Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05051

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05050 and MPMX19_05051 are separated by 78 nucleotidesMPMX19_05051 and MPMX19_05052 are separated by 73 nucleotides MPMX19_05050: MPMX19_05050 - Inner membrane ABC transporter ATP-binding protein YddA, at 534,075 to 535,871 _05050 MPMX19_05051: MPMX19_05051 - Aromatic amino acid exporter YddG, at 535,950 to 536,924 _05051 MPMX19_05052: MPMX19_05052 - Glutamyl-tRNA(Gln) amidotransferase subunit A, at 536,998 to 538,386 _05052 Position (kb) 535 536 537Strain fitness (log2 ratio) -2 -1 0 1 2 3at 534.952 kb on + strand, within MPMX19_05050at 534.952 kb on + strand, within MPMX19_05050at 534.952 kb on + strand, within MPMX19_05050at 534.953 kb on - strand, within MPMX19_05050at 534.953 kb on - strand, within MPMX19_05050at 534.953 kb on - strand, within MPMX19_05050at 534.953 kb on - strand, within MPMX19_05050at 534.953 kb on - strand, within MPMX19_05050at 535.000 kb on + strand, within MPMX19_05050at 535.001 kb on - strand, within MPMX19_05050at 535.001 kb on - strand, within MPMX19_05050at 535.177 kb on + strand, within MPMX19_05050at 535.177 kb on + strand, within MPMX19_05050at 535.178 kb on - strand, within MPMX19_05050at 535.178 kb on - strand, within MPMX19_05050at 535.252 kb on + strand, within MPMX19_05050at 535.252 kb on + strand, within MPMX19_05050at 535.252 kb on + strand, within MPMX19_05050at 535.252 kb on + strand, within MPMX19_05050at 535.252 kb on + strand, within MPMX19_05050at 535.252 kb on + strand, within MPMX19_05050at 535.252 kb on + strand, within MPMX19_05050at 535.252 kb on + strand, within MPMX19_05050at 535.252 kb on + strand, within MPMX19_05050at 535.253 kb on - strand, within MPMX19_05050at 535.253 kb on - strand, within MPMX19_05050at 535.253 kb on - strand, within MPMX19_05050at 535.253 kb on - strand, within MPMX19_05050at 535.253 kb on - strand, within MPMX19_05050at 535.253 kb on - strand, within MPMX19_05050at 535.253 kb on - strand, within MPMX19_05050at 535.253 kb on - strand, within MPMX19_05050at 535.253 kb on - strand, within MPMX19_05050at 535.253 kb on - strand, within MPMX19_05050at 535.253 kb on - strand, within MPMX19_05050at 535.276 kb on + strand, within MPMX19_05050at 535.276 kb on + strand, within MPMX19_05050at 535.276 kb on + strand, within MPMX19_05050at 535.276 kb on + strand, within MPMX19_05050at 535.276 kb on + strand, within MPMX19_05050at 535.276 kb on + strand, within MPMX19_05050at 535.277 kb on - strand, within MPMX19_05050at 535.277 kb on - strand, within MPMX19_05050at 535.277 kb on - strand, within MPMX19_05050at 535.478 kb on - strand, within MPMX19_05050at 535.478 kb on - strand, within MPMX19_05050at 535.478 kb on - strand, within MPMX19_05050at 535.480 kb on + strand, within MPMX19_05050at 535.480 kb on + strand, within MPMX19_05050at 535.480 kb on + strand, within MPMX19_05050at 535.480 kb on + strand, within MPMX19_05050at 535.480 kb on + strand, within MPMX19_05050at 535.480 kb on + strand, within MPMX19_05050at 535.480 kb on + strand, within MPMX19_05050at 535.480 kb on + strand, within MPMX19_05050at 535.480 kb on + strand, within MPMX19_05050at 535.480 kb on + strand, within