Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05100

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05098 and MPMX19_05099 are separated by 72 nucleotidesMPMX19_05099 and MPMX19_05100 are separated by 65 nucleotidesMPMX19_05100 and MPMX19_05101 are separated by 232 nucleotides MPMX19_05098: MPMX19_05098 - Arginine transport system permease protein ArtQ, at 585,251 to 585,898 _05098 MPMX19_05099: MPMX19_05099 - L-cystine-binding protein FliY, at 585,971 to 586,801 _05099 MPMX19_05100: MPMX19_05100 - hypothetical protein, at 586,867 to 587,730 _05100 MPMX19_05101: MPMX19_05101 - Intermembrane transport protein PqiA, at 587,963 to 589,258 _05101 Position (kb) 586 587 588Strain fitness (log2 ratio) -2 -1 0 1 2at 585.973 kb on - strandat 585.973 kb on - strandat 586.137 kb on + strand, within MPMX19_05099at 586.137 kb on + strand, within MPMX19_05099at 586.137 kb on + strand, within MPMX19_05099at 586.137 kb on + strand, within MPMX19_05099at 586.137 kb on + strand, within MPMX19_05099at 586.137 kb on + strand, within MPMX19_05099at 586.137 kb on + strand, within MPMX19_05099at 586.137 kb on + strand, within MPMX19_05099at 586.137 kb on + strand, within MPMX19_05099at 586.138 kb on - strand, within MPMX19_05099at 586.138 kb on - strand, within MPMX19_05099at 586.138 kb on - strand, within MPMX19_05099at 586.138 kb on - strand, within MPMX19_05099at 586.138 kb on - strand, within MPMX19_05099at 586.138 kb on - strand, within MPMX19_05099at 586.138 kb on - strand, within MPMX19_05099at 586.138 kb on - strand, within MPMX19_05099at 586.260 kb on + strand, within MPMX19_05099at 586.260 kb on + strand, within MPMX19_05099at 586.260 kb on + strand, within MPMX19_05099at 586.260 kb on + strand, within MPMX19_05099at 586.261 kb on - strand, within MPMX19_05099at 586.261 kb on - strand, within MPMX19_05099at 586.261 kb on - strand, within MPMX19_05099at 586.281 kb on + strand, within MPMX19_05099at 586.281 kb on + strand, within MPMX19_05099at 586.282 kb on - strand, within MPMX19_05099at 586.282 kb on - strand, within MPMX19_05099at 586.282 kb on - strand, within MPMX19_05099at 586.282 kb on - strand, within MPMX19_05099at 586.282 kb on - strand, within MPMX19_05099at 586.464 kb on + strand, within MPMX19_05099at 586.464 kb on + strand, within MPMX19_05099at 586.464 kb on + strand, within MPMX19_05099at 586.464 kb on + strand, within MPMX19_05099at 586.465 kb on - strand, within MPMX19_05099at 586.465 kb on - strand, within MPMX19_05099at 586.566 kb on + strand, within MPMX19_05099at 586.566 kb on + strand, within MPMX19_05099at 586.566 kb on + strand, within MPMX19_05099at 586.566 kb on + strand, within MPMX19_05099at 586.566 kb on + strand, within MPMX19_05099at 586.566 kb on + strand, within MPMX19_05099at 586.566 kb on + strand, within MPMX19_05099at 586.566 kb on + strand, within MPMX19_05099at 586.566 kb on + strand, within MPMX19_05099at 586.566 kb on + strand, within MPMX19_05099at 586.566 kb on + strand, within MPMX19_05099at 586.566 kb on + strand, within MPMX19_05099at 586.566 kb on + strand, within MPMX19_05099at 586.567 kb on - strand, within MPMX19_05099at 586.567 kb on - strand, within MPMX19_05099at 586.567 kb on - strand, within MPMX19_05099at 586.567 kb on - strand, within MPMX19_05099at 586.567 kb on - strand, within MPMX19_05099at 586.567 kb on - strand, within MPMX19_05099at 586.567 kb on - strand, within MPMX19_05099at 586.567 kb on - strand, within MPMX19_05099at 586.629 kb on + strand, within MPMX19_05099at 586.629 kb on + strand, within MPMX19_05099at 586.629 kb on + strand, within MPMX19_05099at 586.629 kb on + strand, within MPMX19_05099at 586.630 kb on - strand, within MPMX19_05099at 586.630 kb on - strand, within MPMX19_05099at 586.630 kb on - strand, within MPMX19_05099at 586.630 kb on - strand, within MPMX19_05099at 586.630 kb on - strand, within MPMX19_05099at 586.630 kb on - strand, within MPMX19_05099at 586.630 kb on - strand, within MPMX19_05099at 586.801 kb on + strandat 586.801 kb on + strandat 586.801 kb on + strandat 586.801 kb on + strandat 586.801 kb on + strandat 586.802 kb on - strandat 586.802 kb on - strandat 586.802 kb on - strandat 586.869 kb on - strandat 587.309 kb on + strand, within MPMX19_05100at 587.310 kb on - strand, within MPMX19_05100at 587.310 kb on - strand, within MPMX19_05100at 587.310 kb on - strand, within MPMX19_05100at 587.477 kb on + strand, within MPMX19_05100at 587.478 kb on - strand, within MPMX19_05100at 587.767 kb on - strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.775 kb on + strandat 587.775 kb on + strandat 587.776 kb on - strandat 587.776 kb on - strandat 587.776 kb on - strandat 587.776 kb on - strandat 587.776 kb on - strandat 587.780 kb on - strandat 587.849 kb on - strandat 587.849 kb on - strandat 587.881 kb on + strandat 587.881 kb on + strandat 587.881 kb on + strandat 587.882 kb on - strandat 587.882 kb on - strandat 587.882 kb on - strandat 587.882 kb on - strandat 588.455 kb on + strand, within MPMX19_05101at 588.466 kb on + strand, within MPMX19_05101at 588.466 kb on + strand, within MPMX19_05101at 588.466 kb on + strand, within MPMX19_05101at 588.466 kb on + strand, within MPMX19_05101at 588.467 kb on - strand, within MPMX19_05101at 588.467 kb on - strand, within MPMX19_05101at 588.467 kb on - strand, within MPMX19_05101at 588.467 kb on - strand, within MPMX19_05101at 588.467 kb on - strand, within MPMX19_05101

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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585,973 - -1.4
585,973 - +0.1
586,137 + MPMX19_05099 0.20 -1.6
586,137 + MPMX19_05099 0.20 +1.1
586,137 + MPMX19_05099 0.20 -0.1
586,137 + MPMX19_05099 0.20 +0.1
586,137 + MPMX19_05099 0.20 -0.2
586,137 + MPMX19_05099 0.20 +2.1
586,137 + MPMX19_05099 0.20 +0.5
586,137 + MPMX19_05099 0.20 -1.3
586,137 + MPMX19_05099 0.20 +0.1
586,138 - MPMX19_05099 0.20 -1.6
586,138 - MPMX19_05099 0.20 -0.3
586,138 - MPMX19_05099 0.20 -0.7
586,138 - MPMX19_05099 0.20 -0.0
586,138 - MPMX19_05099 0.20 -0.8
586,138 - MPMX19_05099 0.20 -0.6
586,138 - MPMX19_05099 0.20 -1.5
586,138 - MPMX19_05099 0.20 +1.5
586,260 + MPMX19_05099 0.35 -2.3
586,260 + MPMX19_05099 0.35 -0.1
586,260 + MPMX19_05099 0.35 +0.8
586,260 + MPMX19_05099 0.35 -0.9
586,261 - MPMX19_05099 0.35 +1.3
