Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05066 and MPMX19_05067 are separated by 173 nucleotides MPMX19_05067 and MPMX19_05068 are separated by 95 nucleotides MPMX19_05068 and MPMX19_05069 are separated by 52 nucleotides
MPMX19_05066: MPMX19_05066 - 1-deoxy-D-xylulose-5-phosphate synthase, at 548,357 to 550,270
_05066
MPMX19_05067: MPMX19_05067 - hypothetical protein, at 550,444 to 551,487
_05067
MPMX19_05068: MPMX19_05068 - 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA, at 551,583 to 552,326
_05068
MPMX19_05069: MPMX19_05069 - hypothetical protein, at 552,379 to 553,608
_05069
Position (kb) 550
551
552 Strain fitness (log2 ratio) -1
0
1
2 at 550.284 kb on + strand at 550.285 kb on - strand at 550.285 kb on - strand at 550.285 kb on - strand at 550.302 kb on + strand at 550.302 kb on + strand at 550.302 kb on + strand at 550.302 kb on + strand at 550.302 kb on + strand at 550.303 kb on - strand at 550.303 kb on - strand at 550.303 kb on - strand at 550.303 kb on - strand at 550.316 kb on + strand at 550.317 kb on - strand at 550.317 kb on - strand at 550.364 kb on + strand at 550.364 kb on + strand at 550.364 kb on + strand at 550.364 kb on + strand at 550.364 kb on + strand at 550.364 kb on + strand at 550.364 kb on + strand at 550.364 kb on + strand at 550.364 kb on + strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.386 kb on + strand at 550.452 kb on + strand at 550.452 kb on + strand at 550.452 kb on + strand at 550.452 kb on + strand at 550.452 kb on + strand at 550.452 kb on + strand at 550.452 kb on + strand at 550.452 kb on + strand at 550.452 kb on + strand at 550.453 kb on - strand at 550.453 kb on - strand at 550.453 kb on - strand at 550.453 kb on - strand at 550.453 kb on - strand at 550.453 kb on - strand at 550.453 kb on - strand at 550.620 kb on + strand, within MPMX19_05067 at 551.103 kb on + strand, within MPMX19_05067 at 551.103 kb on + strand, within MPMX19_05067 at 551.104 kb on - strand, within MPMX19_05067 at 551.104 kb on - strand, within MPMX19_05067 at 551.594 kb on - strand at 551.677 kb on - strand, within MPMX19_05068 at 551.901 kb on + strand, within MPMX19_05068 at 551.901 kb on + strand, within MPMX19_05068 at 551.901 kb on + strand, within MPMX19_05068 at 551.901 kb on + strand, within MPMX19_05068 at 551.901 kb on + strand, within MPMX19_05068 at 551.901 kb on + strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 552.287 kb on + strand at 552.288 kb on - strand at 552.288 kb on - strand at 552.288 kb on - strand at 552.461 kb on + strand at 552.461 kb on + strand at 552.461 kb on + strand at 552.461 kb on + strand at 552.461 kb on + strand at 552.462 kb on - strand at 552.462 kb on - strand at 552.462 kb on - strand at 552.462 kb on - strand at 552.462 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 550,284 + +0.1 550,285 - +0.2 550,285 - -1.1 550,285 - -0.7 550,302 + +0.7 550,302 + +0.5 550,302 + +0.9 550,302 + -0.5 550,302 + -1.5 550,303 - +2.1 550,303 - +0.8 550,303 - -1.6 550,303 - +1.3 550,316 + +1.1 550,317 - +0.3 550,317 - -0.4 550,364 + -1.6 550,364 + -0.7 550,364 + -0.7 550,364 + -1.1 550,364 + -1.1 550,364 + -0.4 550,364 + +0.6 550,364 + -1.4 550,364 + -0.2 550,365 - -0.5 550,365 - +0.2 550,365 - -0.3 550,365 - -1.5 550,365 - -1.4 550,365 - +0.9 550,365 - +0.5 550,365 - +1.1 550,365 - -0.1 550,365 - -0.6 550,365 - -0.6 550,365 - -0.5 550,365 - -0.9 550,386 + -0.7 550,452 + -1.7 550,452 + +0.1 550,452 + -0.8 550,452 + +0.7 550,452 + -0.4 550,452 + -0.7 550,452 + +0.5 550,452 + -1.5 550,452 + -0.9 550,453 - +0.2 550,453 - -0.7 550,453 - +0.2 550,453 - -0.2 550,453 - -0.6 550,453 - +0.5 550,453 - -0.2 550,620 + MPMX19_05067 0.17 +0.5 551,103 + MPMX19_05067 0.63 -0.1 551,103 + MPMX19_05067 0.63 -1.2 551,104 - MPMX19_05067 0.63 +0.9 551,104 - MPMX19_05067 0.63 -0.3 551,594 - -0.9 551,677 - MPMX19_05068 0.13 +1.1 551,901 + MPMX19_05068 0.43 +0.8 551,901 + MPMX19_05068 0.43 +0.5 551,901 + MPMX19_05068 0.43 +0.3 551,901 + MPMX19_05068 0.43 +0.1 551,901 + MPMX19_05068 0.43 -0.2 551,901 + MPMX19_05068 0.43 +0.6 551,902 - MPMX19_05068 0.43 -1.6 551,902 - MPMX19_05068 0.43 +0.5 551,902 - MPMX19_05068 0.43 +0.5 551,902 - MPMX19_05068 0.43 +1.1 551,902 - MPMX19_05068 0.43 +0.1 551,902 - MPMX19_05068 0.43 -0.2 551,902 - MPMX19_05068 0.43 -1.4 551,902 - MPMX19_05068 0.43 -0.7 551,902 - MPMX19_05068 0.43 -0.2 551,902 - MPMX19_05068 0.43 -0.7 552,287 + +1.1 552,288 - +1.7 552,288 - -1.5 552,288 - +1.7 552,461 + +1.4 552,461 + +0.5 552,461 + -0.1 552,461 + -0.4 552,461 + +0.2 552,462 - +1.1 552,462 - -0.1 552,462 - -1.1 552,462 - -0.9 552,462 - +0.2
Or see this region's nucleotide sequence