MPMX19_05050at 535.480 kb on + strand, within MPMX19_05050at 535.480 kb on + strand, within MPMX19_05050at 535.481 kb on - strand, within MPMX19_05050at 535.481 kb on - strand, within MPMX19_05050at 535.481 kb on - strand, within MPMX19_05050at 535.481 kb on - strand, within MPMX19_05050at 535.481 kb on - strand, within MPMX19_05050at 535.481 kb on - strand, within MPMX19_05050at 535.481 kb on - strand, within MPMX19_05050at 535.481 kb on - strand, within MPMX19_05050at 535.481 kb on - strand, within MPMX19_05050at 535.481 kb on - strand, within MPMX19_05050at 535.481 kb on - strand, within MPMX19_05050at 535.481 kb on - strand, within MPMX19_05050at 535.481 kb on - strand, within MPMX19_05050at 535.481 kb on - strand, within MPMX19_05050at 535.481 kb on - strand, within MPMX19_05050at 535.481 kb on - strand, within MPMX19_05050at 535.481 kb on - strand, within MPMX19_05050at 535.510 kb on + strand, within MPMX19_05050at 535.510 kb on + strand, within MPMX19_05050at 535.511 kb on - strand, within MPMX19_05050at 535.511 kb on - strand, within MPMX19_05050at 535.562 kb on - strand, within MPMX19_05050at 535.562 kb on - strand, within MPMX19_05050at 535.562 kb on - strand, within MPMX19_05050at 535.570 kb on + strand, within MPMX19_05050at 535.570 kb on + strand, within MPMX19_05050at 535.570 kb on + strand, within MPMX19_05050at 535.571 kb on - strand, within MPMX19_05050at 535.571 kb on - strand, within MPMX19_05050at 535.661 kb on + strand, within MPMX19_05050at 535.661 kb on + strand, within MPMX19_05050at 535.662 kb on - strand, within MPMX19_05050at 535.778 kb on - strandat 535.855 kb on + strandat 535.855 kb on + strandat 535.855 kb on + strandat 535.855 kb on + strandat 535.855 kb on + strandat 535.856 kb on - strandat 535.856 kb on - strandat 535.856 kb on - strandat 535.913 kb on + strandat 535.913 kb on + strandat 535.968 kb on - strandat 535.968 kb on - strandat 535.968 kb on - strandat 535.968 kb on - strandat 536.086 kb on + strand, within MPMX19_05051at 536.086 kb on + strand, within MPMX19_05051at 536.086 kb on + strand, within MPMX19_05051at 536.086 kb on + strand, within MPMX19_05051at 536.087 kb on - strand, within MPMX19_05051at 536.087 kb on - strand, within MPMX19_05051at 536.087 kb on - strand, within MPMX19_05051at 536.087 kb on - strand, within MPMX19_05051at 536.087 kb on - strand, within MPMX19_05051at 536.087 kb on - strand, within MPMX19_05051at 536.087 kb on - strand, within MPMX19_05051at 536.087 kb on - strand, within MPMX19_05051at 536.128 kb on + strand, within MPMX19_05051at 536.329 kb on + strand, within MPMX19_05051at 536.329 kb on + strand, within MPMX19_05051at 536.330 kb on - strand, within MPMX19_05051at 536.330 kb on - strand, within MPMX19_05051at 536.330 kb on - strand, within MPMX19_05051at 536.368 kb on + strand, within MPMX19_05051at 536.368 kb on + strand, within MPMX19_05051at 536.369 kb on - strand, within MPMX19_05051at 536.369 kb on - strand, within MPMX19_05051at 536.369 kb on - strand, within MPMX19_05051at 536.369 kb on - strand, within MPMX19_05051at 536.369 kb on - strand, within MPMX19_05051at 536.369 kb on - strand, within MPMX19_05051at 536.542 kb on + strand, within MPMX19_05051at 536.542 kb on + strand, within