Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05017

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05016 and MPMX19_05017 are separated by 216 nucleotidesMPMX19_05017 and MPMX19_05018 overlap by 29 nucleotides MPMX19_05016: MPMX19_05016 - Sensor histidine kinase RcsC, at 497,255 to 498,133 _05016 MPMX19_05017: MPMX19_05017 - hypothetical protein, at 498,350 to 499,816 _05017 MPMX19_05018: MPMX19_05018 - HTH-type transcriptional regulator RamB, at 499,788 to 501,236 _05018 Position (kb) 498 499 500Strain fitness (log2 ratio) -2 -1 0 1 2at 497.823 kb on + strand, within MPMX19_05016at 497.824 kb on - strand, within MPMX19_05016at 497.824 kb on - strand, within MPMX19_05016at 498.298 kb on + strandat 498.298 kb on + strandat 498.298 kb on + strandat 498.298 kb on + strandat 498.298 kb on + strandat 498.298 kb on + strandat 498.298 kb on + strandat 498.298 kb on + strandat 498.298 kb on + strandat 498.298 kb on + strandat 498.299 kb on - strandat 498.299 kb on - strandat 498.299 kb on - strandat 498.299 kb on - strandat 498.299 kb on - strandat 498.299 kb on - strandat 498.299 kb on - strandat 498.299 kb on - strandat 498.299 kb on - strandat 498.299 kb on - strandat 498.306 kb on + strandat 498.307 kb on - strandat 498.349 kb on + strandat 498.349 kb on + strandat 498.349 kb on + strandat 498.349 kb on + strandat 498.349 kb on + strandat 498.378 kb on + strandat 498.446 kb on + strandat 498.446 kb on + strandat 498.447 kb on - strandat 498.447 kb on - strandat 498.479 kb on + strandat 498.479 kb on + strandat 498.479 kb on + strandat 498.480 kb on - strandat 498.480 kb on - strandat 498.480 kb on - strandat 498.480 kb on - strandat 498.480 kb on - strandat 498.480 kb on - strandat 498.480 kb on - strandat 498.506 kb on + strand, within MPMX19_05017at 498.506 kb on + strand, within MPMX19_05017at 499.007 kb on + strand, within MPMX19_05017at 499.007 kb on + strand, within MPMX19_05017at 499.344 kb on - strand, within MPMX19_05017at 499.371 kb on + strand, within MPMX19_05017at 499.371 kb on + strand, within MPMX19_05017at 499.371 kb on + strand, within MPMX19_05017at 499.372 kb on - strand, within MPMX19_05017at 499.372 kb on - strand, within MPMX19_05017at 499.372 kb on - strand, within MPMX19_05017at 499.372 kb on - strand, within MPMX19_05017at 499.372 kb on - strand, within MPMX19_05017at 499.372 kb on - strand, within MPMX19_05017at 499.372 kb on - strand, within MPMX19_05017at 499.406 kb on + strand, within MPMX19_05017at 499.407 kb on - strand, within MPMX19_05017at 499.586 kb on + strand, within MPMX19_05017at 499.587 kb on - strand, within MPMX19_05017at 499.691 kb on + strandat 499.691 kb on + strandat 499.691 kb on + strandat 499.692 kb on - strandat 499.822 kb on + strandat 499.823 kb on - strandat 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.976 kb on - strand, within MPMX19_05018at 499.976 kb on - strand, within MPMX19_05018at 499.976 kb on - strand, within MPMX19_05018at 500.044 kb on + strand, within MPMX19_05018at 500.045 kb on - strand, within MPMX19_05018at 500.084 kb on + strand, within MPMX19_05018at 500.084 kb on + strand, within MPMX19_05018at 500.084 kb on + strand, within MPMX19_05018at 500.084 kb on + strand, within MPMX19_05018at 500.084 kb on + strand, within MPMX19_05018at 500.084 kb on + strand, within MPMX19_05018at 500.085 kb on - strand, within MPMX19_05018at 500.085 kb on - strand, within MPMX19_05018at 500.085 kb on - strand, within MPMX19_05018at 500.085 kb on - strand, within MPMX19_05018at 500.085 kb on - strand, within MPMX19_05018at 500.085 kb on - strand, within MPMX19_05018at 500.086 kb on + strand, within MPMX19_05018at 500.086 kb on + strand, within MPMX19_05018at 500.086 kb on + strand, within MPMX19_05018at 500.086 kb on + strand, within MPMX19_05018at 500.086 kb on + strand, within MPMX19_05018at 500.086 kb on + strand, within MPMX19_05018at 500.086 kb on + strand, within MPMX19_05018at 500.086 kb on + strand, within MPMX19_05018at 500.086 kb on + strand, within MPMX19_05018at 500.086 kb on + strand, within MPMX19_05018at 500.087 kb on - strand, within MPMX19_05018at 500.087 kb on - strand, within MPMX19_05018at 500.087 kb on - strand, within MPMX19_05018at 500.087 kb on - strand, within MPMX19_05018at 500.087 kb on - strand, within MPMX19_05018at 500.087 kb on - strand, within MPMX19_05018at 500.254 kb on + strand, within MPMX19_05018at 500.393 kb on - strand, within MPMX19_05018at 500.419 kb on + strand, within MPMX19_05018at 500.419 kb on + strand, within MPMX19_05018at 500.420 kb on - strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.672 kb on - strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.770 kb on + strand, within MPMX19_05018at 500.771 kb on - strand, within MPMX19_05018at 500.779 kb on + strand, within MPMX19_05018at 500.779 kb on + strand, within MPMX19_05018at 500.798 kb on - strand, within MPMX19_05018

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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497,823 + MPMX19_05016 0.65 +1.7
497,824 - MPMX19_05016 0.65 -1.7
497,824 - MPMX19_05016 0.65 -1.4
498,298 + -0.3
498,298 + -1.1
498,298 + +0.4
498,298 + +0.5
498,298 + -0.6
498,298 + +1.8
498,298 + -1.2
498,298 + -0.5
498,298 + -1.4
498,298 + -0.2
498,299 - -0.4
498,299 - -0.1
498,299 - +0.3
498,299 - -0.1
498,299 - -0.9
498,299 - -2.1
498,299 - -1.7
498,299 - +0.1
498,299 - -0.4
498,299 - -0.1
498,306 + +0.7
498,307 - +0.2
498,349 + -0.7
498,349 + -1.4
498,349 + -1.5
498,349 + +2.1
498,349 + -0.6
498,378 + +0.6
498,446 + -0.1
498,446 + -1.1
498,447 - -0.7
498,447 - +0.1
498,479 + -1.8
498,479 + -1.5
498,479 + +0.5
498,480 - +0.4
498,480 - -1.4
498,480 - -0.3
498,480 - +0.5
498,480 - -0.9
498,480 - -0.5
498,480 - +0.9
498,506 + MPMX19_05017 0.11 -1.2
498,506 + MPMX19_05017 0.11 -1.5
499,007 + MPMX19_05017 0.45 -1.6
499,007 + MPMX19_05017 0.45 -0.5
499,344 - MPMX19_05017 0.68 +0.5
499,371 + MPMX19_05017 0.70 -0.4
499,371 + MPMX19_05017 0.70 -0.5
499,371 + MPMX19_05017 0.70 +0.7
499,372 - MPMX19_05017 0.70 -1.7
499,372 - MPMX19_05017 0.70 -0.9
499,372 - MPMX19_05017 0.70 -0.6
499,372 - MPMX19_05017 0.70 -1.8
499,372 - MPMX19_05017 0.70 -0.8
499,372 - MPMX19_05017 0.70 +1.0
499,372 - MPMX19_05017 0.70 -1.9
499,406 + MPMX19_05017 0.72 -0.5
499,407 - MPMX19_05017 0.72 +0.1
499,586 + MPMX19_05017 0.84 -0.7
499,587 - MPMX19_05017 0.84 +0.5
499,691 + -1.7
499,691 + -0.7
499,691 + -0.5
499,692 - -0.8
499,822 + -0.8
499,823 - +0.5
499,975 + MPMX19_05018 0.13 -0.2
499,975 + MPMX19_05018 0.13 +0.1
499,975 + MPMX19_05018 0.13 -1.2
499,975 + MPMX19_05018 0.13 +0.5
