Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05021 and MPMX19_05022 are separated by 440 nucleotides MPMX19_05022 and MPMX19_05023 are separated by 67 nucleotides MPMX19_05023 and MPMX19_05024 are separated by 211 nucleotides
MPMX19_05021: MPMX19_05021 - Methylmalonyl-CoA mutase, at 505,144 to 507,297
_05021
MPMX19_05022: MPMX19_05022 - hypothetical protein, at 507,738 to 508,430
_05022
MPMX19_05023: MPMX19_05023 - hypothetical protein, at 508,498 to 509,124
_05023
MPMX19_05024: MPMX19_05024 - Cytochrome bd-II ubiquinol oxidase subunit 1, at 509,336 to 510,733
_05024
Position (kb) 507
508
509 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 506.815 kb on + strand, within MPMX19_05021 at 506.827 kb on + strand, within MPMX19_05021 at 506.827 kb on + strand, within MPMX19_05021 at 506.828 kb on - strand, within MPMX19_05021 at 506.828 kb on - strand, within MPMX19_05021 at 507.197 kb on - strand at 507.197 kb on - strand at 507.220 kb on + strand at 507.220 kb on + strand at 507.220 kb on + strand at 507.221 kb on - strand at 507.221 kb on - strand at 507.221 kb on - strand at 507.221 kb on - strand at 507.221 kb on - strand at 507.221 kb on - strand at 507.221 kb on - strand at 507.221 kb on - strand at 507.291 kb on + strand at 507.362 kb on + strand at 507.420 kb on + strand at 507.420 kb on + strand at 507.420 kb on + strand at 507.420 kb on + strand at 507.420 kb on + strand at 507.421 kb on - strand at 507.421 kb on - strand at 507.421 kb on - strand at 507.421 kb on - strand at 507.421 kb on - strand at 507.421 kb on - strand at 507.421 kb on - strand at 507.441 kb on + strand at 507.441 kb on + strand at 507.441 kb on + strand at 507.441 kb on + strand at 507.441 kb on + strand at 507.441 kb on + strand at 507.441 kb on + strand at 507.441 kb on + strand at 507.441 kb on + strand at 507.441 kb on + strand at 507.441 kb on + strand at 507.442 kb on - strand at 507.442 kb on - strand at 507.442 kb on - strand at 507.442 kb on - strand at 507.442 kb on - strand at 507.442 kb on - strand at 507.442 kb on - strand at 507.442 kb on - strand at 507.461 kb on + strand at 507.462 kb on - strand at 507.474 kb on + strand at 507.474 kb on + strand at 507.475 kb on - strand at 507.475 kb on - strand at 507.475 kb on - strand at 507.475 kb on - strand at 507.765 kb on + strand at 507.766 kb on - strand at 507.766 kb on - strand at 507.766 kb on - strand at 507.766 kb on - strand at 507.766 kb on - strand at 507.801 kb on + strand at 507.801 kb on + strand at 507.802 kb on - strand at 507.945 kb on + strand, within MPMX19_05022 at 507.945 kb on + strand, within MPMX19_05022 at 507.945 kb on + strand, within MPMX19_05022 at 507.945 kb on + strand, within MPMX19_05022 at 507.945 kb on + strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 508.104 kb on + strand, within MPMX19_05022 at 508.104 kb on + strand, within MPMX19_05022 at 508.104 kb on + strand, within MPMX19_05022 at 508.104 kb on + strand, within MPMX19_05022 at 508.105 kb on - strand, within MPMX19_05022 at 508.105 kb on - strand, within MPMX19_05022 at 508.105 kb on - strand, within MPMX19_05022 at 508.105 kb on - strand, within MPMX19_05022 at 508.105 kb on - strand, within MPMX19_05022 at 508.121 kb on + strand, within MPMX19_05022 at 508.121 kb on + strand, within MPMX19_05022 