MPMX19_05051at 536.542 kb on + strand, within MPMX19_05051at 536.542 kb on + strand, within MPMX19_05051at 536.542 kb on + strand, within MPMX19_05051at 536.542 kb on + strand, within MPMX19_05051at 536.542 kb on + strand, within MPMX19_05051at 536.542 kb on + strand, within MPMX19_05051at 536.543 kb on - strand, within MPMX19_05051at 536.543 kb on - strand, within MPMX19_05051at 536.543 kb on - strand, within MPMX19_05051at 536.543 kb on - strand, within MPMX19_05051at 536.543 kb on - strand, within MPMX19_05051at 536.543 kb on - strand, within MPMX19_05051at 536.543 kb on - strand, within MPMX19_05051at 536.543 kb on - strand, within MPMX19_05051at 536.543 kb on - strand, within MPMX19_05051at 536.543 kb on - strand, within MPMX19_05051at 536.543 kb on - strand, within MPMX19_05051at 536.543 kb on - strand, within MPMX19_05051at 536.611 kb on + strand, within MPMX19_05051at 536.936 kb on + strandat 536.936 kb on + strandat 536.936 kb on + strandat 536.936 kb on + strandat 536.936 kb on + strandat 536.936 kb on + strandat 536.936 kb on + strandat 536.936 kb on + strandat 536.936 kb on + strandat 536.936 kb on + strandat 536.936 kb on + strandat 536.936 kb on + strandat 536.936 kb on + strandat 536.936 kb on + strandat 536.937 kb on - strandat 536.937 kb on - strandat 536.937 kb on - strandat 536.937 kb on - strandat 536.937 kb on - strandat 536.937 kb on - strandat 536.937 kb on - strandat 536.937 kb on - strandat 536.937 kb on - strandat 536.937 kb on - strandat 536.937 kb on - strandat 536.937 kb on - strandat 536.937 kb on - strandat 536.937 kb on - strandat 536.937 kb on - strandat 536.937 kb on - strandat 536.937 kb on - strandat 536.937 kb on - strandat 536.937 kb on - strandat 536.937 kb on - strandat 536.937 kb on - strandat 536.937 kb on - strandat 536.941 kb on + strandat 536.941 kb on + strandat 536.942 kb on - strandat 537.191 kb on + strand, within MPMX19_05052at 537.191 kb on + strand, within MPMX19_05052at 537.191 kb on + strand, within MPMX19_05052at 537.192 kb on - strand, within MPMX19_05052at 537.356 kb on + strand, within MPMX19_05052at 537.356 kb on + strand, within MPMX19_05052at 537.356 kb on + strand, within MPMX19_05052at 537.356 kb on + strand, within MPMX19_05052at 537.356 kb on + strand, within MPMX19_05052at 537.356 kb on + strand, within MPMX19_05052at 537.356 kb on + strand, within MPMX19_05052at 537.357 kb on - strand, within MPMX19_05052at 537.357 kb on - strand, within MPMX19_05052at 537.357 kb on - strand, within MPMX19_05052at 537.357 kb on - strand, within MPMX19_05052at 537.357 kb on - strand, within MPMX19_05052at 537.357 kb on - strand, within MPMX19_05052at 537.857 kb on + strand, within MPMX19_05052at 537.857 kb on + strand, within MPMX19_05052at 537.857 kb on + strand, within MPMX19_05052at 537.857 kb on + strand, within MPMX19_05052at 537.857 kb on + strand, within MPMX19_05052at 537.857 kb on + strand, within MPMX19_05052at 537.857 kb on + strand, within MPMX19_05052at 537.857 kb on + strand, within MPMX19_05052at 537.857 kb on + strand, within MPMX19_05052at 537.858 kb on - strand, within MPMX19_05052at 537.858 kb on - strand, within MPMX19_05052at 537.858 kb on - strand, within MPMX19_05052