499,975 + MPMX19_05018 0.13 -1.0
499,975 + MPMX19_05018 0.13 +1.3
499,975 + MPMX19_05018 0.13 +1.1
499,975 + MPMX19_05018 0.13 +1.1
499,975 + MPMX19_05018 0.13 -0.4
499,975 + MPMX19_05018 0.13 -0.6
499,975 + MPMX19_05018 0.13 +1.5
499,975 + MPMX19_05018 0.13 -0.2
499,976 - MPMX19_05018 0.13 -0.7
499,976 - MPMX19_05018 0.13 +0.6
499,976 - MPMX19_05018 0.13 +1.1
500,044 + MPMX19_05018 0.18 +0.6
500,045 - MPMX19_05018 0.18 -0.1
500,084 + MPMX19_05018 0.20 +1.8
500,084 + MPMX19_05018 0.20 +0.1
500,084 + MPMX19_05018 0.20 -0.4
500,084 + MPMX19_05018 0.20 -1.4
500,084 + MPMX19_05018 0.20 -0.6
500,084 + MPMX19_05018 0.20 -0.1
500,085 - MPMX19_05018 0.20 -0.7
500,085 - MPMX19_05018 0.20 -1.1
500,085 - MPMX19_05018 0.20 -0.1
500,085 - MPMX19_05018 0.20 -0.7
500,085 - MPMX19_05018 0.20 +0.0
500,085 - MPMX19_05018 0.20 -0.3
500,086 + MPMX19_05018 0.21 -0.4
500,086 + MPMX19_05018 0.21 -1.4
500,086 + MPMX19_05018 0.21 -0.3
500,086 + MPMX19_05018 0.21 -0.8
500,086 + MPMX19_05018 0.21 -0.4
500,086 + MPMX19_05018 0.21 +1.1
500,086 + MPMX19_05018 0.21 -0.1
500,086 + MPMX19_05018 0.21 +1.8
500,086 + MPMX19_05018 0.21 +0.4
500,086 + MPMX19_05018 0.21 -0.5
500,087 - MPMX19_05018 0.21 +0.5
500,087 - MPMX19_05018 0.21 -0.1
500,087 - MPMX19_05018 0.21 -1.1
500,087 - MPMX19_05018 0.21 -0.4
500,087 - MPMX19_05018 0.21 +0.5
500,087 - MPMX19_05018 0.21 -1.0
500,254 + MPMX19_05018 0.32 +0.8
500,393 - MPMX19_05018 0.42 +1.4
500,419 + MPMX19_05018 0.44 +1.3
500,419 + MPMX19_05018 0.44 +0.9
500,420 - MPMX19_05018 0.44 -0.2
500,599 + MPMX19_05018 0.56 -0.9
500,599 + MPMX19_05018 0.56 -0.2
500,599 + MPMX19_05018 0.56 -0.4
500,599 + MPMX19_05018 0.56 -0.5
500,599 + MPMX19_05018 0.56 -0.0
500,599 + MPMX19_05018 0.56 -0.5
500,599 + MPMX19_05018 0.56 +1.1
500,599 + MPMX19_05018 0.56 +1.5
500,599 + MPMX19_05018 0.56 +2.7
500,599 + MPMX19_05018 0.56 -0.9
500,600 - MPMX19_05018 0.56 +0.1
500,600 - MPMX19_05018 0.56 -0.3
500,600 - MPMX19_05018 0.56 -0.2
500,600 - MPMX19_05018 0.56 +0.3
500,600 - MPMX19_05018 0.56 -0.6
500,600 - MPMX19_05018 0.56 -0.5
500,600 - MPMX19_05018 0.56 -0.4
500,600 - MPMX19_05018 0.56 +0.8
500,600 - MPMX19_05018 0.56 -1.2
500,600 - MPMX19_05018 0.56 +0.5
500,600 - MPMX19_05018 0.56 -0.2
500,672 - MPMX19_05018 0.61 -0.2
500,758 + MPMX19_05018 0.67 +0.4
500,758 + MPMX19_05018 0.67 -0.8
500,758 + MPMX19_05018 0.67 -0.5
500,758 + MPMX19_05018 0.67 -1.1
500,758 + MPMX19_05018 0.67 -0.5
500,758 + MPMX19_05018 0.67 +0.5
500,758 + MPMX19_05018 0.67 -1.3
500,758 + MPMX19_05018 0.67 -0.5
500,758 + MPMX19_05018 0.67 +1.1
500,758 + MPMX19_05018 0.67 +0.5
500,758 + MPMX19_05018 0.67 -0.4
500,758 + MPMX19_05018 0.67 +0.7
500,758 + MPMX19_05018 0.67 +1.1
500,758 + MPMX19_05018 0.67 +0.9
500,758 + MPMX19_05018 0.67 +0.9
500,759 - MPMX19_05018 0.67 -0.7
500,759 - MPMX19_05018 0.67 -1.1
500,759 - MPMX19_05018 0.67 +0.3
500,759 - MPMX19_05018 0.67 -0.2
500,759 - MPMX19_05018 0.67 +0.5
500,759 - MPMX19_05018 0.67 +0.9
500,759 - MPMX19_05018 0.67 -0.5
500,759 - MPMX19_05018 0.67 +1.7
500,759 - MPMX19_05018 0.67 -0.9
500,759 - MPMX19_05018 0.67 -0.7
500,759 - MPMX19_05018 0.67 -1.3
500,770 + MPMX19_05018 0.68 -1.9
500,771 - MPMX19_05018 0.68 +0.5
500,779 + MPMX19_05018 0.68 -1.1
500,779 + MPMX19_05018 0.68 +0.8
500,798 - MPMX19_05018 0.70 -1.8

Or see this region's nucleotide sequence