586,261 - MPMX19_05099 0.35 -2.0
586,261 - MPMX19_05099 0.35 -1.0
586,281 + MPMX19_05099 0.37 +1.3
586,281 + MPMX19_05099 0.37 -0.7
586,282 - MPMX19_05099 0.37 +0.2
586,282 - MPMX19_05099 0.37 -1.1
586,282 - MPMX19_05099 0.37 +0.3
586,282 - MPMX19_05099 0.37 -0.5
586,282 - MPMX19_05099 0.37 -1.3
586,464 + MPMX19_05099 0.59 -0.5
586,464 + MPMX19_05099 0.59 -0.2
586,464 + MPMX19_05099 0.59 -1.1
586,464 + MPMX19_05099 0.59 +1.9
586,465 - MPMX19_05099 0.59 -1.2
586,465 - MPMX19_05099 0.59 +1.1
586,566 + MPMX19_05099 0.72 +0.4
586,566 + MPMX19_05099 0.72 -1.4
586,566 + MPMX19_05099 0.72 -2.0
586,566 + MPMX19_05099 0.72 -1.3
586,566 + MPMX19_05099 0.72 -1.3
586,566 + MPMX19_05099 0.72 -0.0
586,566 + MPMX19_05099 0.72 -0.4
586,566 + MPMX19_05099 0.72 -0.2
586,566 + MPMX19_05099 0.72 -0.6
586,566 + MPMX19_05099 0.72 +0.3
586,566 + MPMX19_05099 0.72 +0.5
586,566 + MPMX19_05099 0.72 +0.5
586,566 + MPMX19_05099 0.72 -0.8
586,567 - MPMX19_05099 0.72 +0.7
586,567 - MPMX19_05099 0.72 -1.3
586,567 - MPMX19_05099 0.72 -2.1
586,567 - MPMX19_05099 0.72 -0.0
586,567 - MPMX19_05099 0.72 -0.6
586,567 - MPMX19_05099 0.72 -0.0
586,567 - MPMX19_05099 0.72 -2.2
586,567 - MPMX19_05099 0.72 +1.1
586,629 + MPMX19_05099 0.79 +0.5
586,629 + MPMX19_05099 0.79 -0.7
586,629 + MPMX19_05099 0.79 -1.3
586,629 + MPMX19_05099 0.79 -1.8
586,630 - MPMX19_05099 0.79 +0.5
586,630 - MPMX19_05099 0.79 -0.5
586,630 - MPMX19_05099 0.79 -0.0
586,630 - MPMX19_05099 0.79 -0.5
586,630 - MPMX19_05099 0.79 +1.8
586,630 - MPMX19_05099 0.79 -0.5
586,630 - MPMX19_05099 0.79 -1.3
586,801 + -2.0
586,801 + -1.4
586,801 + -1.2
586,801 + -0.6
586,801 + -0.3
586,802 - -0.4
586,802 - -0.3
586,802 - -0.1
586,869 - +0.3
587,309 + MPMX19_05100 0.51 -0.9
587,310 - MPMX19_05100 0.51 -1.3
587,310 - MPMX19_05100 0.51 -0.7
587,310 - MPMX19_05100 0.51 -2.3
587,477 + MPMX19_05100 0.71 -1.1
587,478 - MPMX19_05100 0.71 -1.6
587,767 - -0.5
587,771 + +0.2
587,771 + -1.1
587,771 + -0.9
587,771 + -0.5
587,771 + -1.0
587,771 + -0.4
587,771 + -1.0
587,771 + -0.9
587,771 + -0.3
587,771 + -0.1
587,771 + +0.5
587,771 + +0.1
587,771 + +0.1
587,771 + -0.2
587,771 + -1.2
587,771 + +0.3
587,771 + -1.4
587,771 + +0.8
587,771 + +0.1
587,771 + -1.4
587,771 + +0.7
587,771 + +0.1
587,772 - -0.3
587,772 - +0.5
587,772 - +0.4
587,772 - -0.9
587,772 - -0.9
587,772 - -0.5
587,772 - -1.3
587,772 - +0.5
587,772 - -2.7
587,772 - -2.4
587,772 - -0.1
587,772 - -1.0
587,772 - +0.4
587,772 - +0.8
587,772 - -0.1
587,772 - -0.7
587,772 - -1.1
587,772 - +0.6
587,772 - +0.6
587,772 - -0.5
587,775 + -1.5
587,775 + -2.0
587,776 - -0.7
587,776 - -0.1
587,776 - +0.1
587,776 - -0.2
587,776 - -2.0
587,780 - +0.4
587,849 - -0.7
587,849 - -0.6
587,881 + +0.5
587,881 + +0.2
587,881 + -0.3
587,882 - -1.2
587,882 - +0.1
587,882 - -0.9
587,882 - -0.1
588,455 + MPMX19_05101 0.38 +0.6
588,466 + MPMX19_05101 0.39 +0.3
588,466 + MPMX19_05101 0.39 -0.3
588,466 + MPMX19_05101 0.39 +0.4
588,466 + MPMX19_05101 0.39 -1.0
588,467 - MPMX19_05101 0.39 +0.1
588,467 - MPMX19_05101 0.39 -0.7
588,467 - MPMX19_05101 0.39 +0.8
588,467 - MPMX19_05101 0.39 -0.7
588,467 - MPMX19_05101 0.39 -1.1

Or see this region's nucleotide sequence