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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534,952 + MPMX19_05050 0.49 +0.1
534,952 + MPMX19_05050 0.49 -1.1
534,952 + MPMX19_05050 0.49 -0.9
534,953 - MPMX19_05050 0.49 -0.5
534,953 - MPMX19_05050 0.49 -0.3
534,953 - MPMX19_05050 0.49 -0.2
534,953 - MPMX19_05050 0.49 -0.9
534,953 - MPMX19_05050 0.49 -0.9
535,000 + MPMX19_05050 0.51 +0.0
535,001 - MPMX19_05050 0.52 +0.4
535,001 - MPMX19_05050 0.52 +1.3
535,177 + MPMX19_05050 0.61 -0.2
535,177 + MPMX19_05050 0.61 -1.5
535,178 - MPMX19_05050 0.61 +0.5
535,178 - MPMX19_05050 0.61 -0.2
535,252 + MPMX19_05050 0.65 +3.1
535,252 + MPMX19_05050 0.65 +0.1
535,252 + MPMX19_05050 0.65 -0.7
535,252 + MPMX19_05050 0.65 -0.8
535,252 + MPMX19_05050 0.65 +0.8
535,252 + MPMX19_05050 0.65 +0.9
535,252 + MPMX19_05050 0.65 -1.3
535,252 + MPMX19_05050 0.65 -1.0
535,252 + MPMX19_05050 0.65 +0.5
535,253 - MPMX19_05050 0.66 +1.6
535,253 - MPMX19_05050 0.66 +0.3
535,253 - MPMX19_05050 0.66 -1.2
535,253 - MPMX19_05050 0.66 -0.5
535,253 - MPMX19_05050 0.66 -1.0
535,253 - MPMX19_05050 0.66 +0.5
535,253 - MPMX19_05050 0.66 -1.6
535,253 - MPMX19_05050 0.66 -0.5
535,253 - MPMX19_05050 0.66 +0.3
535,253 - MPMX19_05050 0.66 -0.1
535,253 - MPMX19_05050 0.66 +0.1
535,276 + MPMX19_05050 0.67 -1.2
535,276 + MPMX19_05050 0.67 -0.7
535,276 + MPMX19_05050 0.67 -0.5
535,276 + MPMX19_05050 0.67 +0.1
535,276 + MPMX19_05050 0.67 +0.9
535,276 + MPMX19_05050 0.67 -1.5
535,277 - MPMX19_05050 0.67 -0.3
535,277 - MPMX19_05050 0.67 -0.1
535,277 - MPMX19_05050 0.67 -2.3
535,478 - MPMX19_05050 0.78 +2.1
535,478 - MPMX19_05050 0.78 +0.4
535,478 - MPMX19_05050 0.78 +0.2
535,480 + MPMX19_05050 0.78 -0.5
535,480 + MPMX19_05050 0.78 -1.4
535,480 + MPMX19_05050 0.78 -1.1
535,480 + MPMX19_05050 0.78 +0.1
535,480 + MPMX19_05050 0.78 +0.9
535,480 + MPMX19_05050 0.78 -0.7
535,480 + MPMX19_05050 0.78 -1.6
535,480 + MPMX19_05050 0.78 -0.5
535,480 + MPMX19_05050 0.78 -1.9
535,480 + MPMX19_05050 0.78 -0.8
535,480 + MPMX19_05050 0.78 -1.2
535,480 + MPMX19_05050 0.78 -2.5
535,481 - MPMX19_05050 0.78 +0.4
535,481 - MPMX19_05050 0.78 -0.2
535,481 - MPMX19_05050 0.78 +0.5
535,481 - MPMX19_05050 0.78 -0.5
535,481 - MPMX19_05050 0.78 -0.2
535,481 - MPMX19_05050 0.78 -1.4
535,481 - MPMX19_05050 0.78 +0.9
535,481 - MPMX19_05050 0.78 +0.5
535,481 - MPMX19_05050 0.78 -1.8
535,481 - MPMX19_05050 0.78 +0.2
535,481 - MPMX19_05050 0.78 +0.2
535,481 - MPMX19_05050 0.78 +1.1
535,481 - MPMX19_05050 0.78 -0.5
535,481 - MPMX19_05050 0.78 -0.7
535,481 - MPMX19_05050 0.78 +0.4
535,481 - MPMX19_05050 0.78 -0.2
535,481 - MPMX19_05050 0.78 -0.1
535,510 + MPMX19_05050 0.80 +2.1
535,510 + MPMX19_05050 0.80 +0.2
535,511 - MPMX19_05050 0.80 +1.5
535,511 - MPMX19_05050 0.80 +0.3
535,562 - MPMX19_05050 0.83 -2.0
535,562 - MPMX19_05050 0.83 +0.1
535,562 - MPMX19_05050 0.83 -0.7
535,570 + MPMX19_05050 0.83 -2.1
535,570 + MPMX19_05050 0.83 +0.1
535,570 + MPMX19_05050 0.83 -0.7
535,571 - MPMX19_05050 0.83 +1.1
535,571 - MPMX19_05050 0.83 -0.7
535,661 + MPMX19_05050 0.88 +0.1
535,661 + MPMX19_05050 0.88 +0.8
535,662 - MPMX19_05050 0.88 -1.5
535,778 - -0.8
535,855 + -1.4
535,855 + +0.5
535,855 + -0.1
535,855 + -1.4
535,855 + -0.4
535,856 - -0.9
535,856 - -1.6
535,856 - -0.6