at 508.121 kb on + strand, within MPMX19_05022 at 508.122 kb on - strand, within MPMX19_05022 at 508.122 kb on - strand, within MPMX19_05022 at 508.332 kb on + strand, within MPMX19_05022 at 508.332 kb on + strand, within MPMX19_05022 at 508.332 kb on + strand, within MPMX19_05022 at 508.332 kb on + strand, within MPMX19_05022 at 508.332 kb on + strand, within MPMX19_05022 at 508.332 kb on + strand, within MPMX19_05022 at 508.332 kb on + strand, within MPMX19_05022 at 508.332 kb on + strand, within MPMX19_05022 at 508.333 kb on - strand, within MPMX19_05022 at 508.333 kb on - strand, within MPMX19_05022 at 508.333 kb on - strand, within MPMX19_05022 at 508.333 kb on - strand, within MPMX19_05022 at 508.333 kb on - strand, within MPMX19_05022 at 508.333 kb on - strand, within MPMX19_05022 at 508.333 kb on - strand, within MPMX19_05022 at 508.365 kb on + strand at 508.365 kb on + strand at 508.365 kb on + strand at 508.365 kb on + strand at 508.366 kb on - strand at 508.366 kb on - strand at 508.366 kb on - strand at 508.366 kb on - strand at 508.450 kb on + strand at 508.450 kb on + strand at 508.450 kb on + strand at 508.451 kb on - strand at 508.451 kb on - strand at 508.451 kb on - strand at 508.451 kb on - strand at 508.451 kb on - strand at 508.451 kb on - strand at 508.507 kb on + strand at 508.507 kb on + strand at 508.507 kb on + strand at 508.507 kb on + strand at 508.507 kb on + strand at 508.507 kb on + strand at 508.507 kb on + strand at 508.508 kb on - strand at 508.508 kb on - strand at 508.508 kb on - strand at 508.508 kb on - strand at 508.508 kb on - strand at 508.508 kb on - strand at 508.508 kb on - strand at 508.508 kb on - strand at 508.508 kb on - strand at 508.663 kb on + strand, within MPMX19_05023 at 508.664 kb on - strand, within MPMX19_05023 at 508.664 kb on - strand, within MPMX19_05023 at 508.664 kb on - strand, within MPMX19_05023 at 509.110 kb on + strand at 509.110 kb on + strand at 509.110 kb on + strand at 509.111 kb on - strand at 509.111 kb on - strand at 509.111 kb on - strand at 509.199 kb on + strand at 509.199 kb on + strand at 509.199 kb on + strand at 509.199 kb on + strand at 509.199 kb on + strand at 509.200 kb on - strand at 509.200 kb on - strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.303 kb on + strand at 509.303 kb on + strand at 509.303 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 506,815 + MPMX19_05021 0.78 +0.3 506,827 + MPMX19_05021 0.78 +0.5 506,827 + MPMX19_05021 0.78 +0.5 506,828 - MPMX19_05021 0.78 -0.1 506,828 - MPMX19_05021 0.78 -0.7 507,197 - -0.0 507,197 - +0.9 507,220 + -1.5 507,220 + -0.5 507,220 + -0.2 507,221 - -0.5 507,221 - +0.5 507,221 - +0.8 507,221 - +2.4 507,221 - -0.2 507,221 - -0.1 507,221 - -1.4 507,221 - +0.1 507,291 + +0.7 507,362 + -0.7 507,420 + -0.1 507,420 + -1.2 507,420 + -0.5 507,420 + +0.7 507,420 + -2.0 507,421 - -0.5 507,421 - +0.4 507,421 - -0.2 507,421 - +0.6 507,421 - +0.2 507,421 - -0.1 507,421 - +0.3 507,441 + +0.7 507,441 + +0.5 507,441 + +0.0 507,441 + -1.1 507,441 + -0.1 507,441 + -0.9 507,441 + -0.1 507,441 + +0.2 507,441 + -0.8 507,441 + -0.5 507,441 + -0.7 507,442 - -3.7 507,442 - +1.1 507,442 - +0.9 507,442 - +1.4 507,442 - -1.1 507,442 - -1.6 507,442 - -0.2 507,442 - +0.1 507,461 + -0.6 507,462 - +1.4 507,474 + -1.6 507,474 + +0.4 