,490 + MPMX19_05116 0.18 -1.4 601,490 + MPMX19_05116 0.18 -0.7 601,490 + MPMX19_05116 0.18 -1.8 601,490 + MPMX19_05116 0.18 -2.2 601,490 + MPMX19_05116 0.18 -1.5 601,490 + MPMX19_05116 0.18 +1.2 601,490 + MPMX19_05116 0.18 -2.1 601,491 - MPMX19_05116 0.18 -1.0 601,491 - MPMX19_05116 0.18 -0.9 601,491 - MPMX19_05116 0.18 -0.5 601,491 - MPMX19_05116 0.18 -1.3 601,491 - MPMX19_05116 0.18 -0.4 601,491 - MPMX19_05116 0.18 -0.1 601,491 - MPMX19_05116 0.18 +0.4 601,491 - MPMX19_05116 0.18 -0.4 601,491 - MPMX19_05116 0.18 -0.6 601,491 - MPMX19_05116 0.18 -0.6 601,491 - MPMX19_05116 0.18 +0.2 601,491 - MPMX19_05116 0.18 -0.5 601,491 - MPMX19_05116 0.18 -0.8 601,491 - MPMX19_05116 0.18 +0.3 601,491 - MPMX19_05116 0.18 -0.3 601,491 - MPMX19_05116 0.18 -2.0 601,491 - MPMX19_05116 0.18 -0.9 601,491 - MPMX19_05116 0.18 -0.1 601,491 - MPMX19_05116 0.18 -1.0 601,491 - MPMX19_05116 0.18 -0.3 601,491 - MPMX19_05116 0.18 -1.0 601,491 - MPMX19_05116 0.18 +2.9 601,491 - MPMX19_05116 0.18 +0.5 601,491 - MPMX19_05116 0.18 -2.3 601,491 - MPMX19_05116 0.18 -1.8 601,775 + MPMX19_05116 0.79 +1.2 601,775 + MPMX19_05116 0.79 -1.3 601,775 + MPMX19_05116 0.79 -0.5 601,775 + MPMX19_05116 0.79 -0.6 601,775 + MPMX19_05116 0.79 -0.4 601,775 + MPMX19_05116 0.79 -1.7 601,775 + MPMX19_05116 0.79 +0.3 601,775 + MPMX19_05116 0.79 -0.4 601,776 - MPMX19_05116 0.80 +0.1 601,776 - MPMX19_05116 0.80 -0.8 601,776 - MPMX19_05116 0.80 -0.4 601,776 - MPMX19_05116 0.80 +0.0 601,776 - MPMX19_05116 0.80 +0.0 601,776 - MPMX19_05116 0.80 -2.4 601,776 - MPMX19_05116 0.80 -0.2 601,776 - MPMX19_05116 0.80 +0.2 602,002 - +0.2 602,018 + -0.4 602,018 + +0.7 602,018 + -0.4 602,018 + -1.4 602,018 + -1.3 602,018 + -0.7 602,018 + +0.6 602,018 + -0.4 602,018 + +0.0 602,018 + +0.7 602,018 + -0.3 602,019 - +0.3 602,019 - -0.5 602,019 - +0.0 602,019 - -1.4 602,019 - -2.1 602,065 + -1.8 602,065 + +0.1 602,065 + -1.4 602,066 - -1.7 602,066 - +1.2 602,066 - +0.5 602,066 - -1.9 602,066 - -1.1 602,066 - -1.0 602,066 - +1.2 602,066 - -1.1 602,066 - +0.6 602,066 - -1.8 602,284 + MPMX19_05117 0.16 -1.0 602,284 + MPMX19_05117 0.16 -1.2 602,284 + MPMX19_05117 0.16 -0.5 602,284 + MPMX19_05117 0.16 -1.1 602,284 + MPMX19_05117 0.16 +1.3 602,284 + MPMX19_05117 0.16 -1.1 602,284 + MPMX19_05117 0.16 -0.2 602,284 + MPMX19_05117 0.16 +0.3 602,284 + MPMX19_05117 0.16 +0.6 602,284 + MPMX19_05117 0.16 +0.2 602,284 + MPMX19_05117 0.16 +1.5 602,284 + MPMX19_05117 0.16 -1.0 602,284 + MPMX19_05117 0.16 -2.0 602,284 + MPMX19_05117 0.16 -1.4 602,284 + MPMX19_05117 0.16 -2.9 602,284 + MPMX19_05117 0.16 -0.5 602,285 - MPMX19_05117 0.16 -0.5 602,285 - MPMX19_05117 0.16 -1.8 602,285 - MPMX19_05117 0.16 +1.5 602,285 - MPMX19_05117 0.16 -2.2 602,285 - MPMX19_05117 0.16 -1.7 602,285 - MPMX19_05117 0.16 -0.2 602,285 - MPMX19_05117 0.16 -1.4 602,285 - MPMX19_05117 0.16 +0.0 602,285 - MPMX19_05117 0.16 -0.1 602,285 - MPMX19_05117 0.16 -0.9 602,285 - MPMX19_05117 0.16 +0.0 602,746 + MPMX19_05117 0.66 -0.0 602,746 + MPMX19_05117 0.66 +0.5 602,746 + MPMX19_05117 0.66 -0.2 602,746 + MPMX19_05117 0.66 +0.3 602,746 + MPMX19_05117 0.66 +0.7 602,746 + MPMX19_05117 0.66 -0.5 602,747 - MPMX19_05117 0.67 -0.2 602,747 - MPMX19_05117 0.67 +0.5 602,747 - MPMX19_05117 0.67 -0.3 602,747 - MPMX19_05117 0.67 -1.4 602,747 - MPMX19_05117 0.67 +0.4 602,747 - MPMX19_05117 0.67 -0.7 603,003 + -0.3 603,003 + -1.7 603,003 + +0.3 603,003 + -2.0 603,003 + -0.2 603,003 + -2.2 603,003 + -0.5 603,003 + +1.0 603,003 + +0.0 603,003 + +0.0 603,003 + -0.5 603,004 - +0.5 603,004 - -1.3 603,004 - +0.2 603,004 - +0.1 603,004 - -0.2 603,004 - +0.1 603,004 - -0.3 603,004 - -1.0 603,004 - -0.8 603,004 - +1.0 603,004 - +0.0 603,005 + -0.3 603,005 + -1.0 603,006 - -0.5 603,006 - +0.2 603,006 - -0.5 603,017 + -0.3 603,017 + -1.0 603,017 + +0.8 603,018 - -1.1 603,018 - -0.5 603,058 + -0.6 603,058 + -1.7 603,058 + +0.5 603,058 + -0.1 603,059 - -1.9 603,059 - +0.8 603,059 - -1.0 603,064 + -0.1 603,064 + -1.1 603,064 + -0.9 603,064 + -0.3 603,064 + +0.6 603,064 + +0.0 603,064 + -0.8 603,064 + -0.5 603,064 + -0.1 603,064 + -0.4 603,064 + -0.3 603,064 + -1.3 603,064 + -0.1 603,064 + -1.0 603,064 + -1.5 603,064 + +0.5 603,064 + -0.6 603,064 + -1.2 603,064 + -0.8 603,064 + -1.5 603,064 + -1.0 603,065 - -2.2 603,065 - -0.9 603,065 - +1.5 603,065 - -0.3 603,065 - +1.3 603,065 - -2.0 603,065 - -1.0 603,065 - -2.6 603,065 - +0.2 603,065 - -1.8 603,065 - +0.2 603,065 - +0.0 603,065 - -0.9 603,065 - -0.6 603,065 - -0.1 603,065 - -0.3 603,065 - -0.3 603,065 - +0.0 603,065 - +0.2 603,065 - -1.8 603,065 - -1.3 603,065 - -1.1 603,151 + +0.3 603,151 + -0.7 603,152 - -0.4 603,152 - +0.2 603,152 - -0.3 603,152 - -1.4 603,203 - -1.6 603,203 - +0.7 603,203 - -1.4 603,203 - -0.7 603,241 + -0.7 603,241 + -1.0 603,241 + +0.6 603,526 + MPMX19_05118 0.13 -1.0
Or see this region's nucleotide sequence