535,913 + -0.2
535,913 + +0.8
535,968 - -0.8
535,968 - -1.2
535,968 - -0.3
535,968 - -0.3
536,086 + MPMX19_05051 0.14 -0.2
536,086 + MPMX19_05051 0.14 -0.5
536,086 + MPMX19_05051 0.14 -1.3
536,086 + MPMX19_05051 0.14 +1.9
536,087 - MPMX19_05051 0.14 -0.3
536,087 - MPMX19_05051 0.14 +1.4
536,087 - MPMX19_05051 0.14 -0.4
536,087 - MPMX19_05051 0.14 -2.0
536,087 - MPMX19_05051 0.14 -1.0
536,087 - MPMX19_05051 0.14 -1.7
536,087 - MPMX19_05051 0.14 +0.5
536,087 - MPMX19_05051 0.14 -0.7
536,128 + MPMX19_05051 0.18 -2.6
536,329 + MPMX19_05051 0.39 -0.9
536,329 + MPMX19_05051 0.39 +0.7
536,330 - MPMX19_05051 0.39 +1.4
536,330 - MPMX19_05051 0.39 -2.1
536,330 - MPMX19_05051 0.39 -0.7
536,368 + MPMX19_05051 0.43 +0.2
536,368 + MPMX19_05051 0.43 +0.5
536,369 - MPMX19_05051 0.43 +0.3
536,369 - MPMX19_05051 0.43 -0.3
536,369 - MPMX19_05051 0.43 -0.6
536,369 - MPMX19_05051 0.43 -0.7
536,369 - MPMX19_05051 0.43 +0.1
536,369 - MPMX19_05051 0.43 -0.5
536,542 + MPMX19_05051 0.61 -0.2
536,542 + MPMX19_05051 0.61 -1.8
536,542 + MPMX19_05051 0.61 -0.1
536,542 + MPMX19_05051 0.61 -0.7
536,542 + MPMX19_05051 0.61 -0.1
536,542 + MPMX19_05051 0.61 -2.2
536,542 + MPMX19_05051 0.61 -1.5
536,542 + MPMX19_05051 0.61 -0.1
536,543 - MPMX19_05051 0.61 -1.7
536,543 - MPMX19_05051 0.61 -2.2
536,543 - MPMX19_05051 0.61 -1.5
536,543 - MPMX19_05051 0.61 -0.4
536,543 - MPMX19_05051 0.61 +0.6
536,543 - MPMX19_05051 0.61 -1.8
536,543 - MPMX19_05051 0.61 -1.6
536,543 - MPMX19_05051 0.61 -0.5
536,543 - MPMX19_05051 0.61 -0.5
536,543 - MPMX19_05051 0.61 -1.4
536,543 - MPMX19_05051 0.61 +0.8
536,543 - MPMX19_05051 0.61 +1.8
536,611 + MPMX19_05051 0.68 -1.7
536,936 + +0.5
536,936 + -0.2
536,936 + +0.9
536,936 + -0.2
536,936 + -1.5
536,936 + -0.5
536,936 + -0.8
536,936 + -0.3
536,936 + +0.1
536,936 + +0.1
536,936 + -0.6
536,936 + +1.1
536,936 + -0.5
536,936 + +0.3
536,937 - +0.9
536,937 - -0.3
536,937 - -0.5
536,937 - +0.5
536,937 - -0.1
536,937 - -0.5
536,937 - -0.4
536,937 - -1.8
536,937 - -1.3
536,937 - -0.7
536,937 - +0.2
536,937 - -1.1
536,937 - +0.1
536,937 - +0.8
536,937 - -0.8
536,937 - +0.4
536,937 - +0.0
536,937 - -0.4
536,937 - -0.9
536,937 - -0.5
536,937 - -0.7
536,937 - +0.6
536,941 + -0.1
536,941 + -0.2
536,942 - -0.5
537,191 + MPMX19_05052 0.14 -0.0
537,191 + MPMX19_05052 0.14 +0.0
537,191 + MPMX19_05052 0.14 -0.7
537,192 - MPMX19_05052 0.14 -0.9
537,356 + MPMX19_05052 0.26 -0.1
537,356 + MPMX19_05052 0.26 -0.3
537,356 + MPMX19_05052 0.26 -2.0
537,356 + MPMX19_05052 0.26 -1.4
537,356 + MPMX19_05052 0.26 +0.2
537,356 + MPMX19_05052 0.26 -0.2
537,356 + MPMX19_05052 0.26 +0.8
537,357 - MPMX19_05052 0.26 -0.2
537,357 - MPMX19_05052 0.26 -0.2
537,357 - MPMX19_05052 0.26 -2.6
537,357 - MPMX19_05052 0.26 +0.0
537,357 - MPMX19_05052 0.26 +0.3
537,357 - MPMX19_05052 0.26 +0.4
537,857 + MPMX19_05052 0.62 +0.3
537,857 + MPMX19_05052 0.62 +0.1
537,857 + MPMX19_05052 0.62 -0.0
537,857 + MPMX19_05052 0.62 -0.4
537,857 + MPMX19_05052 0.62 -1.2
537,857 + MPMX19_05052 0.62 +0.1
537,857 + MPMX19_05052 0.62 -0.0
537,857 + MPMX19_05052 0.62 -1.4
537,857 + MPMX19_05052 0.62 +0.2
537,858 - MPMX19_05052 0.62 -1.6
537,858 - MPMX19_05052 0.62 +0.3
537,858 - MPMX19_05052 0.62 -1.2

Or see this region's nucleotide sequence