507,475 - -0.3 507,475 - -0.8 507,475 - -0.2 507,475 - -0.1 507,765 + +1.1 507,766 - -1.5 507,766 - -2.0 507,766 - -0.6 507,766 - -0.2 507,766 - -0.2 507,801 + +0.3 507,801 + -2.1 507,802 - -0.1 507,945 + MPMX19_05022 0.30 -0.1 507,945 + MPMX19_05022 0.30 -1.2 507,945 + MPMX19_05022 0.30 -0.5 507,945 + MPMX19_05022 0.30 -1.8 507,945 + MPMX19_05022 0.30 +0.1 507,946 - MPMX19_05022 0.30 +0.9 507,946 - MPMX19_05022 0.30 +0.6 507,946 - MPMX19_05022 0.30 +0.8 507,946 - MPMX19_05022 0.30 -0.1 507,946 - MPMX19_05022 0.30 +0.6 507,946 - MPMX19_05022 0.30 -0.3 507,946 - MPMX19_05022 0.30 +1.1 507,946 - MPMX19_05022 0.30 -0.1 507,946 - MPMX19_05022 0.30 +0.5 507,946 - MPMX19_05022 0.30 -0.7 507,946 - MPMX19_05022 0.30 -0.5 508,104 + MPMX19_05022 0.53 -0.7 508,104 + MPMX19_05022 0.53 +0.8 508,104 + MPMX19_05022 0.53 +0.1 508,104 + MPMX19_05022 0.53 +0.3 508,105 - MPMX19_05022 0.53 -0.6 508,105 - MPMX19_05022 0.53 -0.9 508,105 - MPMX19_05022 0.53 +0.9 508,105 - MPMX19_05022 0.53 -0.9 508,105 - MPMX19_05022 0.53 -1.1 508,121 + MPMX19_05022 0.55 -0.6 508,121 + MPMX19_05022 0.55 -0.4 508,121 + MPMX19_05022 0.55 +1.3 508,122 - MPMX19_05022 0.55 +0.3 508,122 - MPMX19_05022 0.55 +0.1 508,332 + MPMX19_05022 0.86 +0.3 508,332 + MPMX19_05022 0.86 +0.1 508,332 + MPMX19_05022 0.86 -1.4 508,332 + MPMX19_05022 0.86 -1.2 508,332 + MPMX19_05022 0.86 +1.4 508,332 + MPMX19_05022 0.86 +0.8 508,332 + MPMX19_05022 0.86 +0.6 508,332 + MPMX19_05022 0.86 -0.7 508,333 - MPMX19_05022 0.86 +1.6 508,333 - MPMX19_05022 0.86 +2.1 508,333 - MPMX19_05022 0.86 -0.9 508,333 - MPMX19_05022 0.86 +0.9 508,333 - MPMX19_05022 0.86 -0.8 508,333 - MPMX19_05022 0.86 -0.3 508,333 - MPMX19_05022 0.86 -0.2 508,365 + +1.7 508,365 + -0.9 508,365 + -0.1 508,365 + +0.5 508,366 - +0.3 508,366 - +0.3 508,366 - +0.5 508,366 - -0.9 508,450 + +1.3 508,450 + -0.4 508,450 + -0.7 508,451 - -0.4 508,451 - +0.9 508,451 - +0.3 508,451 - -1.8 508,451 - -1.8 508,451 - -1.9 508,507 + -0.4 508,507 + -2.0 508,507 + -1.3 508,507 + -0.5 508,507 + -1.7 508,507 + +0.4 508,507 + -0.4 508,508 - -1.4 508,508 - +0.1 508,508 - -0.3 508,508 - -0.9 508,508 - +0.0 508,508 - +1.2 508,508 - +0.1 508,508 - -1.7 508,508 - -0.5 508,663 + MPMX19_05023 0.26 +0.4 508,664 - MPMX19_05023 0.26 -0.9 508,664 - MPMX19_05023 0.26 -1.5 508,664 - MPMX19_05023 0.26 +0.3 509,110 + -1.1 509,110 + -1.8 509,110 + -0.8 509,111 - -0.6 509,111 - +0.3 509,111 - -0.3 509,199 + -0.5 509,199 + +0.4 509,199 + +1.4 509,199 + -1.2 509,199 + -0.8 509,200 - -0.7 509,200 - -0.1 509,254 + +1.0 509,254 + -0.3 509,254 + -2.1 509,254 + +0.4 509,254 + -0.9 509,254 + +0.4 509,254 + +0.5 509,254 + -0.6 509,254 + -0.2 509,254 + -0.5 509,254 + +0.7 509,254 + +2.2 509,254 + -1.2 509,254 + -0.1 509,254 + +0.9 509,254 + -0.9 509,254 + -0.0 509,254 + -0.8 509,254 + -1.1 509,254 + -0.5 509,254 + -0.8 509,254 + -0.4 509,254 + -0.9 509,255 - +0.5 509,255 - +0.5 509,255 - -1.4 509,255 - +0.5 509,255 - -0.2 509,255 - +0.3 509,255 - +0.9 509,255 - +0.1 509,255 - +0.9 509,255 - +0.7 509,255 - -0.7 509,255 - +1.4 509,255 - -0.7 509,255 - -1.0 509,255 - -2.7 509,255 - -0.9 509,255 - -0.7 509,255 - +0.1 509,255 - -0.6 509,255 - -1.4 509,255 - -0.1 509,255 - -0.7 509,255 - -0.9 509,255 - -0.6 509,255 - +0.1 509,303 + +0.0 509,303 + +1.1 509,303 + -2.4
Or see this region's nucleotide sequence